mRNA_M-pyrifera_M_contig9733.22418.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9733.22418.1
Unique NamemRNA_M-pyrifera_M_contig9733.22418.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig9733.22418.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI)

HSP 1 Score: 323 bits (828), Expect = 1.610e-108
Identity = 171/258 (66.28%), Postives = 193/258 (74.81%), Query Frame = 1
Query:    1 MEELLNTPMELGRNPDDYFNQKHLLRHKAEKMEEIISDRYFKDICVTGFTDEYKDVKIIMYRDLNFNVDQMQTTMRHMFLHEQSRKGPKGGIAGKGFAMAT--STPTTCFECGESEHNRRNCPQRRGEGRKQKPKPAGASKWCSIHFTTKHSDEACYEQGAKRPEKSG-DTGKAFTAXXXXXXXXXXXXKKDSATAKEASNTKAAIDFNADGDESDEGFMYATVPSGKKAEANSLEATLPVDTGATETMLDDRLIPGL 765
            ME+L NT ME G+NPDDYFN KHLLRHK EKM E ISDRYFKD+CVTGFT EYK+VK+IM+RD NFNV+ MQTTM HM L EQSRKG KGGIAG+GF M T  S   TCF CGE  H RRNC QRRG+GR++K KPAGA+KWC  HFTTK+SDE CY QGAKRP      T KAF+A            +K+  TAKEAS+TKAAID + DGDESDEGFMYAT  +G + EAN+   TL V+ GATETM DDRLIP L
Sbjct:    1 MEKLDNTSMEPGQNPDDYFNHKHLLRHKVEKMGEKISDRYFKDMCVTGFTHEYKNVKMIMHRDPNFNVNHMQTTMHHMALDEQSRKGSKGGIAGRGFPMVTTASEQETCFGCGEKGHIRRNCLQRRGKGRQRKTKPAGATKWCCFHFTTKNSDEECYGQGAKRPITDQISTDKAFSACAHCAHFSSTSDRKELTTAKEASSTKAAIDSSTDGDESDEGFMYATTRTGMEVEANAEGVTLLVEIGATETMRDDRLIPHL 258          
BLAST of mRNA_M-pyrifera_M_contig9733.22418.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE)

HSP 1 Score: 303 bits (775), Expect = 3.740e-94
Identity = 169/300 (56.33%), Postives = 200/300 (66.67%), Query Frame = 1
Query:    1 MEELLNTPMELGRNPDDYFNQKHLLRHKAEKMEEIISDRYFKDICVTGFTDEYKDVKIIMYRDLNFNVDQMQTTMRHMFLHEQSRKGPKGGIAGKGFAMA--TSTPTTCFECGESEHNRRNCPQRRGEGRKQKPKPAGASKWCSIHFTTKHSDEACYEQGAKRPEKSGDTGKAFTAXXXXXXXXXXXXKKDSA-TAKEASNTKAAIDFNADGDESDEGFMYATVPSGKKAEANSLEAT------------------------------------------LPVDTGATETMLDDRLIPGL 765
            MEEL+NTPME  +NPDDYFNQKHLLRHKAEKM E ISD YF D CVTGFT+EYKDVK+IMYRD +FNVD+MQTTMRHMFL EQSR GPKG IAG+GFAM   TS   TCF+CGE  H  RNC ++RG+G+K K KPAGA+KWCS+HFTT+HSDE C+EQGA RP+KS +TGKA +A            K + A T +EAS+T+A IDF+A+G ES+EGFMYA V  G+  +  +  AT                                          L +DTGA+E MLDD LIPGL
Sbjct:  116 MEELINTPMEPRQNPDDYFNQKHLLRHKAEKMGETISDCYFNDECVTGFTNEYKDVKMIMYRDPDFNVDKMQTTMRHMFLDEQSRNGPKGSIAGRGFAMTATTSEEPTCFDCGEKGHIWRNCSEKRGKGKK-KTKPAGAAKWCSVHFTTRHSDEECFEQGATRPKKSSNTGKALSACASCTHCFSTSNKTELAMTKQEASSTQAEIDFSAEG-ESEEGFMYAIVHKGEDLKPMATGATPLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLIDTGASENMLDDCLIPGL 413          
BLAST of mRNA_M-pyrifera_M_contig9733.22418.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE)

