mRNA_M-pyrifera_M_contig9786.22530.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9786.22530.1
Unique NamemRNA_M-pyrifera_M_contig9786.22530.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9786.22530.1 vs. uniprot
Match: A0A6H5KRH1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRH1_9PHAE)

HSP 1 Score: 310 bits (794), Expect = 4.360e-100
Identity = 191/368 (51.90%), Postives = 225/368 (61.14%), Query Frame = 1 
Query:    1 GTATVVIGSALTASFLVYRRGMHGFRSAAQVPTSYFEHRKRVRVRVANI--VAVTPPISNAPGHTHHPANVCGEGAREGAALLDPTISGKREMECHRGSDVFVHAEHITIFRRLLRLPPRSLPSRGGGDDNATFLLRLCGVSAEEDGVAFAREQLIKQSAGLYCDAELLFREERPRGSPSAGGGVGIGGSSSGQQASWPVAVCHVHRRRGVLWRDWFQSSLDPKAGLGEHLLLAGLATLREEKWWAG---EGSIASPAATTTAA------------HFSDTADSG--GSDSYHP-PALQRLIADRARFASAEERAKRERTGLWAEFVEPGGEG-----AAAGEIAERGWRDRSASVVRVLKSLF-TWR 1026
            GTAT+++GSAL  SFLVYRRG+HGFRSAAQVP SYFE RKR+RVR+A I      PP  + P          G G  + A +  PT   K       GSDV +HAEHIT+ RRLLRLPPRSL    GG D ATF LRLCGVSAE +GV  AR +L+K   G YCDAELLFRE+R   SPSA  GVG G  ++ +Q S PVAVCH+HRRRGVLWRD  QS +DPKAG GE+L+  GLA LREE+WWA     G   +PA  T AA            H +  A +G  G DS  P PAL+RL+ DR    +AE  AKR   GLW +  + GGEG     AAAG    +   +  A + RVL  LF  WR
Sbjct:   60 GTATMMVGSALAISFLVYRRGVHGFRSAAQVPASYFERRKRLRVRIAKISEAPAAPPTFDGPPKD-------GRGRFDTAGVAIPTTRPK-------GSDVLLHAEHITLPRRLLRLPPRSLLPSAGGSDAATFTLRLCGVSAESEGVLLARNELVKPLVGFYCDAELLFREQRSAASPSATAGVGFGVGAT-EQVSGPVAVCHIHRRRGVLWRDMLQSRIDPKAGFGEYLISQGLARLREEQWWAAADRNGLTPAPAVVTAAARPTSAVSAQTHRHRTGAASTGEGGDDSEQPFPALKRLLEDREILVAAEGDAKRASRGLW-DLPQRGGEGGGRDSAAAGRA--KSLIEGVAGIARVLTGLFGRWR 409
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9786.22530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KRH1_9PHAE4.360e-10051.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9786contigM-pyrifera_M_contig9786:1004..3759 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_005150.1
Exons4
Model size1029
Cds size1029
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9786.22530.1prot_M-pyrifera_M_contig9786.22530.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9786 1004..3759 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816895.2622354-CDS-M-pyrifera_M_contig9786:1003..14531622816895.2622354-CDS-M-pyrifera_M_contig9786:1003..1453Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9786 1004..1453 -
1692278241.7685232-CDS-M-pyrifera_M_contig9786:1003..14531692278241.7685232-CDS-M-pyrifera_M_contig9786:1003..1453Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9786 1004..1453 -
