mRNA_M-pyrifera_M_contig97358.22428.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97358.22428.1
Unique NamemRNA_M-pyrifera_M_contig97358.22428.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig97358.22428.1 vs. uniprot
Match: A0A0L0G002_9EUKA (Ribosome production factor 2 homolog n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G002_9EUKA)

HSP 1 Score: 114 bits (286), Expect = 1.500e-28
Identity = 52/109 (47.71%), Postives = 81/109 (74.31%), Query Frame = 1
Query:   13 RSKVGRMKRVMKAKEPKMVEDPKKILFLRGHRTNEELLHIMRDLSRIVAPRAVRLQKRNLILPFEDTSSLEFLCERNDCACFVLANHTKKRPDNLIFGRIFDGAVFDMM 339
            ++K  R KRVM  + PK++E+PK+ LF+RG++T E +  ++ DL  +  P AV  +K+N +LPF+D+SSLEF C ++D + FV  NHTKKRP+N++ GR+F+GA+ DM+
Sbjct:    6 KAKNARTKRVMDNRAPKVIENPKQTLFVRGNKTGEVVNELLGDLHTLKKPLAVMYKKKNPVLPFDDSSSLEFFCNKSDTSLFVFGNHTKKRPNNVVLGRMFNGAILDMV 114          
BLAST of mRNA_M-pyrifera_M_contig97358.22428.1 vs. uniprot
Match: A0A7S4DDE5_HETAK (Ribosome production factor 2 homolog (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDE5_HETAK)

HSP 1 Score: 107 bits (267), Expect = 2.200e-27
Identity = 49/104 (47.12%), Postives = 72/104 (69.23%), Query Frame = 1
Query:   28 RMKRVMKAKEPKMVEDPKKILFLRGHRTNEELLHIMRDLSRIVAPRAVRLQKRNLILPFEDTSSLEFLCERNDCACFVLANHTKKRPDNLIFGRIFDGAVFDMM 339
            R+KR +K +EPK+VE+ KK L +RG +T+E +   ++DL R+  P  +   + N + PFED + +EFLC +NDC+ F L +H KKRP NLI GR+FDG + DM+
Sbjct:   16 RVKRALKEREPKLVENTKKALIIRGKKTSEVINLSLKDLYRLKKPHGLMFARHNDVQPFEDETKIEFLCGKNDCSLFALGSHNKKRPHNLILGRLFDGHLLDMV 119          
BLAST of mRNA_M-pyrifera_M_contig97358.22428.1 vs. uniprot
Match: A0A6S7H242_PARCT (Ribosome production factor 2 homolog n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7H242_PARCT)

HSP 1 Score: 111 bits (277), Expect = 2.260e-27
Identity = 49/111 (44.14%), Postives = 81/111 (72.97%), Query Frame = 1
Query:    7 VKRSKVGRMKRVMKAKEPKMVEDPKKILFLRGHRTNEELLHIMRDLSRIVAPRAVRLQKRNLILPFEDTSSLEFLCERNDCACFVLANHTKKRPDNLIFGRIFDGAVFDMM 339
            +KR+K  + +R ++A+EPK+VE+ K  +F+RG RT+E++   ++DL  +  P +V  +++N++ PFED +SLEF  ++ND + FV  +H+KKRP NL+FGR FDG + DM+
Sbjct:   10 IKRAKTHKGRRFLEAREPKLVENTKTTMFIRGGRTSEKVTQALKDLCMLKKPHSVLFRRKNVLRPFEDETSLEFFSKKNDASTFVFGSHSKKRPHNLVFGRFFDGHILDMV 120          
BLAST of mRNA_M-pyrifera_M_contig97358.22428.1 vs. uniprot
Match: A0A067CU79_SAPPC (Ribosome production factor 2 homolog n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CU79_SAPPC)

