mRNA_M-pyrifera_M_contig97817.22524.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97817.22524.1
Unique NamemRNA_M-pyrifera_M_contig97817.22524.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig97817.22524.1 vs. uniprot
Match: UPI001457FCFD (uncharacterized protein LOC117323265 isoform X2 n=2 Tax=Pecten maximus TaxID=6579 RepID=UPI001457FCFD)

HSP 1 Score: 93.2 bits (230), Expect = 5.270e-20
Identity = 54/134 (40.30%), Postives = 76/134 (56.72%), Query Frame = 1
Query:   22 VPEACLGAWRPVGLGKDGRLIKYLPGGHFSPHFDMCNGPDDTGRASMLTLMVYLNAGFGGGATEMLSNAKTDVEEDRGKVVPTAASKVGAFKPEKAGVVVVFRQGTLLHCGAPVTEGTKYLLRFDVWFEKVKEE 423
            +P    G W PVGL K  RL +Y PGGHF+PHFD     D   R SM TLMVYLN  F GG+T  +  ++T   ++ GK      + +   +PE AG+ ++F    L H G  + +  KY+LR D+ ++KV E+
Sbjct:  136 IPCVVEGKWVPVGLNKLFRLCRYHPGGHFAPHFDGFFEEDSKHR-SMKTLMVYLNGDFTGGSTNFVDESQTLHMDETGKYCAEEENILCKIQPE-AGMAIIFNHHRL-HEGQKLGDNKKYILRTDIMYKKVSED 266          
BLAST of mRNA_M-pyrifera_M_contig97817.22524.1 vs. uniprot
Match: UPI001EE52A73 (uncharacterized protein LOC124275771 n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EE52A73)

HSP 1 Score: 89.4 bits (220), Expect = 1.350e-18
Identity = 48/122 (39.34%), Postives = 70/122 (57.38%), Query Frame = 1
Query:   40 GAWRPVGLGKDGRLIKYLPGGHFSPHFDMCNGPDDTGRASMLTLMVYLNAGFGGGATEMLSNAKTDVEEDRGKVVPTAASKVGAFKPEKAGVVVVFRQGTLLHCGAPVTEGTKYLLRFDVWF 405
            G W+P+GL    RL +YLPGGHFSPHFD  +    T + S+ TLM+YLN  F GG+T  +   +   +++ GK      + +   +PE  G+ +VF    L H G  + +G KY+LR D+ F
Sbjct:  136 GTWQPLGLNPVFRLCRYLPGGHFSPHFDG-HFSSSTDQRSLQTLMLYLNGDFSGGSTNFVDEKQVLYKDENGKFCAEEKNVLYRIQPEP-GMAIVFNHHRL-HEGEKLGDGRKYILRTDIMF 254          
BLAST of mRNA_M-pyrifera_M_contig97817.22524.1 vs. uniprot
Match: A0A2T7NXY8_POMCA (Fe2OG dioxygenase domain-containing protein n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NXY8_POMCA)

HSP 1 Score: 85.1 bits (209), Expect = 5.760e-17
Identity = 45/127 (35.43%), Postives = 70/127 (55.12%), Query Frame = 1
Query:   40 GAWRPVGLGKDGRLIKYLPGGHFSPHFDMCNGPDDTGRASMLTLMVYLNAGFGGGATEMLSNAKTDVEEDRGKVVPTAASKVGAFKPEKAGVVVVFRQGTLLHCGAPVTEGTKYLLRFDVWFEKVKE 420
            G W+P+GL    RL +YLPGGHF+PHFD  +        S+ T M+YLN  F GG+T  +   +   + + GK      + + + +PE AG+ ++F    L H G  + +G KY+LR D+ F  + +
Sbjct:  146 GTWQPLGLNSMFRLCRYLPGGHFAPHFDG-HFVRSAQERSLQTFMLYLNGNFEGGSTNFIHEDQHLFKNEDGKYCAEEKNIICSIQPE-AGLAIIFNHHRL-HEGQQLKDGVKYILRTDIMFHNISQ 269          
BLAST of mRNA_M-pyrifera_M_contig97817.22524.1 vs. uniprot
Match: L8H6B2_ACACA (Prolyl 4hydroxylase, alpha subunit n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H6B2_ACACA)

