mRNA_M-pyrifera_M_contig97377.22431.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97377.22431.1
Unique NamemRNA_M-pyrifera_M_contig97377.22431.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig97377.22431.1 vs. uniprot
Match: A0A848X5F7_9BACT (Uncharacterized protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A848X5F7_9BACT)

HSP 1 Score: 67.8 bits (164), Expect = 9.810e-10
Identity = 45/106 (42.45%), Postives = 61/106 (57.55%), Query Frame = 1
Query:  274 GVDVNLRQLSLTETALDVAARMGDVDSVKLLLRYGADVNAGDWEGHTALHRAAFHNKAGVIEALVGAGADVHALGRTDKRTPLHVAAGIRAVSAARALLHHGASAN 591
            GV + L   +  E+ +  AA+ GDV+ ++ LLR GADVNA   +G TALH AA ++  G +E ++ AGA V  L R    TPLH+AA     +   ALL  GA  N
Sbjct:   14 GVSLLLAAAAPLESPVADAAQAGDVEQLRTLLRQGADVNAPQADGLTALHWAALNDDLGTLEVVLYAGATVRPLTRVGGYTPLHLAARSGHPAIVEALLEAGADPN 119          
BLAST of mRNA_M-pyrifera_M_contig97377.22431.1 vs. uniprot
Match: A0A7M7PEX0_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7PEX0_STRPU)

HSP 1 Score: 63.9 bits (154), Expect = 1.010e-8
Identity = 56/186 (30.11%), Postives = 87/186 (46.77%), Query Frame = 1
Query:    4 GSTALHDAALNNNVDAIRVLVKAGADVNVQGPFGVAPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKHAVLNGSLCAMKALLDAGGVDVNLRQLS-LTETALDVAARMGDVDSVKLLLRY------GAD----VNAGDWEGHTALHRAAFHNKAGVIEALVGAGADVHALGRTDKRTPLHV 528
            G  ALHDA +  +++AI++L+ AGADV+V+      PL                                +  A L G L  +K +LD  G+   +   + + +  L  AA++G++D V+LLL        G D    V+  D +G T LH A     + VIEAL+ AGAD++ +   D +T LH+
Sbjct:   22 GKGALHDACVKGDLNAIKLLINAGADVDVKSTNNSTPLLLAAEYGHQSCVEELISYGADPTKRDNDGDSLVHVASLGGGLETLKFVLDLEGMSKLISSKNNVGQIPLHSAAKVGNIDCVELLLAQDTRQEDGEDSCFLVDEQDSQGKTPLHLAVEGGFSPVIEALIEAGADLN-IQNNDGKTCLHL 206          
BLAST of mRNA_M-pyrifera_M_contig97377.22431.1 vs. uniprot
Match: A0A7Y3I6N1_9BACT (Uncharacterized protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7Y3I6N1_9BACT)

HSP 1 Score: 64.7 bits (156), Expect = 1.120e-8
Identity = 48/125 (38.40%), Postives = 65/125 (52.00%), Query Frame = 1
Query:  223 AVLNGSLCAMKALLDAGGVDVNLRQLSLTETALDVAARMGDVDSVKLLLRYGADVNAGDWEGHTALHRAAFHNKAGVIEALVGAGADVHALGRTDKRTPLHVAAGIRAVSAARALLHHGASANAL 597
            AV      A  A+   G VD  +            AA  GD+++V+ LLR GADVNA   +G +ALH AA +  A +IE LV AGA +    R    TPLH+A+     +A +AL+  GAS  A+
Sbjct:   24 AVFGSGPAAAPAVAVVGSVDAPVAD----------AAERGDLEAVRALLRDGADVNASQGDGMSALHWAAMNGDADMIEVLVYAGATLEGTTRLGGYTPLHLASHRGLSAAVQALVAAGASTGAM 138          
BLAST of mRNA_M-pyrifera_M_contig97377.22431.1 vs. uniprot
Match: A0A848XBQ0_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A848XBQ0_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 5.220e-8
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = 1
Query:  304 LTETALDVAARMGDVDSVKLLLRYGADVNAGDWEGHTALHRAAFHNKAGVIEALVGAGADVHALGRTDKRTPLHVAA 534
            + E+ +  AA  GDVD+V+ LLR GADVNA   +G +ALH  A  +   VIE L+ AGA+  A  R    TPLH+AA
Sbjct:   16 VAESPVADAAERGDVDTVRELLRDGADVNAAQSDGTSALHWGAIRDDVAVIEVLLYAGANTEATTRLGGYTPLHLAA 92          
BLAST of mRNA_M-pyrifera_M_contig97377.22431.1 vs. uniprot
Match: D8LH19_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH19_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 8.650e-8
Identity = 49/116 (42.24%), Postives = 61/116 (52.59%), Query Frame = 1
Query:  301 SLTETALDVAARMGDVDSVKLLLRYGADVNAGDWEGHTALHRAAFHNKAGVIEALVGAGADVHAL-------GRTDKR---TPLHVAAGIRAVSAARA--LLHHGASANALDVSGQ 612
            SL  + L +A    +    + LL++GADV + D  G TALH AA+  K  VIEALVGAGAD+ A        G  D     TPLH+AA  R  +  R   LL  GA  NA D  G+
Sbjct:  238 SLKFSPLQLACSSREAAMTRALLKHGADVKSCDGFGFTALHWAAYRGKPCVIEALVGAGADLEARSSQVWLPGHRDSHVGLTPLHIAAFFRRSNTPRMALLLQRGADVNAADGHGR 353          
BLAST of mRNA_M-pyrifera_M_contig97377.22431.1 vs. uniprot
Match: A0A7R9A6H0_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R9A6H0_9CRUS)

