mRNA_M-pyrifera_M_contig9739.22433.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9739.22433.1
Unique NamemRNA_M-pyrifera_M_contig9739.22433.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9739.22433.1 vs. uniprot
Match: A0A6H5JHZ8_9PHAE (RING-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ8_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.360e-13
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:   61 RRVVSSLSTLCVKDLYVEPTELDCEGKHLFCHKCIYGVLSSEGCTNKCPVCNTKISNKRKSTIL 252
            + + + L+     DL+V+P ELDC+GKHL+CH CIY ++ +E C NKCP C T IS+  +  IL
Sbjct:  128 QEITTRLACPMCYDLFVDPIELDCKGKHLYCHSCIYDLVKNESCQNKCPTCMTSISSSTRKKIL 191
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BLAST of mRNA_M-pyrifera_M_contig9739.22433.1 vs. uniprot
Match: D7FQD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD6_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.770e-13
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:  100 DLYVEPTELDCEGKHLFCHKCIYGVLSSEGCTNKCPVCNTKISNKRKSTIL 252
            DL+V+P ELDC+GKHL+CH CIY ++ +  C NKCP+C T IS+  +  IL
Sbjct:    4 DLFVDPIELDCKGKHLYCHSCIYDLVKNGSCQNKCPICMTSISSSTRKKIL 54
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9739.22433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHZ8_9PHAE1.360e-1346.88RING-type domain-containing protein (Fragment) n=1... [more]
D7FQD6_ECTSI2.770e-1354.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9739contigM-pyrifera_M_contig9739:4513..4770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-01_006510.1
Exons1
Model size260
Cds size258
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816890.8668647-CDS-M-pyrifera_M_contig9739:4512..47701622816890.8668647-CDS-M-pyrifera_M_contig9739:4512..4770Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9739 4513..4770 +
1692278239.2484818-CDS-M-pyrifera_M_contig9739:4512..47701692278239.2484818-CDS-M-pyrifera_M_contig9739:4512..4770Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9739 4513..4770 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9739.22433.1prot_M-pyrifera_M_contig9739.22433.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9739 4513..4770 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9739.22433.1

>prot_M-pyrifera_M_contig9739.22433.1 ID=prot_M-pyrifera_M_contig9739.22433.1|Name=mRNA_M-pyrifera_M_contig9739.22433.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=86bp
MLFFIAGVRRPQLIPLRAFFRRVVSSLSTLCVKDLYVEPTELDCEGKHLF
CHKCIYGVLSSEGCTNKCPVCNTKISNKRKSTILKT
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mRNA from alignment at M-pyrifera_M_contig9739:4513..4770+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9739.22433.1 ID=mRNA_M-pyrifera_M_contig9739.22433.1|Name=mRNA_M-pyrifera_M_contig9739.22433.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig9739:4513..4770+ (Macrocystis pyrifera P11B4 male)
ATGTTGTTTTTCATCGCCGGTGTCCGGCGACCGCAATTAATCCCTTTGCG
TGCGTTTTTCCGCCGGGTTGTGTCATCATTGTCAACCCTCTGTGTGAAGG
ACCTTTACGTCGAACCTACGGAGCTGGATTGCGAGGGCAAGCACCTTTTT
TGCCACAAGTGCATCTACGGCGTTTTGAGCAGCGAAGGGTGCACCAACAA
GTGTCCCGTCTGCAACACCAAGATCTCAAATAAACGAAAAAGTACCATCC
TGAAGACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9739:4513..4770+

>mRNA_M-pyrifera_M_contig9739.22433.1 ID=mRNA_M-pyrifera_M_contig9739.22433.1|Name=mRNA_M-pyrifera_M_contig9739.22433.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig9739:4513..4770+ (Macrocystis pyrifera P11B4 male)
ATGTTGTTTTTCATCGCCGGTGTCCGGCGACCGCAATTAATCCCTTTGCG
TGCGTTTTTCCGCCGGGTTGTGTCATCATTGTCAACCCTCTGTGTGAAGG
ACCTTTACGTCGAACCTACGGAGCTGGATTGCGAGGGCAAGCACCTTTTT
TGCCACAAGTGCATCTACGGCGTTTTGAGCAGCGAAGGGTGCACCAACAA
GTGTCCCGTCTGCAACACCAAGATCTCAAATAAACGAAAAAGTACCATCC
TGAAGACCATGTTGTTTTTCATCGCCGGTGTCCGGCGACCGCAATTAATC
CCTTTGCGTGCGTTTTTCCGCCGGGTTGTGTCATCATTGTCAACCCTCTG
TGTGAAGGACCTTTACGTCGAACCTACGGAGCTGGATTGCGAGGGCAAGC
ACCTTTTTTGCCACAAGTGCATCTACGGCGTTTTGAGCAGCGAAGGGTGC
ACCAACAAGTGTCCCGTCTGCAACACCAAGATCTCAAATAAACGAAAAAG
TACCATCCTGAAGACC
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