HSP 1 Score: 255 bits (651), Expect = 6.650e-77
Identity = 142/256 (55.47%), Postives = 170/256 (66.41%), Query Frame = 1
Query:    1 MEELLNTPMELGRNPDDYFNQKHLLRHKAEKMEEIISDRYFKDICVTGFTDEYKDVKIIMYRDLNFNVDQMQTTMRHMFLHEQSRKGPKGGIAGKGFAMATS-TPTTCFECGESEHNRRNCPQRRGEGRKQKPKPAGASKWCSIHFTTKHSDEACYEQGAKRPEKSGDTGKAFTAXXXXXXXXXXXXKKDSATAKEASNTKAAIDFNADGDESDEGFMYATVP--SGKKAEANSLEATLPVDTGATETMLDDRLIP 759
            MEEL N PM  G NPDDYFNQKHLLR + +KM E ISDR FKDICV GF+DEYKDVK++++RD  FNV  M +TMR++FL EQSRKG KG IAG+GFAMAT+ +   C  C E  H RRNCP+ +   +K K KPAGA+KWCS H TT HSDE CY+QG KRPE + D+ K FTA            K DS      +N  A +DF  D D  D GFM+AT    SG+   A+S    L VD+ A+ETM D+RLIP
Sbjct:  156 MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMLSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKK-KTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSNKVFTACSNCTHCSSASKKDDS------NNEVAVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVRLVVDSEASETMFDNRLIP 404          
BLAST of mRNA_M-pyrifera_M_contig9733.22418.1 vs. uniprot
Match: A0A6H5JKH7_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH7_9PHAE)

HSP 1 Score: 252 bits (644), Expect = 4.440e-75
Identity = 150/257 (58.37%), Postives = 179/257 (69.65%), Query Frame = 1
Query:    1 MEELLNTPMELGRNPDDYFNQKHLLRHKAEKMEEIISDRYFKDICVTGFTDEYKDVKIIMYRDLNFNVDQMQTTMRHMFLHEQSRKGPKGGIAGKGFAMATS-TPTTCFECGESEHNRRNCPQRRGEGRKQKPKPAGASKWCSIHFTTKHSDEACYEQGAKRPEKSGDTGKAFTAXXXXXXXXXXXXKKDSATAKEASNTKAAIDFNADGDESDEGFMYATVP--SGKKAEANSLEATLPVDTGATETMLDDRLIPG 762
            MEEL N PM  G NPDDYFNQKHLLR + +KM E ISDR FKDICV GF+DEYKDVK++++RD  F+V  MQ+TMR++FL EQSRKG KG IAG+GFAMAT+ +   C+E G   H RRNCP+ +   +K K KPAGA+KWCS H TT HSDE CY+QG KRPE + D+ KAFTA     XXXXXXXK DS      +N  A +DF  D D  D GFM+AT    S +   A S    L VDTG +ET+LD+RLI G
Sbjct:    1 MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFSVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICYEPG---HIRRNCPKIKNRAKK-KTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSDCTXXXXXXXKNDS------NNEVAVVDFTRDEDAFDSGFMFATCSRISKRNLAATSTGVGLLVDTGVSETILDNRLIAG 247          
BLAST of mRNA_M-pyrifera_M_contig9733.22418.1 vs. uniprot
Match: A0A6H5KN28_9PHAE (Uncharacterized protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN28_9PHAE)

