mRNA_M-pyrifera_M_contig97431.22441.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97431.22441.1
Unique NamemRNA_M-pyrifera_M_contig97431.22441.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig97431.22441.1 vs. uniprot
Match: A0A2E7K7A1_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K7A1_9PLAN)

HSP 1 Score: 407 bits (1047), Expect = 1.690e-141
Identity = 208/218 (95.41%), Postives = 208/218 (95.41%), Query Frame = 1
Query:    1 VDTERRIILTFALLKNATKVQIAYPQVPSRDKDSLVGSPAVILKYDGKMDVAYLQAKTMPQELVHLTASNAPQGGMPHRTASHKPTAPVPPVQGGHNGGQQXXXXXXXXQGNGGYTPPQQQSNPLVGKWYLQDVLNGVQIQIAVAFSAQGEFAMEVMAVDSNGQQKYDSDNGTYRINGNTLTVNTSDGVEQSKFWFENGVLYVQMVADGTTMAFQKAS 654
            VDTERRIILTFALLKNATKVQIAYPQVPSRDKDSLVGSPAVILKYDGKMDVAYLQAKTMPQELVHLTASNAPQGGMPHRTASHKPTAPVPPVQGGHNGG          QGNGGYTPPQQQSNPLVGKWYLQDVLNGVQIQIAVAFSAQGEFAMEVMAVDSNGQQKYDSDNGTYRINGNTLTVNTSDGVEQSKFWFENGVLYVQMVADGTTMAFQKAS
Sbjct:  127 VDTERRIILTFALLKNATKVQIAYPQVPSRDKDSLVGSPAVILKYDGKMDVAYLQAKTMPQELVHLTASNAPQGGMPHRTASHKPTAPVPPVQGGHNGG----FNGGQSQGNGGYTPPQQQSNPLVGKWYLQDVLNGVQIQIAVAFSAQGEFAMEVMAVDSNGQQKYDSDNGTYRINGNTLTVNTSDGVEQSKFWFENGVLYVQMVADGTTMAFQKAS 340          
BLAST of mRNA_M-pyrifera_M_contig97431.22441.1 vs. uniprot
Match: A0A2E7KBI1_9PLAN (Uncharacterized protein n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E7KBI1_9PLAN)

HSP 1 Score: 352 bits (903), Expect = 1.090e-120
Identity = 187/231 (80.95%), Postives = 198/231 (85.71%), Query Frame = 1
Query:    1 VDTERRIILTFALLKNATKVQIAYPQVPSRDKDSLVGSPAVILKYDGKMDVAYLQAKTMPQELVHLTASNAPQGGM-PHRTASHKPTAPVPPVQGGHNGGQQXXXXXXXXQGNG-----------GYTPPQQQ-SNPLVGKWYLQDVLNGVQIQIAVAFSAQGEFAMEVMAVDSNGQQKYDSDNGTYRINGNTLTVNTSDGVEQSKFWFENGVLYVQMVADGTTMAFQKAS 654
            VDTERRIILTFALLK+AT+VQIAYPQVPSRDKDSLVGSPAVILKYD KM+VAYLQAK+MPQELVHLT SNAPQGG  P RT SHKPTAPVPP QGGHNGGQQ     XXX                YTPPQQQ +NPLVGKWYLQD LNG+QIQIA+AF AQGEFAMEV+AVDSNGQQK+DSDNGTYR++GNTL VNTSDG EQSKFWFENGVLYVQMVADGTTMAFQKAS
Sbjct:   37 VDTERRIILTFALLKDATRVQIAYPQVPSRDKDSLVGSPAVILKYDSKMEVAYLQAKSMPQELVHLTTSNAPQGGATPQRTVSHKPTAPVPPAQGGHNGGQQGGFQGXXXXXXXXXXXXXXXXXXSYTPPQQQQANPLVGKWYLQDNLNGIQIQIAIAFGAQGEFAMEVLAVDSNGQQKHDSDNGTYRVSGNTLVVNTSDGAEQSKFWFENGVLYVQMVADGTTMAFQKAS 267          
BLAST of mRNA_M-pyrifera_M_contig97431.22441.1 vs. uniprot
Match: A0A2E7K8T4_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K8T4_9PLAN)