1622816895.2730258-CDS-M-pyrifera_M_contig9786:1908..21921622816895.2730258-CDS-M-pyrifera_M_contig9786:1908..2192Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9786 1909..2192 -
1692278241.7819505-CDS-M-pyrifera_M_contig9786:1908..21921692278241.7819505-CDS-M-pyrifera_M_contig9786:1908..2192Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9786 1909..2192 -
1622816895.2850792-CDS-M-pyrifera_M_contig9786:2660..28861622816895.2850792-CDS-M-pyrifera_M_contig9786:2660..2886Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9786 2661..2886 -
1692278241.793727-CDS-M-pyrifera_M_contig9786:2660..28861692278241.793727-CDS-M-pyrifera_M_contig9786:2660..2886Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9786 2661..2886 -
1622816895.2968717-CDS-M-pyrifera_M_contig9786:3690..37591622816895.2968717-CDS-M-pyrifera_M_contig9786:3690..3759Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9786 3691..3759 -
1692278241.8094964-CDS-M-pyrifera_M_contig9786:3690..37591692278241.8094964-CDS-M-pyrifera_M_contig9786:3690..3759Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9786 3691..3759 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9786.22530.1

>prot_M-pyrifera_M_contig9786.22530.1 ID=prot_M-pyrifera_M_contig9786.22530.1|Name=mRNA_M-pyrifera_M_contig9786.22530.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=343bp
GTATVVIGSALTASFLVYRRGMHGFRSAAQVPTSYFEHRKRVRVRVANIV
AVTPPISNAPGHTHHPANVCGEGAREGAALLDPTISGKREMECHRGSDVF
VHAEHITIFRRLLRLPPRSLPSRGGGDDNATFLLRLCGVSAEEDGVAFAR
EQLIKQSAGLYCDAELLFREERPRGSPSAGGGVGIGGSSSGQQASWPVAV
CHVHRRRGVLWRDWFQSSLDPKAGLGEHLLLAGLATLREEKWWAGEGSIA
SPAATTTAAHFSDTADSGGSDSYHPPALQRLIADRARFASAEERAKRERT
GLWAEFVEPGGEGAAAGEIAERGWRDRSASVVRVLKSLFTWR*
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mRNA from alignment at M-pyrifera_M_contig9786:1004..3759-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9786.22530.1 ID=mRNA_M-pyrifera_M_contig9786.22530.1|Name=mRNA_M-pyrifera_M_contig9786.22530.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2756bp|location=Sequence derived from alignment at M-pyrifera_M_contig9786:1004..3759- (Macrocystis pyrifera P11B4 male)
GGAACCGCGACTGTGGTAATCGGATCAGCTCTGACCGCGTCCTTTCTTGT
GTACCGTCGGGGCATGCATGTGAGTCGCCTGGCAGTCTCGTCGTTCGCGG
GTGCACCATAGGCTCTAGAGTCCAGTGCCCGTCAGGCGTTAGCAACATGA
AGAATGTTACCGCTGTGGGTATTGTGCATACAGGTGCCTCTCCATTGGCC
GTTCGCAAACTTGGGGGTGTTGGGTATCATGTTGATTTTTTCGATTGATT
TGTATGGAAATACCGTAGGTTATTATGCCATTGTATCGGTTTTGTTTTGC
CCTCCGCTCCCTGCACCATAACTACTCTATATACGCCGTACTGCTGTAAG