HSP 1 Score: 75.5 bits (184), Expect = 5.760e-14
Identity = 45/122 (36.89%), Postives = 60/122 (49.18%), Query Frame = 1
Query:   46 WRPVGLGKDGRLIKYLPGGHFSPHFDMCNGPDDTGRASMLTLMVYLNAGFGGGATEMLSNAKTDVEEDRGKVVPTAASKVGAFKPEKAGVVVVFRQGTLLHCGAPVTEGTKYLLRFDVWFEK 411
            WRP GL +  R  +Y PG HFS HFD C    +  + S LT+M+YLN GF GGAT  L   K  V+                     AG+ +VF Q  + H G  +  G KY++R D  F++
Sbjct:  112 WRPYGLNERWRFCRYTPGQHFSSHFDGCFRASEDDK-SHLTVMLYLNGGFEGGATVFLEGTKDRVQP-------------------VAGMALVF-QHNIYHEGERLESGVKYIMRSDAMFQR 212          
BLAST of mRNA_M-pyrifera_M_contig97817.22524.1 vs. uniprot
Match: A0A1E7FDC5_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FDC5_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 6.000e-14
Identity = 47/128 (36.72%), Postives = 69/128 (53.91%), Query Frame = 1
Query:   13 ERVVPEACLGAWRPVGLGKDGRLIKYLPGGHFSPHFDMCNGPDDTGR-ASMLTLMVYLNAGFGGGATEMLSNAKTDVEEDRGKVVPTAASKVGAFKPEKAGVVVVFRQGTLLHCGAPVTEGTKYLLRF 393
            E  VP   LG  +  G+G+   + KY PG +F+PHFD      +  + AS  T++VYL+  F GGAT  LS   ++V++              A +P K G   + RQG++LH G  V EGTKY+++F
Sbjct:  157 EGQVPLEILGGRKFCGVGESFLVSKYAPGQYFAPHFDGRGAKRNAEKQASEFTVVVYLSDDFVGGATHYLSGQGSEVKQSV------------AVRPTK-GCAAIHRQGSVLHAGGAVKEGTKYIMQF 271          
BLAST of mRNA_M-pyrifera_M_contig97817.22524.1 vs. uniprot
Match: UPI00106AAADA (uncharacterized protein LOC114527302 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106AAADA)

HSP 1 Score: 73.6 bits (179), Expect = 1.130e-13
Identity = 50/133 (37.59%), Postives = 70/133 (52.63%), Query Frame = 1
Query:   13 ERVVPEACLGAWRPVGLGKDGRLIKYLPGGHFSPHFDMCNGPDDTGRASMLTLMVYLNAGFGGGATEMLSNAKTDVEEDRGKVVPTAASKVGAFKPEKAGVVVVFRQGTLLHCGAPVTEGTKYLLRFDVWFEK 411
            + ++PE   G  + +GL +  R ++Y  G  F PHFD     D+ G  S LTL +YLN  F GGAT  L N + ++ E+    VP            K G V+VF Q  +LHCG+ + +G KY +R DV F K
Sbjct:   47 KHLIPEKWEGR-KALGLNERLRFLRYDSGQEFKPHFDGSYARDN-GEKSYLTLQLYLNEDFTGGATTFLEN-RFELSENDVPCVP------------KTGRVLVF-QHDILHCGSILVKGRKYCVRTDVMFSK 163          
BLAST of mRNA_M-pyrifera_M_contig97817.22524.1 vs. uniprot
Match: UPI001068F272 (uncharacterized protein LOC114517123 isoform X2 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI001068F272)

HSP 1 Score: 73.9 bits (180), Expect = 1.390e-13
Identity = 52/136 (38.24%), Postives = 71/136 (52.21%), Query Frame = 1
Query:   13 ERVVPEACLGAWRPVGLGKDGRLIKYLPGGHFSPHFDMCNGPDDTGRASMLTLMVYLNAGFGGGATEMLSN---AKTDVEEDRGKVVPTAASKVGAFKPEKAGVVVVFRQGTLLHCGAPVTEGTKYLLRFDVWFEK 411
            + ++PE   G  + +GL +  R ++Y PG  F PHFD  +   D G AS LT+ +YLN GF GGAT  L N    + DV+      VP            K G V+VF Q  +LH G+ + +G KY LR DV F +
Sbjct:   75 KHLIPEKWRGR-KALGLNERLRFLRYDPGQEFKPHFDG-SYVRDNGEASYLTIQLYLNEGFTGGATTFLENFEFGRNDVD-----CVP------------KIGRVLVF-QHDILHSGSKLMKGRKYCLRTDVMFSR 190          
BLAST of mRNA_M-pyrifera_M_contig97817.22524.1 vs. uniprot
Match: UPI00106B0DBF (uncharacterized protein LOC114517123 isoform X1 n=2 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106B0DBF)

