mRNA_M-pyrifera_M_contig97454.22448.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97454.22448.1
Unique NamemRNA_M-pyrifera_M_contig97454.22448.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig97454.22448.1 vs. uniprot
Match: UPI001B0D240B (Fibronectin type III domain-containing protein n=2 Tax=Paenibacillaceae TaxID=186822 RepID=UPI001B0D240B)

HSP 1 Score: 65.1 bits (157), Expect = 7.990e-10
Identity = 43/119 (36.13%), Postives = 60/119 (50.42%), Query Frame = 1 
Query:    1 LLDEQEIAGDPRANKSGTPVTPYNPEYNPDWYAYTPLPFAIIDLGATYHLTDVYFAHGWGKLNFTLSLG-PSPFNQPFSWPVHNVSAGNGMPGNTSGRYLLLTLPATTDSSLVEIVVYG 354
            L+DEQ  AGDP+    G+P T Y    +P +Y  +     +IDLGA YHLTD+Y    +   N  +S G P  +   F+ P+           + + RYL      T ++SL EIVVYG
Sbjct: 1078 LVDEQAAAGDPKNGTGGSPSTDYFVGDHPTYYPGS----VVIDLGADYHLTDIYMYDTYASGNVKISYGTPGNWQTLFTDPLSGYFTWTARTVDATTRYL--RYQETINTSLPEIVVYG 1190
[Close]
BLAST of mRNA_M-pyrifera_M_contig97454.22448.1 vs. uniprot
Match: UPI0019EBDF8E (Uncharacterized protein n=2 Tax=Paenibacillus plantarum TaxID=2654975 RepID=UPI0019EBDF8E)

HSP 1 Score: 58.5 bits (140), Expect = 1.530e-7
Identity = 45/126 (35.71%), Postives = 64/126 (50.79%), Query Frame = 1 
Query:    1 LLDEQEIAGDPRANKSGTPVTPY----NPEYNPDWYAYTPLPF-AIIDLGATYHLTDVYF--AHGWGKLNFTLSLG-PSPFNQPFSWPVHNVSAGNGMPGNTSGRYLLLTLPATTDSSLVEIVVYG 354
            L+DEQ +AGDPRA  SG P   +    N    P+   Y  LP  A +D G T+H+TD+YF   +      F +  G P  ++  F+  + + +A  G   N   RYL     A T +++ EIVVYG
Sbjct:  471 LIDEQVLAGDPRAGTSGAPQNGWYFFLNQYAAPNTGQYWWLPASAYLDFGRTFHITDIYFYDVNASSTNGFVVDSGTPFHWSNLFTDNLGSYNAWRGKQVNVDTRYLRFGF-ANTGANINEIVVYG 595
[Close]
BLAST of mRNA_M-pyrifera_M_contig97454.22448.1 vs. uniprot
Match: G8R1B5_OWEHD (Por_Secre_tail domain-containing protein n=1 Tax=Owenweeksia hongkongensis (strain DSM 17368 / CIP 108786 / JCM 12287 / NRRL B-23963 / UST20020801) TaxID=926562 RepID=G8R1B5_OWEHD)

HSP 1 Score: 55.1 bits (131), Expect = 2.540e-6
Identity = 39/124 (31.45%), Postives = 64/124 (51.61%), Query Frame = 1 
Query:    1 LLDEQEIAGDPRANKSGTPVTPYNPEYNPDWYAYTPLPFAIIDLGATYHLTDVYFAHGWGKLNFTLSLGPSPFNQPFSWPVHNV------SAGNGMPGNTSGRYLLLTLPATTDSSLVEIVVYG 354
            L+DEQ++AGDPR+     P T ++  YN     Y P+   IIDL A + LT++Y    +   +  + +G      P SW + +V      +    +  NT+ RYL+L  P+   + + E+V+YG
Sbjct:   43 LIDEQQLAGDPRSGSKSIPSTAFDGGYNS---IYFPIRI-IIDLKAVHQLTELYVFDSYNVDSLKVFVG-----DPSSWQLDSVLWLNEWNRWKSVSLNTNTRYLMLEFPSIK-TIINEVVLYG 156
[Close]
BLAST of mRNA_M-pyrifera_M_contig97454.22448.1 vs. uniprot
Match: UPI001B13FF62 (Fibronectin type III domain-containing protein n=2 Tax=Paenibacillaceae TaxID=186822 RepID=UPI001B13FF62)