HSP 1 Score: 110 bits (275), Expect = 6.210e-27
Identity = 55/113 (48.67%), Postives = 83/113 (73.45%), Query Frame = 1
Query:    4 PVKRSKV-GRMKRVMKAKEPKMVEDPKKILFLRGHRTNEELLHIMRDLSRIVAPRAVRLQKRNLILPFEDTSSLEFLCERNDCACFVLANHTKKRPDNLIFGRIFDGAVFDMM 339
            P+K  +V  ++ R +K K PK+VE+ K++L LRG++TNE++ +++RDL  I AP A  L KRN + PF+D +S+EFL  +ND + F+L + TKKRP+N+IFGR FDG + DM+
Sbjct:   32 PIKTKRVKAKVARAIKNKAPKLVENTKQLLVLRGNKTNEDVTNLLRDLRMIKAPDAKALSKRNELHPFDDANSVEFLTAKNDTSLFLLGSSTKKRPNNVIFGRTFDGHLMDMI 144          
BLAST of mRNA_M-pyrifera_M_contig97358.22428.1 vs. uniprot
Match: A0A7S1CB60_9STRA (Ribosome production factor 2 homolog (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CB60_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.100e-26
Identity = 52/104 (50.00%), Postives = 73/104 (70.19%), Query Frame = 1
Query:   25 GRMKRVMKAKEPKMVEDPKKILFLRGHRTNEELLHIMRDLSRIVAPRAVRLQKRNLILPFEDTSSLEFLCERNDCACFVLANHTKKRPDNLIFGRIFDGAVFDM 336
             R  R +KA+EPK+VE  K+ L LRG +T+E ++  ++D+  +  P A    +RN ILPFED+SSL+FLC++N+CA F L +H KKRP NL+ GR+FD  V DM
Sbjct:   13 ARAARAIKAREPKVVEGVKQALVLRGVKTSEVVIEALKDIYSLKKPAAKMFSRRNPILPFEDSSSLDFLCDKNECALFALGSHNKKRPHNLVLGRLFDRHVLDM 116          
BLAST of mRNA_M-pyrifera_M_contig97358.22428.1 vs. uniprot
Match: A0A485KVE8_9STRA (Ribosome production factor 2 homolog n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KVE8_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.400e-26
Identity = 52/101 (51.49%), Postives = 76/101 (75.25%), Query Frame = 1
Query:   37 RVMKAKEPKMVEDPKKILFLRGHRTNEELLHIMRDLSRIVAPRAVRLQKRNLILPFEDTSSLEFLCERNDCACFVLANHTKKRPDNLIFGRIFDGAVFDMM 339
            R +K KE K+VE+ K++L LRG++TNE++  ++RDL  I AP A  L K+N + PF+D +S+EFL ++ND + FVL + TKKRP+N+IFGR FDG + DM+
Sbjct:   46 RAVKNKEAKLVENTKQLLVLRGNKTNEDVNQLLRDLKMIKAPDAKVLSKKNELHPFDDPNSIEFLTQKNDTSLFVLGSSTKKRPNNMIFGRTFDGHIMDML 146          
BLAST of mRNA_M-pyrifera_M_contig97358.22428.1 vs. uniprot
Match: K8YU75_NANGC (Ribosome production factor 2 homolog n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YU75_NANGC)

HSP 1 Score: 109 bits (272), Expect = 2.770e-26
Identity = 52/105 (49.52%), Postives = 76/105 (72.38%), Query Frame = 1
Query:   25 GRMKRVMKAKEPKMVEDPKKILFLRGHRTNEELLHIMRDLSRIVAPRAVRLQKRNLILPFEDTSSLEFLCERNDCACFVLANHTKKRPDNLIFGRIFDGAVFDMM 339
             R+ R++KAKEPK+VED K+ LFL+G +  + L  ++RDL++++ P A  L ++N I PFED +SLEFL ++NDCA F   +H+KKRP NLI GR +D  + DM+
Sbjct:   48 ARVLRLLKAKEPKLVEDGKQALFLKGTKCPQLLQTVLRDLTKLLKPNAKFLSRKNEIRPFEDVTSLEFLADKNDCALFCFGSHSKKRPQNLIMGRTYDKHLLDMV 152          
BLAST of mRNA_M-pyrifera_M_contig97358.22428.1 vs. uniprot
Match: UPI001069B537 (ribosome production factor 2 homolog n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI001069B537)

HSP 1 Score: 108 bits (269), Expect = 3.470e-26
Identity = 50/111 (45.05%), Postives = 78/111 (70.27%), Query Frame = 1
Query:    7 VKRSKVGRMKRVMKAKEPKMVEDPKKILFLRGHRTNEELLHIMRDLSRIVAPRAVRLQKRNLILPFEDTSSLEFLCERNDCACFVLANHTKKRPDNLIFGRIFDGAVFDMM 339
            +KR+K  + +R++ AKEPK+VE+ K  +F+RG RT+E +   ++DL  +  P AV  +++N++ PFED +SLEF   +ND + FV  +H+KKRP NL+ GR FDG + DM+
Sbjct:   10 IKRAKTHKGRRLLDAKEPKLVENSKTTMFIRGGRTSETVTQALKDLYVLRKPHAVIFKRKNIMRPFEDETSLEFFSNKNDASTFVFGSHSKKRPHNLVIGRFFDGHILDMV 120          
BLAST of mRNA_M-pyrifera_M_contig97358.22428.1 vs. uniprot
Match: A0A2D4BFM4_PYTIN (Ribosome production factor 2 homolog n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BFM4_PYTIN)