HSP 1 Score: 319 bits (818), Expect = 2.370e-106
Identity = 170/234 (72.65%), Postives = 187/234 (79.91%), Query Frame = 1
Query:    1 VDTERRIILTFALLKNATKVQIAYPQVPSRDKDSLVGSPAVILKYDGKMDVAYLQAKTMPQELVHLTASNAPQGGM-PHRTASHKPTAPVPPVQGGHNGGQQXXXXXXXXQGNGGY---------------TPPQQQSNPLVGKWYLQDVLNGVQIQIAVAFSAQGEFAMEVMAVDSNGQQKYDSDNGTYRINGNTLTVNTSDGVEQSKFWFENGVLYVQMVADGTTMAFQKAS 654
            VDTERRIILTFAL+K+AT+V IAYPQVPS DKDS++GSPAVIL+YD KMDVAYLQAKTMPQ L HLT SNAPQ    P RT SHKPTAP+PP QGGHNGGQQ     XXX                     TPPQQQ+NPLVGKWYLQDV+NG QIQIAVAF AQG+FAMEVM+VD+ GQQ YDSDNGTY I GNTLTVNTSDG EQS+FWFENGVLYVQ+VA+GTT AFQ+A+
Sbjct:  131 VDTERRIILTFALMKDATRVHIAYPQVPSDDKDSMIGSPAVILQYDTKMDVAYLQAKTMPQGLAHLTTSNAPQTRPEPQRTVSHKPTAPMPPAQGGHNGGQQGHFNGXXXXXXXXXXXXXXXXXXXXXXXXTPPQQQANPLVGKWYLQDVVNGTQIQIAVAFGAQGQFAMEVMSVDAYGQQNYDSDNGTYTIQGNTLTVNTSDGPEQSRFWFENGVLYVQLVANGTTFAFQQAA 364          
BLAST of mRNA_M-pyrifera_M_contig97431.22441.1 vs. uniprot
Match: A0A2E2CB26_9PLAN (Uncharacterized protein (Fragment) n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2CB26_9PLAN)

HSP 1 Score: 206 bits (524), Expect = 3.060e-65
Identity = 103/123 (83.74%), Postives = 108/123 (87.80%), Query Frame = 1
Query:  286 HNGGQQXXXXXXXXQGNGGYTPPQQQSNPLVGKWYLQDVLNGVQIQIAVAFSAQGEFAMEVMAVDSNGQQKYDSDNGTYRINGNTLTVNTSDGVEQSKFWFENGVLYVQMVADGTTMAFQKAS 654
            HNGGQ          GNGGYTPPQQQSNPLVGKWYLQD LNG QIQIAVAF AQGEFAMEV+AVDSNGQQK+DSDNGTYR++GNTL VNTSDG EQSKFWFENGVLYVQ+VADGTTMAFQKAS
Sbjct:    1 HNGGQ------FQGNGNGGYTPPQQQSNPLVGKWYLQDNLNGTQIQIAVAFGAQGEFAMEVLAVDSNGQQKHDSDNGTYRVSGNTLVVNTSDGAEQSKFWFENGVLYVQLVADGTTMAFQKAS 117          
BLAST of mRNA_M-pyrifera_M_contig97431.22441.1 vs. uniprot
Match: A0A517QMR8_9PLAN (Uncharacterized protein n=1 Tax=Thalassoglobus polymorphus TaxID=2527994 RepID=A0A517QMR8_9PLAN)

HSP 1 Score: 213 bits (543), Expect = 5.610e-65
Identity = 116/225 (51.56%), Postives = 147/225 (65.33%), Query Frame = 1
Query:    1 VDTERRIILTFALLKNATKVQIAYPQVPSRDKDSLVGSPAVILKYDGKMDVAYLQAKTMPQELVHLTASNAPQGGMPHR-TASHKPTAPVPPVQGGHN------GGQQXXXXXXXXQGNGGYTPPQQQSNPLVGKWYLQDVLNGVQIQIAVAFSAQGEFAMEVMAVDSNGQQKYDSDNGTYRINGNTLTVNTSDGVEQSKFWFENGVLYVQMVADGTTMAFQKAS 654
            VDT+RRII+TF L+K A K+Q+AYPQV     D + GS  V+LK+D  M+  YLQA  MP+ L +LTAS        +R   ++KPTAP PP  GG N      GGQQ           GG+  P Q  NPLVG+WYLQD +NG +IQI VAF AQG++AME++AVD  GQQ ++S  GTY I GNTL +N+ DG+E+S F FENG L+V + AD TT+ FQ AS
Sbjct:  136 VDTQRRIIMTFNLIKGAEKIQVAYPQVTDVPDDKVSGSTVVVLKHDSDMEFVYLQANFMPETLANLTASAPSTSQTANRPVVANKPTAPTPPTGGGLNNGGFNTGGQQ-----------GGFQRPAQSHNPLVGRWYLQDTVNGTRIQIGVAFDAQGQYAMEMVAVDGYGQQSHNSTFGTYTIQGNTLIINSEDGIERSNFRFENGQLHVYLAADDTTLIFQPAS 349          
BLAST of mRNA_M-pyrifera_M_contig97431.22441.1 vs. uniprot
Match: A0A5C5X345_9PLAN (Uncharacterized protein n=1 Tax=Thalassoglobus neptunius TaxID=1938619 RepID=A0A5C5X345_9PLAN)

