mRNA_M-pyrifera_M_contig9739.22434.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9739.22434.1
Unique NamemRNA_M-pyrifera_M_contig9739.22434.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9739.22434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9739contigM-pyrifera_M_contig9739:5337..6154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size818
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9739.22434.1prot_M-pyrifera_M_contig9739.22434.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9739 5408..5833 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816890.8102548-UTR-M-pyrifera_M_contig9739:5336..54071622816890.8102548-UTR-M-pyrifera_M_contig9739:5336..5407Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9739 5337..5407 +
1692278239.219401-UTR-M-pyrifera_M_contig9739:5336..54071692278239.219401-UTR-M-pyrifera_M_contig9739:5336..5407Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9739 5337..5407 +
1622816890.8349621-UTR-M-pyrifera_M_contig9739:5833..61541622816890.8349621-UTR-M-pyrifera_M_contig9739:5833..6154Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9739 5834..6154 +
1692278239.238257-UTR-M-pyrifera_M_contig9739:5833..61541692278239.238257-UTR-M-pyrifera_M_contig9739:5833..6154Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9739 5834..6154 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816890.821888-CDS-M-pyrifera_M_contig9739:5407..58331622816890.821888-CDS-M-pyrifera_M_contig9739:5407..5833Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9739 5408..5833 +
1692278239.2289913-CDS-M-pyrifera_M_contig9739:5407..58331692278239.2289913-CDS-M-pyrifera_M_contig9739:5407..5833Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9739 5408..5833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9739.22434.1

>prot_M-pyrifera_M_contig9739.22434.1 ID=prot_M-pyrifera_M_contig9739.22434.1|Name=mRNA_M-pyrifera_M_contig9739.22434.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
MLVQMRYRVRLVGLACCTVLVAWTNVCEACTRHAGVGCSLVVVRMYCCTY
DCNVCVRKSCVVVLEGTLNTAALRKAVRDGYERLVKFFLRVTYSSREPEC
LVGGGRGPPFQAVGLFCFGQRASAPLDVCPHPLIMWHVCAD*
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mRNA from alignment at M-pyrifera_M_contig9739:5337..6154+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9739.22434.1 ID=mRNA_M-pyrifera_M_contig9739.22434.1|Name=mRNA_M-pyrifera_M_contig9739.22434.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=818bp|location=Sequence derived from alignment at M-pyrifera_M_contig9739:5337..6154+ (Macrocystis pyrifera P11B4 male)
GCCTCCTCGGAGGTGATCGACCTCTTGTCGGACAGCGACGAGGGTTTATA
GGAAGGAGCCTGCCTCCAAGTATGCTCGTGCAAATGAGATACAGAGTACG
GTTGGTTGGTTTAGCCTGTTGTACGGTGCTCGTGGCATGGACAAACGTTT
GCGAAGCATGCACACGTCATGCAGGCGTGGGTTGTTCCCTGGTGGTTGTG
CGGATGTACTGCTGTACGTACGACTGTAATGTTTGCGTGCGAAAATCTTG
CGTGGTTGTTTTAGAGGGAACGCTGAACACCGCAGCGCTTAGGAAAGCGG
TACGGGATGGGTACGAGAGGCTCGTAAAGTTTTTTTTGCGTGTTACTTAC
AGTAGCAGAGAACCAGAGTGCCTCGTGGGAGGGGGTCGAGGGCCGCCATT
TCAGGCGGTTGGTTTGTTTTGTTTCGGACAACGGGCTAGCGCTCCATTGG
ATGTCTGTCCCCACCCCTTAATCATGTGGCATGTGTGTGCTGACTAGTTT
TACGACGGCAAGCACGGCGTGTTTGCTGTTGACAGTACACATGGAGCTTC
ACCTTCAACAGTGCCTCGTAATATCGTCCGGCGACTGTTGTAGCATATTT
TATGGCCACAGGCGACGTCGTTCCTTTATCCAGCCACATGTGGAAGACTG
CCCGTTTTTTCTGTGCTTTGTGTTTTTGCGCCCCAAACGCGTCCGTTAAC
CAGTGGTGGCCTGTCGCCAGCGGAACGCCGATAAACTGTAATGTAAACAA
GGTATAATACGAGTACATTTTTCTTGTTACGCAGAAGCACGTTTCCGATC
GGCGGCATTGTGTCCGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9739:5337..6154+

>mRNA_M-pyrifera_M_contig9739.22434.1 ID=mRNA_M-pyrifera_M_contig9739.22434.1|Name=mRNA_M-pyrifera_M_contig9739.22434.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig9739:5337..6154+ (Macrocystis pyrifera P11B4 male)
ATGCTCGTGCAAATGAGATACAGAGTACGGTTGGTTGGTTTAGCCTGTTG
TACGGTGCTCGTGGCATGGACAAACGTTTGCGAAGCATGCACACGTCATG
CAGGCGTGGGTTGTTCCCTGGTGGTTGTGCGGATGTACTGCTGTACGTAC
GACTGTAATGTTTGCGTGCGAAAATCTTGCGTGGTTGTTTTAGAGGGAAC
GCTGAACACCGCAGCGCTTAGGAAAGCGGTACGGGATGGGTACGAGAGGC
TCGTAAAGTTTTTTTTGCGTGTTACTTACAGTAGCAGAGAACCAGAGTGC
CTCGTGGGAGGGGGTCGAGGGCCGCCATTTCAGGCGGTTGGTTTGTTTTG
TTTCGGACAACGGGCTAGCGCTCCATTGGATGTCTGTCCCCACCCCTTAA
TCATGTGGCATGTGTGTGCTGACTAGATGCTCGTGCAAATGAGATACAGA
GTACGGTTGGTTGGTTTAGCCTGTTGTACGGTGCTCGTGGCATGGACAAA
CGTTTGCGAAGCATGCACACGTCATGCAGGCGTGGGTTGTTCCCTGGTGG
TTGTGCGGATGTACTGCTGTACGTACGACTGTAATGTTTGCGTGCGAAAA
TCTTGCGTGGTTGTTTTAGAGGGAACGCTGAACACCGCAGCGCTTAGGAA
AGCGGTACGGGATGGGTACGAGAGGCTCGTAAAGTTTTTTTTGCGTGTTA
CTTACAGTAGCAGAGAACCAGAGTGCCTCGTGGGAGGGGGTCGAGGGCCG
CCATTTCAGGCGGTTGGTTTGTTTTGTTTCGGACAACGGGCTAGCGCTCC
ATTGGATGTCTGTCCCCACCCCTTAATCATGTGGCATGTGTGTGCTGACT
AG
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