CTGTGCCGCCCTTCGAAATACTGTAAGTTTTATTTCGCTCCGCGAAACGC
GATGGTTTTCTGTTACGGCCTTATGACGGCGGTTTTTATGCCATTGTGTT
GCCCCCCAACCTACCGTTAGCTTTGATTCCGCATCGTTAAACACAGCGGT
GCGCGCAAACGTTTGTCCTCTACTACTGTACGCATTTCCCTTCGGTTTAT
AGGAGAAGGGCGGTTTTGTCCTCGTCCTTTTGTTCACGAGAACAGTACTA
TTGTTCCCTTGTTTTTTTCCCGGAAAGCAGGAAAGTGAAGCTTGACTGGA
CGCTTTTGACGTACTTTGGCAAGGGTAACTTTGCTTAGCTGCGGTTCTTG
GCCATGTACAGACCTGTTTTCTGGAGCCTCATATCTGGGATATGTTTTTA
TGTTTCAGTGCAGGTTCATGTTTGCCCTAGAGTTACGAGATTAGAGAAGA
GAACACCATGATGGCATCGAAGGCTCTACACTCGGGGGTACTAACGACAA
CCATTACTCGGTACCGCTTCCAGGGTTTCCGCTCTGCTGCTCAGGTGCCC
ACGTCATATTTTGAGCACCGAAAGCGGGTGAGGGTCCGGGTTGCCAACAT
AGTCGCGGTGACCCCTCCAATCTCCAATGCTCCAGGCCACACCCACCACC
CTGCCAATGTTTGCGGAGAGGGAGCTCGTGAGGGGGCAGCGCTCCTTGAT
CCTACTATCAGCGGCAAGAGGGAGATGGAGTGCCACCGGGGCTCAGACGG
TGACATCGGGGTGGCTGATTACTTCTGCATGTGTCTTAGGCGGCAGGTGC
TGCAAATCACAGCTTACAAGAGAGCGGCATACACGATTTTGCTTGCATTA
CATCAATATTCCCTGCGACATCCTGTTGATGTGTGCTAGGCGCGGACTGT
CTGAGGTGCCTCCCCTCTAAGTGCCCCCTCGCTTTAGGCTGTGGTTTACC
TTTGCTGCGTTGGTTGTCGCAGTCGCCTCGTCGCGTTGTAAGTGTGGCAA
GAGTATCTTGGGTCCAACTGGCCATATGGACAAGCTTTCAATCATTCAGG
GTACCGTCCCGTGTCCAGGTTCATCGCCGCTCTTCAGCTCCTTCGTTCAG
ACTCTACACTACGGTCGTCGCGCGTTGTTTCGGCGCGGTATATATGTTGA
TTCATCACTTCCCACCAACCGTACGCGCTTCACGGCTTGCACCCACCCTC
TGTCTCCGATGTCGCAGTTTTCGTGCACGCCGAGCATATCACCATATTCC
GGCGGCTCCTCCGTCTACCGCCGCGATCCCTTCCTTCGAGGGGTGGCGGC
GATGATAATGCCACCTTCCTCTTGAGGCTGTGCGGGGTTTCCGCAGAAGA
AGACGGCGTAGCGTTCGCACGAGAACAGCTGATCAAGCAGTCGGCCGGTC
TTTACTGCGACGCTGAGCTGCTATTCAGGGAGGAAAGGCCTAGGGGTTCC
CCGAGCGCAGGTGGAGGCGTCGGCATCGGCGGCTCTTCTAGTGGGCAGCA
GGTGCCTGAAGGTTTCCCTAACACTGCTGTTGGAAAGGGGTTGCCTCATG
AAGTACGAGTACCCAATCGGCGCTGACTGATGAGTCCAGCAGAGGGAATT
GCCTCGAAATGTTCCTGCAGGATAGGTGCTGAATTTCCCCACAGTACTGT
TTTGTACGACGGACTATCTTGCTAGACTTCTCCGTCAGCCGCGGGTTCCA
GAATATAAGTTTGTTTTATTTTGTGTGGTTGGAGGGAGATCAGTACCTGC
TTGACTACGTAGTCAGCCGCTGACGAGTGGTCTTCCAGGCATATATCTGT
GCGCCCTCGTAGCTGATGGCAACACCGAGCTAGTGTGTGTTTGAGCGTCA
CCATAAGACCCCTCCTCTCTCCGCCATCCCGCTGCGACGGCCGTCTCATG
CGCGTCCCCTCGTTCTGCCATGTTTATGTGCTGTTATTTCTGGGCGTTTG
GGGAAGGCTTCTTGGCCGGTGGCCGTCTGCCACGTCCACCGCCGCAGGGG
CGTGTTGTGGCGGGACTGGTTCCAGTCCTCGCTGGACCCGAAGGCCGGCC
TCGGGGAGCACCTCCTCCTCGCGGGCCTCGCGACGCTGCGGGAAGAAAAG
TGGTGGGCCGGGGAGGGCAGCATCGCCTCCCCGGCAGCGACAACCACCGC
GGCGCATTTTTCTGACACCGCCGATTCTGGAGGAAGTGACTCCTACCACC
CTCCCGCGCTCCAGCGCCTGATCGCGGATCGTGCGAGGTTTGCATCTGCC
GAAGAAAGGGCGAAGAGGGAAAGGACAGGACTATGGGCGGAGTTCGTGGA
GCCGGGTGGGGAAGGGGCCGCCGCCGGGGAAATTGCGGAGAGGGGTTGGA
GGGACAGGTCGGCGTCGGTTGTTCGCGTCCTGAAGAGTTTGTTCACATGG
CGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9786:1004..3759-

>mRNA_M-pyrifera_M_contig9786.22530.1 ID=mRNA_M-pyrifera_M_contig9786.22530.1|Name=mRNA_M-pyrifera_M_contig9786.22530.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2058bp|location=Sequence derived from alignment at M-pyrifera_M_contig9786:1004..3759- (Macrocystis pyrifera P11B4 male)
GGAACCGCGACTGTGGTAATCGGATCAGCTCTGACCGCGTCCTTTCTTGT
GTACCGTCGGGGCATGCATGGAACCGCGACTGTGGTAATCGGATCAGCTC
TGACCGCGTCCTTTCTTGTGTACCGTCGGGGCATGCATGGTTTCCGCTCT
GCTGCTCAGGTGCCCACGTCATATTTTGAGCACCGAAAGCGGGTGAGGGT
CCGGGTTGCCAACATAGTCGCGGTGACCCCTCCAATCTCCAATGCTCCAG
GCCACACCCACCACCCTGCCAATGTTTGCGGAGAGGGAGCTCGTGAGGGG
GCAGCGCTCCTTGATCCTACTATCAGCGGCAAGAGGGAGATGGAGTGCCA
CCGGGGCTCAGACGGGTTTCCGCTCTGCTGCTCAGGTGCCCACGTCATAT
TTTGAGCACCGAAAGCGGGTGAGGGTCCGGGTTGCCAACATAGTCGCGGT
GACCCCTCCAATCTCCAATGCTCCAGGCCACACCCACCACCCTGCCAATG
TTTGCGGAGAGGGAGCTCGTGAGGGGGCAGCGCTCCTTGATCCTACTATC
AGCGGCAAGAGGGAGATGGAGTGCCACCGGGGCTCAGACGTTTTCGTGCA
CGCCGAGCATATCACCATATTCCGGCGGCTCCTCCGTCTACCGCCGCGAT
CCCTTCCTTCGAGGGGTGGCGGCGATGATAATGCCACCTTCCTCTTGAGG
CTGTGCGGGGTTTCCGCAGAAGAAGACGGCGTAGCGTTCGCACGAGAACA
GCTGATCAAGCAGTCGGCCGGTCTTTACTGCGACGCTGAGCTGCTATTCA
GGGAGGAAAGGCCTAGGGGTTCCCCGAGCGCAGGTGGAGGCGTCGGCATC
GGCGGCTCTTCTAGTGGGCAGCAGTTTTCGTGCACGCCGAGCATATCACC
ATATTCCGGCGGCTCCTCCGTCTACCGCCGCGATCCCTTCCTTCGAGGGG
TGGCGGCGATGATAATGCCACCTTCCTCTTGAGGCTGTGCGGGGTTTCCG
CAGAAGAAGACGGCGTAGCGTTCGCACGAGAACAGCTGATCAAGCAGTCG
GCCGGTCTTTACTGCGACGCTGAGCTGCTATTCAGGGAGGAAAGGCCTAG
GGGTTCCCCGAGCGCAGGTGGAGGCGTCGGCATCGGCGGCTCTTCTAGTG
GGCAGCAGGCTTCTTGGCCGGTGGCCGTCTGCCACGTCCACCGCCGCAGG
GGCGTGTTGTGGCGGGACTGGTTCCAGTCCTCGCTGGACCCGAAGGCCGG
CCTCGGGGAGCACCTCCTCCTCGCGGGCCTCGCGACGCTGCGGGAAGAAA
AGTGGTGGGCCGGGGAGGGCAGCATCGCCTCCCCGGCAGCGACAACCACC
GCGGCGCATTTTTCTGACACCGCCGATTCTGGAGGAAGTGACTCCTACCA
CCCTCCCGCGCTCCAGCGCCTGATCGCGGATCGTGCGAGGTTTGCATCTG
CCGAAGAAAGGGCGAAGAGGGAAAGGACAGGACTATGGGCGGAGTTCGTG
GAGCCGGGTGGGGAAGGGGCCGCCGCCGGGGAAATTGCGGAGAGGGGTTG
GAGGGACAGGTCGGCGTCGGTTGTTCGCGTCCTGAAGAGTTTGTTCACAT
GGCGGTGAGCTTCTTGGCCGGTGGCCGTCTGCCACGTCCACCGCCGCAGG
GGCGTGTTGTGGCGGGACTGGTTCCAGTCCTCGCTGGACCCGAAGGCCGG
CCTCGGGGAGCACCTCCTCCTCGCGGGCCTCGCGACGCTGCGGGAAGAAA
AGTGGTGGGCCGGGGAGGGCAGCATCGCCTCCCCGGCAGCGACAACCACC
GCGGCGCATTTTTCTGACACCGCCGATTCTGGAGGAAGTGACTCCTACCA
CCCTCCCGCGCTCCAGCGCCTGATCGCGGATCGTGCGAGGTTTGCATCTG
CCGAAGAAAGGGCGAAGAGGGAAAGGACAGGACTATGGGCGGAGTTCGTG
GAGCCGGGTGGGGAAGGGGCCGCCGCCGGGGAAATTGCGGAGAGGGGTTG
GAGGGACAGGTCGGCGTCGGTTGTTCGCGTCCTGAAGAGTTTGTTCACAT
GGCGGTGA
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