HSP 1 Score: 245 bits (625), Expect = 1.140e-73
Identity = 143/264 (54.17%), Postives = 178/264 (67.42%), Query Frame = 1
Query:    1 MEELLNTPMELGRNPDDYFNQKHLLRHKAEKMEEIISDRYFKDICVTGFTDEYKDVKIIMYRDLNFNVDQMQTTMRHMFLHEQSRKGPKGGIAGKGFAMATSTP-TTCFECGESEHNRRNCPQRRGEG-RKQKPKPAGASKWCSIHFTTKHSDEACYEQGAKRPEKSGDTGKAFTAXXXXXXXXXXXXKKDSA-----TAKEASNT-KAAIDFNADGDESDEGFMYATV---PSGKKAEANSLEATLPVDTGATETMLDDRLIP 759
            +++L  T ME G NPDD+FN+KH LR + EKM E ISDR FKDICV GF+++YKD+K++++RD +F+V QMQ TMR++FL EQ RK  KG IAG+GFAMAT T    CFEC E  H RRNCP R+ EG R +K KPAGA+KWCS+H TT HSDE CY QGAKRPE+   TGKAF+A   XXXXX       +      T KE   T KA +DF+ D D    GFMY  +    SG+     +   +  VD+GA+ETM D+RLIP
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPER---TGKAFSACTHXXXXXTQSRDTHAKPTKRETPKETEKTEKAEVDFSYDEDTFKGGFMYHAICSKGSGRTFTTTATGTSALVDSGASETMFDNRLIP 396          
BLAST of mRNA_M-pyrifera_M_contig9733.22418.1 vs. uniprot
Match: A0A6H5KJB9_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB9_9PHAE)

HSP 1 Score: 244 bits (624), Expect = 1.240e-72
Identity = 135/261 (51.72%), Postives = 169/261 (64.75%), Query Frame = 1
Query:    1 MEELLNTPMELGRNPDDYFNQKHLLRHKAEKMEEIISDRYFKDICVTGFTDEYKDVKIIMYRDLNFNVDQMQTTMRHMFLHEQSRKGPKGGIAGKGFAMATSTP-TTCFECGESEHNRRNCPQRRGEG-RKQKPKPAGASKWCSIHFTTKHSDEACYEQGAKRPEKSGDTGKAFTAXXXXXXXXXXXXKKDSAT---AKEASNTKAAIDFNADGDESDEGFMY---ATVPSGKKAEANSLEATLPVDTGATETMLDDRLIP 759
            +++L  T ME G NPDD+FN+KH LR + EKM E ISDR FKDICV GF+++YKD+K++++RD +F+V QMQ TMR++FL EQ RK  KG IAG+GFAMAT T    CFEC E  H RRNCP R+ EG R +K KPAGA+KWCS+H TT HSDE CY QGAKRPE++G    A T              K + T    +     KA IDF+ D D    GFMY    +  SG+     +   +  VD+GA+ETM DDRLIP
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDTHAKPTTTETPTETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIP 396          
BLAST of mRNA_M-pyrifera_M_contig9733.22418.1 vs. uniprot
Match: A0A6H5JZ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ53_9PHAE)

HSP 1 Score: 239 bits (611), Expect = 1.300e-72
Identity = 137/258 (53.10%), Postives = 167/258 (64.73%), Query Frame = 1
Query:    1 MEELLNTPMELGRNPDDYFNQKHLLRHKAEKMEEIISDRYFKDICVTGFTDEYKDVKIIMYRDLNFNVDQMQTTMRHMFLHEQSRKGPKGGIAGKGFAMATS-TPTTCFECGESEHNRRNCPQRRGEGRKQKPKPAGASKWCSIHFTTKHSDEACYEQ--GAKRPEKSGDTGKAFTAXXXXXXXXXXXXKKDSATAKEASNTKAAIDFNADGDESDEGFMYATVP--SGKKAEANSLEATLPVDTGATETMLDDRLIP 759
            MEEL N PM  G NPDDYFNQKH L  + +KM E ISDR FKDICV GF+DEY+DVK++++RD  FNV  MQ+TMR+++L EQSRKG KG IAG+GFAMAT+ +   C  C E  H RRNCP+ +   +K K KPAGA+KWCS H TT HSDE CY+Q  G K PE + D+ KAFT             K DS      +N    +DF  D D  D GFM+AT    SG+   A+S    L VDTGA+ TM D+RL+P
Sbjct:    1 MEELENNPMNPGENPDDYFNQKHPLCVQLDKMGEPISDRRFKDICVQGFSDEYEDVKLMLFRDPTFNVLDMQSTMRNIYLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKK-KTKPAGATKWCSKHNTTSHSDEECYQQXQGGKCPEDTKDSSKAFTPCSDCTHCSSTCNKHDS------NNEVTVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVGLLVDTGASATMFDNRLMP 251          
BLAST of mRNA_M-pyrifera_M_contig9733.22418.1 vs. uniprot
Match: A0A6H5JF66_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF66_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 2.520e-72
Identity = 132/221 (59.73%), Postives = 157/221 (71.04%), Query Frame = 1
Query:    1 MEELLNTPMELGRNPDDYFNQKHLLRHKAEKMEEIISDRYFKDICVTGFTDEYKDVKIIMYRDLNFNVDQMQTTMRHMFLHEQSRKGPKGGIAGKGFAMATS-TPTTCFECGESEHNRRNCPQRRGEGRKQKPKPAGASKWCSIHFTTKHSDEACYEQGAKRPEKSGDTGKAFTAXXXXXXXXXXXXKKDSATAKEASNTKAAIDFNADGDESDEGFMYAT 660
            MEEL N PM  G NPD+YFNQKHLLR + +KM E ISDR FKDICV GF+DEYKDVK++++RD  FNV  MQ+TMR++FL EQSRKG KG IAG+GFAMAT+ +   C  C E  H RRNCP+ +   +K K KPAGA+KWCS H TT HSDE CY+QG KRPE + D+ KAFTA     XXXXXX K DS      ++  A +DF  D D  D GFM+AT
Sbjct:  138 MEELENNPMNPGENPDNYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKK-KTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSNCTXXXXXXNKHDS------NDEVAVVDFTRDEDAFDSGFMFAT 351          
BLAST of mRNA_M-pyrifera_M_contig9733.22418.1 vs. uniprot
Match: A0A6H5KXR7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR7_9PHAE)