HSP 1 Score: 61.6 bits (148), Expect = 1.280e-7
Identity = 65/152 (42.76%), Postives = 83/152 (54.61%), Query Frame = 1
Query:   10 TALHDAALNNNVDAIRVLVKAGADVNVQGPFGVAPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKHAVLNGSLCAMKALLDAGGVDVNLRQLSLTETALDVAARMGDVDSVKLLLRYGADVNAGDWEGHTALHRAAFHNKAGVIEAL 465
            T L  AA+  N++ ++ L+KAGAD+N     G  P+         XXXXXXXXXXXXXXXXX      L +AV +  LC    LL   G  VN + + L +TAL  A +   +DSVK+LLRYGAD       G  ALH A  H    V++ L
Sbjct:  144 TPLWCAAVTGNLNVVKRLIKAGADINAVSDSGSTPVRSACFMTHHXXXXXXXXXXXXXXXXXYNGGTCLINAVQSAPLCR---LLLQSGARVNAQDIQL-KTALHYAIQEHRLDSVKVLLRYGADPMLRSRHGDDALHTACLHGSVEVLDFL 291          
BLAST of mRNA_M-pyrifera_M_contig97377.22431.1 vs. uniprot
Match: A0A6L7R7G9_9BACT (Uncharacterized protein n=3 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A6L7R7G9_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 1.300e-7
Identity = 42/91 (46.15%), Postives = 52/91 (57.14%), Query Frame = 1
Query:  250 MKALLDAGGVDVNLRQLSLTETALDVAARMGDVDSVKLLLRYGADVNAGDWEGHTALHRAAFHNKAGVIEALVGAGADVHALGRTDKRTPL 522
            + ALL A G+ V     +L    LD AA+ GD++S+K  LR GADVNA   +G TALH AA     GV E L+ AGAD+ A  R     PL
Sbjct:   47 LAALLCALGLVVGAGSAALAPV-LD-AAKRGDIESLKAELRSGADVNAAQGDGFTALHWAAKLGNRGVAEVLIAAGADIKATTRIGSHMPL 135          
BLAST of mRNA_M-pyrifera_M_contig97377.22431.1 vs. uniprot
Match: A0A2C9JPU2_BIOGL (SOCS box domain-containing protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9JPU2_BIOGL)