HSP 1 Score: 108 bits (270), Expect = 3.640e-26
Identity = 48/101 (47.52%), Postives = 75/101 (74.26%), Query Frame = 1
Query:   37 RVMKAKEPKMVEDPKKILFLRGHRTNEELLHIMRDLSRIVAPRAVRLQKRNLILPFEDTSSLEFLCERNDCACFVLANHTKKRPDNLIFGRIFDGAVFDMM 339
            R +K +EPK+VE+ KK+L +RG++T+EE+  ++RDL  + AP    + K+N I PF+D + +EFL ++ND + F++ +HTKKRP+NL+ GR FDG + DMM
Sbjct:   49 RALKDREPKLVENTKKLLVMRGNKTSEEVTKLLRDLRMLKAPEVKMMSKKNDIHPFDDETKVEFLTQKNDTSLFMVGSHTKKRPNNLVLGRTFDGHILDMM 149          
BLAST of mRNA_M-pyrifera_M_contig97358.22428.1 vs. uniprot
Match: A0A6G0XKQ4_9STRA (Ribosome production factor 2 homolog n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XKQ4_9STRA)

HSP 1 Score: 108 bits (269), Expect = 3.980e-26
Identity = 51/101 (50.50%), Postives = 76/101 (75.25%), Query Frame = 1
Query:   37 RVMKAKEPKMVEDPKKILFLRGHRTNEELLHIMRDLSRIVAPRAVRLQKRNLILPFEDTSSLEFLCERNDCACFVLANHTKKRPDNLIFGRIFDGAVFDMM 339
            R +K KE K+VE+ K++L LRG++TNE++  ++RD+  I AP A  L K+N + PF+D +S+EFL ++ND + F+L + TKKRP+NLIFGR FDG + DM+
Sbjct:   34 RALKNKEAKLVENTKQLLVLRGNKTNEDVNQLLRDIKMIKAPDAKVLSKKNELHPFDDPNSIEFLTQKNDTSLFLLGSSTKKRPNNLIFGRTFDGHIMDML 134          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97358.22428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0L0G002_9EUKA1.500e-2847.71Ribosome production factor 2 homolog n=1 Tax=Sphae... [more]
A0A7S4DDE5_HETAK2.200e-2747.12Ribosome production factor 2 homolog (Fragment) n=... [more]
A0A6S7H242_PARCT2.260e-2744.14Ribosome production factor 2 homolog n=1 Tax=Param... [more]
A0A067CU79_SAPPC6.210e-2748.67Ribosome production factor 2 homolog n=3 Tax=Sapro... [more]
A0A7S1CB60_9STRA1.100e-2650.00Ribosome production factor 2 homolog (Fragment) n=... [more]
A0A485KVE8_9STRA2.400e-2651.49Ribosome production factor 2 homolog n=1 Tax=Aphan... [more]
K8YU75_NANGC2.770e-2649.52Ribosome production factor 2 homolog n=3 Tax=Monod... [more]
UPI001069B5373.470e-2645.05ribosome production factor 2 homolog n=1 Tax=Dendr... [more]
A0A2D4BFM4_PYTIN3.640e-2647.52Ribosome production factor 2 homolog n=1 Tax=Pythi... [more]
A0A6G0XKQ4_9STRA3.980e-2650.50Ribosome production factor 2 homolog n=1 Tax=Aphan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97358contigM-pyrifera_M_contig97358:278..709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score115.5
Seed ortholog evalue1.6e-23
Seed eggNOG ortholog72019.SARC_05566T0
Preferred nameRPF2
KEGG koko:K14847
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008097,GO:0008150,GO:0008152,GO:0008312,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902626,GO:1990904
EggNOG free text desc.ribosome production factor 2 homolog
EggNOG OGs39R5N@33154,COG5106@1,KOG3031@2759
COG Functional cat.J
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons2
Model size339
Cds size339
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816890.4884896-CDS-M-pyrifera_M_contig97358:277..4211622816890.4884896-CDS-M-pyrifera_M_contig97358:277..421Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97358 278..421 +
1692278239.032463-CDS-M-pyrifera_M_contig97358:277..4211692278239.032463-CDS-M-pyrifera_M_contig97358:277..421Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97358 278..421 +
1622816890.5028028-CDS-M-pyrifera_M_contig97358:514..7091622816890.5028028-CDS-M-pyrifera_M_contig97358:514..709Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97358 515..709 +
1692278239.0437884-CDS-M-pyrifera_M_contig97358:514..7091692278239.0437884-CDS-M-pyrifera_M_contig97358:514..709Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97358 515..709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97358.22428.1prot_M-pyrifera_M_contig97358.22428.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97358 278..709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97358.22428.1