HSP 1 Score: 73.9 bits (180), Expect = 2.320e-13
Identity = 52/136 (38.24%), Postives = 71/136 (52.21%), Query Frame = 1
Query:   13 ERVVPEACLGAWRPVGLGKDGRLIKYLPGGHFSPHFDMCNGPDDTGRASMLTLMVYLNAGFGGGATEMLSN---AKTDVEEDRGKVVPTAASKVGAFKPEKAGVVVVFRQGTLLHCGAPVTEGTKYLLRFDVWFEK 411
            + ++PE   G  + +GL +  R ++Y PG  F PHFD  +   D G AS LT+ +YLN GF GGAT  L N    + DV+      VP            K G V+VF Q  +LH G+ + +G KY LR DV F +
Sbjct:  104 KHLIPEKWRGR-KALGLNERLRFLRYDPGQEFKPHFDG-SYVRDNGEASYLTIQLYLNEGFTGGATTFLENFEFGRNDVD-----CVP------------KIGRVLVF-QHDILHSGSKLMKGRKYCLRTDVMFSR 219          
BLAST of mRNA_M-pyrifera_M_contig97817.22524.1 vs. uniprot
Match: W6KVL0_9TRYP (Fe2OG dioxygenase domain-containing protein n=1 Tax=Phytomonas sp. isolate EM1 TaxID=134006 RepID=W6KVL0_9TRYP)

HSP 1 Score: 73.2 bits (178), Expect = 1.370e-12
Identity = 45/127 (35.43%), Postives = 66/127 (51.97%), Query Frame = 1
Query:   40 GAWRPVGLGKDGRLIKYLPGGHFSPHFDMCNGPDDTGRASMLTLMVYLNAGFGGGATEMLSNAKTDV---EEDRGKVVPTAASKVGAFKPEKAGVVVVFRQGTLLHCGAPVTEGTKYLLRFDVWFEK 411
            G W P  L  +  L +Y PGGHF PH D     D   R S  TL++YLN    GG T + S  +  V   + +  K+  +A+++VG+ +P+K      +    LLH GAPV  G KY+ R D+ + +
Sbjct:  140 GEWVPYALSSNLLLGRYKPGGHFMPHIDGSTVVDLNTR-SFYTLLLYLNDCPEGGETHLFSGEQHKVIFMDSEANKLRGSASNRVGSVEPKKGRAAFFYYD--LLHEGAPVVSGLKYICRADLLYRR 263          
BLAST of mRNA_M-pyrifera_M_contig97817.22524.1 vs. uniprot
Match: A0A1E1IUX4_LEIGU (Fe2OG dioxygenase domain-containing protein n=4 Tax=Viannia TaxID=37616 RepID=A0A1E1IUX4_LEIGU)

HSP 1 Score: 73.2 bits (178), Expect = 1.380e-12
Identity = 46/136 (33.82%), Postives = 67/136 (49.26%), Query Frame = 1
Query:   13 ERVVPEACLGAWRPVGLGKDGRLIKYLPGGHFSPHFDMCNGPDDTGRASMLTLMVYLNAGFGGGATEMLSNAKTDV---EEDRGKVVPTAASKVGAFKPEKAGVVVVFRQGTLLHCGAPVTEGTKYLLRFDVWFEK 411
            E +      G W P  L ++    +Y PGGHF PH D     D   R S+ TL++YLN    GG T + S  +  V   +E+  +     A +VGA  P+K    + +    LLH GAPV +G KY+ R D+ + +
Sbjct:  132 EELFERDLAGTWVPHALSENLLFGRYRPGGHFMPHADGSTIVDLNTR-SLYTLLIYLNDCSRGGETFVFSGEQCSVMYLDEEENRYRGNTARRVGAVYPKKGSAALFYCN--LLHEGAPVVQGYKYICRADLLYRR 264          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97817.22524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001457FCFD5.270e-2040.30uncharacterized protein LOC117323265 isoform X2 n=... [more]
UPI001EE52A731.350e-1839.34uncharacterized protein LOC124275771 n=2 Tax=Halio... [more]
A0A2T7NXY8_POMCA5.760e-1735.43Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
L8H6B2_ACACA5.760e-1436.89Prolyl 4hydroxylase, alpha subunit n=1 Tax=Acantha... [more]
A0A1E7FDC5_9STRA6.000e-1436.72Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
UPI00106AAADA1.130e-1337.59uncharacterized protein LOC114527302 n=1 Tax=Dendr... [more]
UPI001068F2721.390e-1338.24uncharacterized protein LOC114517123 isoform X2 n=... [more]
UPI00106B0DBF2.320e-1338.24uncharacterized protein LOC114517123 isoform X1 n=... [more]
W6KVL0_9TRYP1.370e-1235.43Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A1E1IUX4_LEIGU1.380e-1233.82Fe2OG dioxygenase domain-containing protein n=4 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97817contigM-pyrifera_M_contig97817:257..685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue1.3e-11
Seed eggNOG ortholog44689.DDB0186534
Hectar predicted targeting categoryother localisation
EggNOG free text desc.2OG-Fe(II) oxygenase superfamily
EggNOG OGs2CUEG@1,2S4DV@2759,3XE2H@554915
COG Functional cat.S
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons1
Model size429
Cds size429
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816894.9510982-CDS-M-pyrifera_M_contig97817:256..6851622816894.9510982-CDS-M-pyrifera_M_contig97817:256..685Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97817 257..685 -
1692278241.5520437-CDS-M-pyrifera_M_contig97817:256..6851692278241.5520437-CDS-M-pyrifera_M_contig97817:256..685Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97817 257..685 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97817.22524.1prot_M-pyrifera_M_contig97817.22524.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97817 257..685 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97817.22524.1