HSP 1 Score: 234 bits (598), Expect = 2.730e-72
Identity = 135/257 (52.53%), Postives = 166/257 (64.59%), Query Frame = 1
Query:    1 MEELLNTPMELGRNPDDYFNQKHLLRHKAEKMEEIISDRYFKDICVTGFTDEYKDVKIIMYRDLNFNVDQMQTTMRHM-FLHEQSRKGPKGGIAGKGFAMATS-TPTTCFECGESEHNRRNCPQRRGEGRKQKPKPAGASKWCSIHFTTKHSDEACYEQGAKRPEKSGDTGKAFTAXXXXXXXXXXXXKKDSATAKEASNTKAAIDFNADGDESDEGFMYATVP--SGKKAEANSLEATLPVDTGATETMLDDRLIP 759
            MEEL N PM  G NPDDYFNQKHL+R + +KM E ISDR  KDI V GF+DEY+DVK++++RD  FN   MQ+T+R+  + +EQSRKG KG IAG+GFAMAT+ +   C  C E  H RRNCP+ +   +K K KPAGA+KWC  H TT HSDE CY+QG KRPE + D+ KAFTA            K DS      +N  A  DF  D D  D GFM+ T    S +   A+S  + L VDTGA+ETM D+RLIP
Sbjct:   96 MEELENNPMNPGENPDDYFNQKHLIRAQLDKMGEPISDRRCKDIWVQGFSDEYRDVKLMVFRDPTFNALGMQSTIRNTSWTNEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKK-KTKPAGATKWCCKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSDCTHCSSAPNKNDS------NNEVAVADFTRDEDAFDSGFMFGTCSRISERNFAASSTGSILLVDTGASETMFDNRLIP 345          
BLAST of mRNA_M-pyrifera_M_contig9733.22418.1 vs. uniprot
Match: A0A6H5K3T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T5_9PHAE)