HSP 1 Score: 60.8 bits (146), Expect = 2.000e-7
Identity = 80/202 (39.60%), Postives = 111/202 (54.95%), Query Frame = 1
Query:    1 NGSTALHDAALNNNVDAIRVLVKAGADVNVQGPFGVAPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKHAVLNGSLCAMKALLDAGGVDVNLRQLSLTETALDVAARMGDVDSVKLLLRYGADVNAGDWEGHTALHRAAFHNKAG--VIEALVGAGADVHALGRTDKRTPLHVAAGIRAVSAARALLHHGASANALD 600
            NG+++LH A    N+  + +L+K GA VN+ G       XXXXXXXXXXXXXXXXXXXXXX          L+ A+ + +L  +  L+ AG  +V+ R        L  A+  G+++ +K+L +YGAD+N  D  G   L  A +   AG   +E L+  GAD+HA     K T LH A  ++ V   R LL +GA  NA D
Sbjct:  106 NGNSSLHLACQKVNIPVVELLLKHGASVNIAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSPEGLP---LEIALRDSALEILYLLIQAGA-NVHKRPY------LTHASEYGNIELMKVLYQYGADINKTDSLGMNPLQIACYSQTAGSETVELLLHWGADIHACSHM-KETALHYACSLQDVKKVRLLLAYGADVNAQD 296          
BLAST of mRNA_M-pyrifera_M_contig97377.22431.1 vs. uniprot
Match: A0A2V0PHQ9_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PHQ9_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 3.050e-7
Identity = 48/126 (38.10%), Postives = 61/126 (48.41%), Query Frame = 1
Query:  313 TALDVAARMGDVDSVKLLLRYGADVNAGDWE--------GHTALHRAAFHNKAGVIEALVGAGADVHALGRTDKR-------------------TPLHVAAGIRAVSAARALLHHGASANALDVSG 609
            TAL VAA  G +D + LL+  GA + A D+         G TALH AA H++AG ++AL+ AGADV+     D                     TPLHVAA    V   R L+  GAS +  D SG
Sbjct:  230 TALMVAAAAGQLDVLALLVEAGASLAARDFPDRWVVRRPGWTALHHAARHDRAGAVQALIRAGADVNVASGVDASDDEGDAEMSAPRHVGDELATPLHVAAQYAGVDLLRLLIDSGASVSVQDRSG 355          
BLAST of mRNA_M-pyrifera_M_contig97377.22431.1 vs. uniprot
Match: A0A7X4II74_9BACT (Uncharacterized protein n=6 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7X4II74_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 3.090e-7
Identity = 39/90 (43.33%), Postives = 48/90 (53.33%), Query Frame = 1
Query:  250 MKALLDAGGVDVNLRQLSLTETALDVAARMGDVDSVKLLLRYGADVNAGDWEGHTALHRAAFHNKAGVIEALVGAGADVHALGRTDKRTP 519
            + ALL   GV       +L    LD AA+ GDV+++K  LR GADVNA   +G TALH AA      + E L+ AGAD  A  R    TP
Sbjct:   10 LAALLTVLGVLAGAGSAALLSPVLD-AAKRGDVEALKAELRAGADVNAAQGDGFTALHWAAKTGNREIAEVLIAAGADTEATTRLGSHTP 98          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97377.22431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A848X5F7_9BACT9.810e-1042.45Uncharacterized protein n=2 Tax=Gemmatimonadetes b... [more]
A0A7M7PEX0_STRPU1.010e-830.11Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]
A0A7Y3I6N1_9BACT1.120e-838.40Uncharacterized protein n=2 Tax=Gemmatimonadetes b... [more]
A0A848XBQ0_9BACT5.220e-848.05Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
D8LH19_ECTSI8.650e-842.24Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
A0A7R9A6H0_9CRUS1.280e-742.76Hypothetical protein n=1 Tax=Darwinula stevensoni ... [more]
A0A6L7R7G9_9BACT1.300e-746.15Uncharacterized protein n=3 Tax=Acidobacteria bact... [more]
A0A2C9JPU2_BIOGL2.000e-739.60SOCS box domain-containing protein n=1 Tax=Biompha... [more]
A0A2V0PHQ9_9CHLO3.050e-738.10Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A7X4II74_9BACT3.090e-743.33Uncharacterized protein n=6 Tax=Acidobacteria bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97377contigM-pyrifera_M_contig97377:94..708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score78.2
Seed ortholog evalue5e-12
Seed eggNOG ortholog234267.Acid_1210
KEGG rclassRC00064,RC00328
KEGG koko:K06015
KEGG ReactionR02192
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM Prenyltransferase squalene oxidase
EggNOG OGsCOG0666@1,COG0666@2,COG1657@1,COG1657@2
EC3.5.1.81
COG Functional cat.I
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size615
Cds size615
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816890.739796-CDS-M-pyrifera_M_contig97377:93..7081622816890.739796-CDS-M-pyrifera_M_contig97377:93..708Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97377 94..708 +
1692278239.192086-CDS-M-pyrifera_M_contig97377:93..7081692278239.192086-CDS-M-pyrifera_M_contig97377:93..708Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97377 94..708 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97377.22431.1prot_M-pyrifera_M_contig97377.22431.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97377 94..708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97377.22431.1