>prot_M-pyrifera_M_contig97358.22428.1 ID=prot_M-pyrifera_M_contig97358.22428.1|Name=mRNA_M-pyrifera_M_contig97358.22428.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
MPVKRSKVGRMKRVMKAKEPKMVEDPKKILFLRGHRTNEELLHIMRDLSR
IVAPRAVRLQKRNLILPFEDTSSLEFLCERNDCACFVLANHTKKRPDNLI
FGRIFDGAVFDMM
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mRNA from alignment at M-pyrifera_M_contig97358:278..709+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97358.22428.1 ID=mRNA_M-pyrifera_M_contig97358.22428.1|Name=mRNA_M-pyrifera_M_contig97358.22428.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig97358:278..709+ (Macrocystis pyrifera P11B4 male)
ATGCCGGTCAAACGAAGCAAGGTGGGCCGCATGAAGCGGGTGATGAAGGC GAAAGAACCCAAGATGGTGGAGGACCCGAAGAAAATTTTGTTTCTGCGTG GCCATCGGACGAATGAGGAGCTTTTGCACATCATGCGAGACCTGGTACGG TAGGGCTTTGAGGTGTTTGTTTTGGTGGGCTGGTTTGCATTGTGAAAGGG GAGTGGGATGGTTGCGAAATGGGTGTTTTTTCTGCAGAGCCGTATCGTAG CACCCCGGGCAGTGCGTTTGCAGAAGCGCAACCTGATCCTGCCATTCGAA GACACTTCGTCGCTGGAGTTTCTGTGCGAGCGGAACGACTGCGCTTGCTT CGTGCTCGCGAACCACACGAAGAAGCGGCCCGACAACCTGATTTTCGGGA GGATCTTCGATGGCGCCGTGTTCGACATGATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig97358:278..709+

>mRNA_M-pyrifera_M_contig97358.22428.1 ID=mRNA_M-pyrifera_M_contig97358.22428.1|Name=mRNA_M-pyrifera_M_contig97358.22428.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig97358:278..709+ (Macrocystis pyrifera P11B4 male)
ATGCCGGTCAAACGAAGCAAGGTGGGCCGCATGAAGCGGGTGATGAAGGC
GAAAGAACCCAAGATGGTGGAGGACCCGAAGAAAATTTTGTTTCTGCGTG
GCCATCGGACGAATGAGGAGCTTTTGCACATCATGCGAGACCTGATGCCG
GTCAAACGAAGCAAGGTGGGCCGCATGAAGCGGGTGATGAAGGCGAAAGA
ACCCAAGATGGTGGAGGACCCGAAGAAAATTTTGTTTCTGCGTGGCCATC
GGACGAATGAGGAGCTTTTGCACATCATGCGAGACCTGAGCCGTATCGTA
GCACCCCGGGCAGTGCGTTTGCAGAAGCGCAACCTGATCCTGCCATTCGA
AGACACTTCGTCGCTGGAGTTTCTGTGCGAGCGGAACGACTGCGCTTGCT
TCGTGCTCGCGAACCACACGAAGAAGCGGCCCGACAACCTGATTTTCGGG
AGGATCTTCGATGGCGCCGTGTTCGACATGATGAGCCGTATCGTAGCACC
CCGGGCAGTGCGTTTGCAGAAGCGCAACCTGATCCTGCCATTCGAAGACA
CTTCGTCGCTGGAGTTTCTGTGCGAGCGGAACGACTGCGCTTGCTTCGTG
CTCGCGAACCACACGAAGAAGCGGCCCGACAACCTGATTTTCGGGAGGAT
CTTCGATGGCGCCGTGTTCGACATGATG
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