HSP 1 Score: 123 bits (308), Expect = 9.530e-30
Identity = 54/97 (55.67%), Postives = 76/97 (78.35%), Query Frame = 1
Query:  361 QSNPLVGKWYLQDVLNGVQIQIAVAFSAQGEFAMEVMAVDSNGQQKYDSDNGTYRINGNTLTVNTSDGVEQSKFWFENGVLYVQMVADGTTMAFQKA 651
            Q+NP+VG+WYLQD +NGVQ+ I V F+AQG+F+++++ VD  GQ+  ++DNG++R+ GNTL +N  DG +Q  FWFENG+L+VQ    GTTMAF KA
Sbjct:  292 QNNPVVGQWYLQDTVNGVQLYIGVTFNAQGQFSLQMVTVDGYGQKSQENDNGSFRVQGNTLFLNGGDGPQQLPFWFENGMLFVQFPELGTTMAFHKA 388          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97431.22441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2E7K7A1_9PLAN1.690e-14195.41Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
A0A2E7KBI1_9PLAN1.090e-12080.95Uncharacterized protein n=3 Tax=Planctomycetaceae ... [more]
A0A2E7K8T4_9PLAN2.370e-10672.65Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
A0A2E2CB26_9PLAN3.060e-6583.74Uncharacterized protein (Fragment) n=3 Tax=Plancto... [more]
A0A517QMR8_9PLAN5.610e-6551.56Uncharacterized protein n=1 Tax=Thalassoglobus pol... [more]
A0A5C5X345_9PLAN9.530e-3055.67Uncharacterized protein n=1 Tax=Thalassoglobus nep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97431contigM-pyrifera_M_contig97431:54..710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size657
Cds size657
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816891.169914-CDS-M-pyrifera_M_contig97431:53..7101622816891.169914-CDS-M-pyrifera_M_contig97431:53..710Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97431 54..710 -
1692278239.4226544-CDS-M-pyrifera_M_contig97431:53..7101692278239.4226544-CDS-M-pyrifera_M_contig97431:53..710Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97431 54..710 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97431.22441.1prot_M-pyrifera_M_contig97431.22441.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97431 54..710 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97431.22441.1

>prot_M-pyrifera_M_contig97431.22441.1 ID=prot_M-pyrifera_M_contig97431.22441.1|Name=mRNA_M-pyrifera_M_contig97431.22441.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=219bp
VDTERRIILTFALLKNATKVQIAYPQVPSRDKDSLVGSPAVILKYDGKMD
VAYLQAKTMPQELVHLTASNAPQGGMPHRTASHKPTAPVPPVQGGHNGGQ
QGGFNGGQSQGNGGYTPPQQQSNPLVGKWYLQDVLNGVQIQIAVAFSAQG
EFAMEVMAVDSNGQQKYDSDNGTYRINGNTLTVNTSDGVEQSKFWFENGV
LYVQMVADGTTMAFQKAS*
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mRNA from alignment at M-pyrifera_M_contig97431:54..710-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97431.22441.1 ID=mRNA_M-pyrifera_M_contig97431.22441.1|Name=mRNA_M-pyrifera_M_contig97431.22441.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=657bp|location=Sequence derived from alignment at M-pyrifera_M_contig97431:54..710- (Macrocystis pyrifera P11B4 male)
GTCGATACGGAACGTCGGATTATCCTGACCTTCGCTCTGCTCAAAAATGC CACCAAGGTTCAAATTGCCTACCCCCAGGTACCTTCCCGTGACAAGGATT CGCTGGTCGGTTCTCCCGCTGTGATCCTGAAGTACGACGGCAAGATGGAT GTGGCTTATCTGCAGGCGAAAACAATGCCTCAGGAACTCGTCCACCTGAC AGCTTCAAACGCACCACAGGGTGGCATGCCTCACCGCACTGCCAGCCACA AACCAACTGCACCAGTGCCTCCTGTTCAGGGTGGTCACAATGGCGGGCAG CAAGGTGGCTTCAATGGTGGTCAGTCTCAGGGAAATGGTGGATACACACC TCCCCAGCAGCAGTCGAACCCGCTCGTCGGAAAATGGTATCTGCAGGATG TTTTGAACGGAGTACAGATTCAGATCGCCGTCGCCTTCAGTGCTCAAGGA GAGTTTGCGATGGAAGTAATGGCTGTCGACTCCAACGGCCAACAGAAATA TGACTCCGACAATGGAACGTACAGAATCAACGGCAATACTCTGACCGTGA ACACCAGCGATGGTGTGGAACAGTCAAAGTTCTGGTTTGAAAATGGTGTC CTGTATGTGCAGATGGTTGCTGACGGAACCACCATGGCTTTCCAGAAAGC ATCGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig97431:54..710-