>prot_M-pyrifera_M_contig97377.22431.1 ID=prot_M-pyrifera_M_contig97377.22431.1|Name=mRNA_M-pyrifera_M_contig97377.22431.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=205bp
NGSTALHDAALNNNVDAIRVLVKAGADVNVQGPFGVAPLHFASQKNFPES
VAALCAFGADRNATNLLGNTPLKHAVLNGSLCAMKALLDAGGVDVNLRQL
SLTETALDVAARMGDVDSVKLLLRYGADVNAGDWEGHTALHRAAFHNKAG
VIEALVGAGADVHALGRTDKRTPLHVAAGIRAVSAARALLHHGASANALD
VSGQS
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mRNA from alignment at M-pyrifera_M_contig97377:94..708+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97377.22431.1 ID=mRNA_M-pyrifera_M_contig97377.22431.1|Name=mRNA_M-pyrifera_M_contig97377.22431.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=615bp|location=Sequence derived from alignment at M-pyrifera_M_contig97377:94..708+ (Macrocystis pyrifera P11B4 male)
AACGGATCTACAGCTCTGCACGACGCGGCCTTGAACAACAACGTCGACGC GATCAGGGTGCTCGTGAAAGCTGGGGCGGATGTTAACGTGCAGGGGCCAT TCGGGGTGGCGCCTCTGCACTTTGCTTCGCAGAAGAACTTTCCCGAGTCC GTGGCAGCTCTGTGCGCGTTCGGAGCAGACAGGAACGCGACAAACTTGCT CGGCAACACGCCACTCAAACACGCGGTCTTGAACGGGAGCTTGTGCGCGA TGAAAGCTCTCCTAGACGCTGGCGGCGTGGATGTTAACCTTCGCCAACTT TCCCTCACAGAAACGGCGCTGGACGTGGCAGCCCGCATGGGGGACGTGGA CAGCGTGAAGTTGCTGCTACGGTACGGAGCGGACGTCAACGCTGGCGACT GGGAGGGCCACACGGCCCTGCACAGGGCCGCTTTTCACAACAAGGCCGGC GTAATTGAAGCGCTTGTCGGGGCGGGAGCGGACGTGCATGCCCTGGGCCG GACGGACAAGCGAACGCCCCTGCACGTCGCTGCCGGGATCCGGGCCGTCA GCGCCGCGCGCGCACTCTTGCACCACGGCGCTAGCGCCAACGCGCTCGAC GTGTCGGGGCAGTCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig97377:94..708+

>mRNA_M-pyrifera_M_contig97377.22431.1 ID=mRNA_M-pyrifera_M_contig97377.22431.1|Name=mRNA_M-pyrifera_M_contig97377.22431.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1230bp|location=Sequence derived from alignment at M-pyrifera_M_contig97377:94..708+ (Macrocystis pyrifera P11B4 male)
AACGGATCTACAGCTCTGCACGACGCGGCCTTGAACAACAACGTCGACGC
GATCAGGGTGCTCGTGAAAGCTGGGGCGGATGTTAACGTGCAGGGGCCAT
TCGGGGTGGCGCCTCTGCACTTTGCTTCGCAGAAGAACTTTCCCGAGTCC
GTGGCAGCTCTGTGCGCGTTCGGAGCAGACAGGAACGCGACAAACTTGCT
CGGCAACACGCCACTCAAACACGCGGTCTTGAACGGGAGCTTGTGCGCGA
TGAAAGCTCTCCTAGACGCTGGCGGCGTGGATGTTAACCTTCGCCAACTT
TCCCTCACAGAAACGGCGCTGGACGTGGCAGCCCGCATGGGGGACGTGGA
CAGCGTGAAGTTGCTGCTACGGTACGGAGCGGACGTCAACGCTGGCGACT
GGGAGGGCCACACGGCCCTGCACAGGGCCGCTTTTCACAACAAGGCCGGC
GTAATTGAAGCGCTTGTCGGGGCGGGAGCGGACGTGCATGCCCTGGGCCG
GACGGACAAGCGAACGCCCCTGCACGTCGCTGCCGGGATCCGGGCCGTCA
GCGCCGCGCGCGCACTCTTGCACCACGGCGCTAGCGCCAACGCGCTCGAC
GTGTCGGGGCAGTCGAACGGATCTACAGCTCTGCACGACGCGGCCTTGAA
CAACAACGTCGACGCGATCAGGGTGCTCGTGAAAGCTGGGGCGGATGTTA
ACGTGCAGGGGCCATTCGGGGTGGCGCCTCTGCACTTTGCTTCGCAGAAG
AACTTTCCCGAGTCCGTGGCAGCTCTGTGCGCGTTCGGAGCAGACAGGAA
CGCGACAAACTTGCTCGGCAACACGCCACTCAAACACGCGGTCTTGAACG
GGAGCTTGTGCGCGATGAAAGCTCTCCTAGACGCTGGCGGCGTGGATGTT
AACCTTCGCCAACTTTCCCTCACAGAAACGGCGCTGGACGTGGCAGCCCG
CATGGGGGACGTGGACAGCGTGAAGTTGCTGCTACGGTACGGAGCGGACG
TCAACGCTGGCGACTGGGAGGGCCACACGGCCCTGCACAGGGCCGCTTTT
CACAACAAGGCCGGCGTAATTGAAGCGCTTGTCGGGGCGGGAGCGGACGT
GCATGCCCTGGGCCGGACGGACAAGCGAACGCCCCTGCACGTCGCTGCCG
GGATCCGGGCCGTCAGCGCCGCGCGCGCACTCTTGCACCACGGCGCTAGC
GCCAACGCGCTCGACGTGTCGGGGCAGTCG
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