HSP 1 Score: 52.8 bits (125), Expect = 1.610e-5
Identity = 45/122 (36.89%), Postives = 64/122 (52.46%), Query Frame = 1 
Query:    1 LLDEQEIAGDPRANKSGTPVTPYNP-EYNPDWYAYTPLPFAIIDLGATYHLTDVYFAHG--WGKLNFTLSLG-PSPFNQPFSWPVHNVSAGNGMPGNTSGRYLLLTLPATTDSSLVEIVVYG 354
            L+DEQ    DPR    GTP TP +  +Y    + Y P+  A+IDLGA Y LTD+Y+  G   G   FT S G P  +   FS  ++  +   G P N + RY+ +   + +   + EIV+YG
Sbjct:  424 LVDEQ---SDPRG---GTPTTPTSIWDYGSGTF-YLPIS-AVIDLGAEYALTDIYYFDGVGGGSSGFTFSSGSPLGWTPQFSDALNQTNKWIGHPFNVTTRYVQI-YTSVSGQKVGEIVLYG 536
[Close]
BLAST of mRNA_M-pyrifera_M_contig97454.22448.1 vs. uniprot
Match: A0A3M1UGK8_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M1UGK8_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 2.220e-5
Identity = 38/119 (31.93%), Postives = 59/119 (49.58%), Query Frame = 1 
Query:    1 LLDEQEIAGDPRANKSGTPVTPYNPEYNPDWYAYTPLPFAIIDLGATYHLTDVYFAHGWGKLNFTLSLG-PSPFNQPFSWPVHNVSAGNGMPGNTSGRYLLLTLPATTDSSLVEIVVYG 354
            L+DEQ++AGDP+A + G P T +   + P  +  +    A I+LG +YHL +VY      K   T+S G P  + +  S+             N    YL +TL     +++ EIV+YG
Sbjct:   59 LVDEQQLAGDPKAGQGGNPTTQWFTGWGPQNHPAS----AYINLGQSYHLYEVYVRDVNDKGLLTISYGSPGNWQELTSYNCSKYLKWVKFNANVQTAYLRITLHEQ-GANISEIVLYG 172
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97454.22448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI001B0D240B7.990e-1036.13Fibronectin type III domain-containing protein n=2... [more]
UPI0019EBDF8E1.530e-735.71Uncharacterized protein n=2 Tax=Paenibacillus plan... [more]
G8R1B5_OWEHD2.540e-631.45Por_Secre_tail domain-containing protein n=1 Tax=O... [more]
UPI001B13FF621.610e-536.89Fibronectin type III domain-containing protein n=2... [more]
A0A3M1UGK8_9BACT2.220e-531.93Uncharacterized protein n=1 Tax=Bacteroidetes bact... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97454contigM-pyrifera_M_contig97454:220..621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816891.4148967-CDS-M-pyrifera_M_contig97454:219..4651622816891.4148967-CDS-M-pyrifera_M_contig97454:219..465Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97454 220..465 +
1692278239.534014-CDS-M-pyrifera_M_contig97454:219..4651692278239.534014-CDS-M-pyrifera_M_contig97454:219..465Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97454 220..465 +
1622816891.4272301-CDS-M-pyrifera_M_contig97454:510..6211622816891.4272301-CDS-M-pyrifera_M_contig97454:510..621Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97454 511..621 +
1692278239.5430198-CDS-M-pyrifera_M_contig97454:510..6211692278239.5430198-CDS-M-pyrifera_M_contig97454:510..621Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97454 511..621 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97454.22448.1prot_M-pyrifera_M_contig97454.22448.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97454 220..621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97454.22448.1