HSP 1 Score: 245 bits (625), Expect = 4.560e-71
Identity = 137/261 (52.49%), Postives = 171/261 (65.52%), Query Frame = 1
Query:    1 MEELLNTPMELGRNPDDYFNQKHLLRHKAEKMEEIISDRYFKDICVTGFTDEYKDVKIIMYRDLNFNVDQMQTTMRHMFLHEQSRKGPKGGIAGKGFAMATSTP-TTCFECGESEHNRRNCPQRRGEG-RKQKPKPAGASKWCSIHFTTKHSDEACYEQGAKRPEKSGDTGKAFTAXXXXXXXXXXXXKKDSATA--KEASNTKAA-IDFNADGDESDEGFMY---ATVPSGKKAEANSLEATLPVDTGATETMLDDRLIP 759
            +++L  T ME G NPDD+FN+KH LR + EKM E ISDR FKDICV GF+++YKD+K++++RD +F+V QMQ TMR++FL EQ RK  KG IAG+GFAMAT T    CFEC E  H RRNCP R+ EG R +K KPAGA+KWCS+H TT HSDE CY QGAKRPE++G    A T              K + T   KE   T+ A IDF+ D D    GFMY    +  SG+     +   +  VD+GA+ETM DDRLIP
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEQAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIP 396          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9733.22418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6Q1_ECTSI1.610e-10866.28CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KW66_9PHAE3.740e-9456.33CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L580_9PHAE6.650e-7755.47CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JKH7_9PHAE4.440e-7558.37gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A6H5KN28_9PHAE1.140e-7354.17Uncharacterized protein (Fragment) n=3 Tax=Ectocar... [more]
A0A6H5KJB9_9PHAE1.240e-7251.72Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5JZ53_9PHAE1.300e-7253.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF66_9PHAE2.520e-7259.73CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KXR7_9PHAE2.730e-7252.53CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K3T5_9PHAE4.560e-7152.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9733contigM-pyrifera_M_contig9733:33..797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size765
Cds size765
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816890.1005838-CDS-M-pyrifera_M_contig9733:32..7971622816890.1005838-CDS-M-pyrifera_M_contig9733:32..797Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9733 33..797 -
1692278238.8340855-CDS-M-pyrifera_M_contig9733:32..7971692278238.8340855-CDS-M-pyrifera_M_contig9733:32..797Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9733 33..797 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9733.22418.1prot_M-pyrifera_M_contig9733.22418.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9733 33..797 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9733.22418.1

>prot_M-pyrifera_M_contig9733.22418.1 ID=prot_M-pyrifera_M_contig9733.22418.1|Name=mRNA_M-pyrifera_M_contig9733.22418.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=255bp
MEELLNTPMELGRNPDDYFNQKHLLRHKAEKMEEIISDRYFKDICVTGFT
DEYKDVKIIMYRDLNFNVDQMQTTMRHMFLHEQSRKGPKGGIAGKGFAMA
TSTPTTCFECGESEHNRRNCPQRRGEGRKQKPKPAGASKWCSIHFTTKHS
DEACYEQGAKRPEKSGDTGKAFTACTHCTHCSSVSDKKDSATAKEASNTK
AAIDFNADGDESDEGFMYATVPSGKKAEANSLEATLPVDTGATETMLDDR
LIPGL
back to top

mRNA from alignment at M-pyrifera_M_contig9733:33..797-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9733.22418.1 ID=mRNA_M-pyrifera_M_contig9733.22418.1|Name=mRNA_M-pyrifera_M_contig9733.22418.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=765bp|location=Sequence derived from alignment at M-pyrifera_M_contig9733:33..797- (Macrocystis pyrifera P11B4 male)
ATGGAGGAGCTGCTCAACACGCCCATGGAACTAGGACGGAATCCGGACGA CTACTTCAATCAGAAGCACCTCCTTCGACACAAGGCGGAGAAGATGGAAG AGATCATCTCGGACCGCTACTTCAAGGACATATGCGTCACCGGGTTCACC GACGAGTACAAGGACGTGAAGATAATCATGTACCGCGATCTGAACTTTAA CGTCGACCAGATGCAAACAACCATGAGGCACATGTTCCTGCACGAACAAT CTCGTAAGGGGCCAAAGGGTGGCATTGCAGGCAAGGGATTCGCCATGGCC ACCAGCACACCAACAACCTGCTTCGAATGTGGCGAGAGCGAACACAACCG CAGGAACTGCCCCCAAAGGAGAGGGGAGGGGAGAAAGCAGAAGCCCAAAC CAGCAGGAGCCTCCAAGTGGTGTTCGATCCACTTCACGACCAAACACTCC GACGAAGCATGCTATGAGCAAGGAGCGAAGCGGCCGGAGAAATCCGGCGA CACGGGCAAGGCCTTCACGGCGTGCACGCACTGCACGCACTGCTCTTCAG TCAGCGACAAGAAAGATTCGGCCACGGCGAAGGAGGCGAGCAACACAAAA GCCGCGATCGACTTCAACGCGGATGGCGACGAGTCAGATGAAGGGTTCAT GTACGCCACCGTTCCTAGCGGAAAGAAAGCCGAAGCCAACTCCTTGGAAG CCACCCTACCCGTGGACACCGGCGCGACAGAGACAATGCTCGACGACCGT CTCATTCCAGGGCTA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig9733:33..797-