>mRNA_M-pyrifera_M_contig97431.22441.1 ID=mRNA_M-pyrifera_M_contig97431.22441.1|Name=mRNA_M-pyrifera_M_contig97431.22441.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1314bp|location=Sequence derived from alignment at M-pyrifera_M_contig97431:54..710- (Macrocystis pyrifera P11B4 male)
GTCGATACGGAACGTCGGATTATCCTGACCTTCGCTCTGCTCAAAAATGC
CACCAAGGTTCAAATTGCCTACCCCCAGGTACCTTCCCGTGACAAGGATT
CGCTGGTCGGTTCTCCCGCTGTGATCCTGAAGTACGACGGCAAGATGGAT
GTGGCTTATCTGCAGGCGAAAACAATGCCTCAGGAACTCGTCCACCTGAC
AGCTTCAAACGCACCACAGGGTGGCATGCCTCACCGCACTGCCAGCCACA
AACCAACTGCACCAGTGCCTCCTGTTCAGGGTGGTCACAATGGCGGGCAG
CAAGGTGGCTTCAATGGTGGTCAGTCTCAGGGAAATGGTGGATACACACC
TCCCCAGCAGCAGTCGAACCCGCTCGTCGGAAAATGGTATCTGCAGGATG
TTTTGAACGGAGTACAGATTCAGATCGCCGTCGCCTTCAGTGCTCAAGGA
GAGTTTGCGATGGAAGTAATGGCTGTCGACTCCAACGGCCAACAGAAATA
TGACTCCGACAATGGAACGTACAGAATCAACGGCAATACTCTGACCGTGA
ACACCAGCGATGGTGTGGAACAGTCAAAGTTCTGGTTTGAAAATGGTGTC
CTGTATGTGCAGATGGTTGCTGACGGAACCACCATGGCTTTCCAGAAAGC
ATCGTAAGTCGATACGGAACGTCGGATTATCCTGACCTTCGCTCTGCTCA
AAAATGCCACCAAGGTTCAAATTGCCTACCCCCAGGTACCTTCCCGTGAC
AAGGATTCGCTGGTCGGTTCTCCCGCTGTGATCCTGAAGTACGACGGCAA
GATGGATGTGGCTTATCTGCAGGCGAAAACAATGCCTCAGGAACTCGTCC
ACCTGACAGCTTCAAACGCACCACAGGGTGGCATGCCTCACCGCACTGCC
AGCCACAAACCAACTGCACCAGTGCCTCCTGTTCAGGGTGGTCACAATGG
CGGGCAGCAAGGTGGCTTCAATGGTGGTCAGTCTCAGGGAAATGGTGGAT
ACACACCTCCCCAGCAGCAGTCGAACCCGCTCGTCGGAAAATGGTATCTG
CAGGATGTTTTGAACGGAGTACAGATTCAGATCGCCGTCGCCTTCAGTGC
TCAAGGAGAGTTTGCGATGGAAGTAATGGCTGTCGACTCCAACGGCCAAC
AGAAATATGACTCCGACAATGGAACGTACAGAATCAACGGCAATACTCTG
ACCGTGAACACCAGCGATGGTGTGGAACAGTCAAAGTTCTGGTTTGAAAA
TGGTGTCCTGTATGTGCAGATGGTTGCTGACGGAACCACCATGGCTTTCC
AGAAAGCATCGTAA
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