>prot_M-pyrifera_M_contig97454.22448.1 ID=prot_M-pyrifera_M_contig97454.22448.1|Name=mRNA_M-pyrifera_M_contig97454.22448.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
LLDEQEIAGDPRANKSGTPVTPYNPEYNPDWYAYTPLPFAIIDLGATYHL
TDVYFAHGWGKLNFTLSLGPSPFNQPFSWPVHNVSAGNGMPGNTSGRYLL
LTLPATTDSSLVEIVVYGE
back to top

mRNA from alignment at M-pyrifera_M_contig97454:220..621+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97454.22448.1 ID=mRNA_M-pyrifera_M_contig97454.22448.1|Name=mRNA_M-pyrifera_M_contig97454.22448.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig97454:220..621+ (Macrocystis pyrifera P11B4 male)
CTCTTGGATGAGCAAGAAATTGCTGGAGATCCTCGGGCTAACAAGAGTGG
CACTCCAGTGACTCCATATAACCCCGAATACAACCCAGACTGGTATGCCT
ACACTCCACTCCCATTCGCTATTATAGATTTGGGGGCAACATACCATTTG
ACGGACGTGTACTTTGCGCACGGATGGGGCAAACTCAACTTCACCCTCTC
CCTCGGGCCCTCTCCATTCAACCAGCCATTTTCATGGCCGGTGCATGTCG
GACCGGGCGGCTTACCACCATGCGGCCCTTCTTGCTGGCAGAATGTGAGC
GCAGGCAACGGAATGCCTGGAAACACATCTGGACGTTACCTCCTCCTCAC
CCTCCCAGCTACCACCGACTCCTCGCTGGTGGAGATTGTTGTGTATGGGG
AA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig97454:220..621+

>mRNA_M-pyrifera_M_contig97454.22448.1 ID=mRNA_M-pyrifera_M_contig97454.22448.1|Name=mRNA_M-pyrifera_M_contig97454.22448.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig97454:220..621+ (Macrocystis pyrifera P11B4 male)
CTCTTGGATGAGCAAGAAATTGCTGGAGATCCTCGGGCTAACAAGAGTGG
CACTCCAGTGACTCCATATAACCCCGAATACAACCCAGACTGGTATGCCT
ACACTCCACTCCCATTCGCTATTATAGATTTGGGGGCAACATACCATTTG
ACGGACGTGTACTTTGCGCACGGATGGGGCAAACTCAACTTCACCCTCTC
CCTCGGGCCCTCTCCATTCAACCAGCCATTTTCATGGCCGGTGCATCTCT
TGGATGAGCAAGAAATTGCTGGAGATCCTCGGGCTAACAAGAGTGGCACT
CCAGTGACTCCATATAACCCCGAATACAACCCAGACTGGTATGCCTACAC
TCCACTCCCATTCGCTATTATAGATTTGGGGGCAACATACCATTTGACGG
ACGTGTACTTTGCGCACGGATGGGGCAAACTCAACTTCACCCTCTCCCTC
GGGCCCTCTCCATTCAACCAGCCATTTTCATGGCCGGTGCATAATGTGAG
CGCAGGCAACGGAATGCCTGGAAACACATCTGGACGTTACCTCCTCCTCA
CCCTCCCAGCTACCACCGACTCCTCGCTGGTGGAGATTGTTGTGTATGGG
GAAAATGTGAGCGCAGGCAACGGAATGCCTGGAAACACATCTGGACGTTA
CCTCCTCCTCACCCTCCCAGCTACCACCGACTCCTCGCTGGTGGAGATTG
TTGTGTATGGGGAA
back to top