>mRNA_M-pyrifera_M_contig9733.22418.1 ID=mRNA_M-pyrifera_M_contig9733.22418.1|Name=mRNA_M-pyrifera_M_contig9733.22418.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1530bp|location=Sequence derived from alignment at M-pyrifera_M_contig9733:33..797- (Macrocystis pyrifera P11B4 male)
ATGGAGGAGCTGCTCAACACGCCCATGGAACTAGGACGGAATCCGGACGA
CTACTTCAATCAGAAGCACCTCCTTCGACACAAGGCGGAGAAGATGGAAG
AGATCATCTCGGACCGCTACTTCAAGGACATATGCGTCACCGGGTTCACC
GACGAGTACAAGGACGTGAAGATAATCATGTACCGCGATCTGAACTTTAA
CGTCGACCAGATGCAAACAACCATGAGGCACATGTTCCTGCACGAACAAT
CTCGTAAGGGGCCAAAGGGTGGCATTGCAGGCAAGGGATTCGCCATGGCC
ACCAGCACACCAACAACCTGCTTCGAATGTGGCGAGAGCGAACACAACCG
CAGGAACTGCCCCCAAAGGAGAGGGGAGGGGAGAAAGCAGAAGCCCAAAC
CAGCAGGAGCCTCCAAGTGGTGTTCGATCCACTTCACGACCAAACACTCC
GACGAAGCATGCTATGAGCAAGGAGCGAAGCGGCCGGAGAAATCCGGCGA
CACGGGCAAGGCCTTCACGGCGTGCACGCACTGCACGCACTGCTCTTCAG
TCAGCGACAAGAAAGATTCGGCCACGGCGAAGGAGGCGAGCAACACAAAA
GCCGCGATCGACTTCAACGCGGATGGCGACGAGTCAGATGAAGGGTTCAT
GTACGCCACCGTTCCTAGCGGAAAGAAAGCCGAAGCCAACTCCTTGGAAG
CCACCCTACCCGTGGACACCGGCGCGACAGAGACAATGCTCGACGACCGT
CTCATTCCAGGGCTAATGGAGGAGCTGCTCAACACGCCCATGGAACTAGG
ACGGAATCCGGACGACTACTTCAATCAGAAGCACCTCCTTCGACACAAGG
CGGAGAAGATGGAAGAGATCATCTCGGACCGCTACTTCAAGGACATATGC
GTCACCGGGTTCACCGACGAGTACAAGGACGTGAAGATAATCATGTACCG
CGATCTGAACTTTAACGTCGACCAGATGCAAACAACCATGAGGCACATGT
TCCTGCACGAACAATCTCGTAAGGGGCCAAAGGGTGGCATTGCAGGCAAG
GGATTCGCCATGGCCACCAGCACACCAACAACCTGCTTCGAATGTGGCGA
GAGCGAACACAACCGCAGGAACTGCCCCCAAAGGAGAGGGGAGGGGAGAA
AGCAGAAGCCCAAACCAGCAGGAGCCTCCAAGTGGTGTTCGATCCACTTC
ACGACCAAACACTCCGACGAAGCATGCTATGAGCAAGGAGCGAAGCGGCC
GGAGAAATCCGGCGACACGGGCAAGGCCTTCACGGCGTGCACGCACTGCA
CGCACTGCTCTTCAGTCAGCGACAAGAAAGATTCGGCCACGGCGAAGGAG
GCGAGCAACACAAAAGCCGCGATCGACTTCAACGCGGATGGCGACGAGTC
AGATGAAGGGTTCATGTACGCCACCGTTCCTAGCGGAAAGAAAGCCGAAG
CCAACTCCTTGGAAGCCACCCTACCCGTGGACACCGGCGCGACAGAGACA
ATGCTCGACGACCGTCTCATTCCAGGGCTA
back to top