>prot_M-pyrifera_M_contig97817.22524.1 ID=prot_M-pyrifera_M_contig97817.22524.1|Name=mRNA_M-pyrifera_M_contig97817.22524.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
EDVEERVVPEACLGAWRPVGLGKDGRLIKYLPGGHFSPHFDMCNGPDDTG
RASMLTLMVYLNAGFGGGATEMLSNAKTDVEEDRGKVVPTAASKVGAFKP
EKAGVVVVFRQGTLLHCGAPVTEGTKYLLRFDVWFEKVKEEE*
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mRNA from alignment at M-pyrifera_M_contig97817:257..685-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97817.22524.1 ID=mRNA_M-pyrifera_M_contig97817.22524.1|Name=mRNA_M-pyrifera_M_contig97817.22524.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig97817:257..685- (Macrocystis pyrifera P11B4 male)
GAGGATGTGGAGGAGAGGGTGGTGCCGGAGGCTTGCTTGGGCGCGTGGCG CCCTGTGGGGTTGGGAAAAGACGGGAGACTGATCAAGTACTTGCCTGGAG GACACTTTTCGCCGCACTTTGACATGTGCAACGGACCAGATGACACGGGC AGAGCGTCAATGCTCACCCTCATGGTGTACTTGAACGCGGGATTTGGCGG TGGGGCCACGGAAATGCTCAGCAACGCAAAAACCGACGTGGAGGAAGACC GAGGAAAAGTCGTGCCAACGGCAGCCAGCAAAGTCGGAGCCTTCAAACCC GAGAAAGCGGGAGTGGTGGTCGTTTTCAGACAAGGCACGCTCCTGCACTG CGGGGCGCCCGTAACAGAAGGCACAAAGTACTTGCTCCGCTTTGACGTGT GGTTCGAAAAAGTAAAAGAAGAAGAATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig97817:257..685-

>mRNA_M-pyrifera_M_contig97817.22524.1 ID=mRNA_M-pyrifera_M_contig97817.22524.1|Name=mRNA_M-pyrifera_M_contig97817.22524.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig97817:257..685- (Macrocystis pyrifera P11B4 male)
GAGGATGTGGAGGAGAGGGTGGTGCCGGAGGCTTGCTTGGGCGCGTGGCG
CCCTGTGGGGTTGGGAAAAGACGGGAGACTGATCAAGTACTTGCCTGGAG
GACACTTTTCGCCGCACTTTGACATGTGCAACGGACCAGATGACACGGGC
AGAGCGTCAATGCTCACCCTCATGGTGTACTTGAACGCGGGATTTGGCGG
TGGGGCCACGGAAATGCTCAGCAACGCAAAAACCGACGTGGAGGAAGACC
GAGGAAAAGTCGTGCCAACGGCAGCCAGCAAAGTCGGAGCCTTCAAACCC
GAGAAAGCGGGAGTGGTGGTCGTTTTCAGACAAGGCACGCTCCTGCACTG
CGGGGCGCCCGTAACAGAAGGCACAAAGTACTTGCTCCGCTTTGACGTGT
GGTTCGAAAAAGTAAAAGAAGAAGAATAAGAGGATGTGGAGGAGAGGGTG
GTGCCGGAGGCTTGCTTGGGCGCGTGGCGCCCTGTGGGGTTGGGAAAAGA
CGGGAGACTGATCAAGTACTTGCCTGGAGGACACTTTTCGCCGCACTTTG
ACATGTGCAACGGACCAGATGACACGGGCAGAGCGTCAATGCTCACCCTC
ATGGTGTACTTGAACGCGGGATTTGGCGGTGGGGCCACGGAAATGCTCAG
CAACGCAAAAACCGACGTGGAGGAAGACCGAGGAAAAGTCGTGCCAACGG
CAGCCAGCAAAGTCGGAGCCTTCAAACCCGAGAAAGCGGGAGTGGTGGTC
GTTTTCAGACAAGGCACGCTCCTGCACTGCGGGGCGCCCGTAACAGAAGG
CACAAAGTACTTGCTCCGCTTTGACGTGTGGTTCGAAAAAGTAAAAGAAG
AAGAATAA
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