mRNA_M-pyrifera_M_contig97329.22417.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97329.22417.1
Unique NamemRNA_M-pyrifera_M_contig97329.22417.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig97329.22417.1 vs. uniprot
Match: A0A7C8CWL4_9BACT (PMT_2 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C8CWL4_9BACT)

HSP 1 Score: 157 bits (398), Expect = 3.190e-41
Identity = 102/232 (43.97%), Postives = 137/232 (59.05%), Query Frame = 1
Query:   10 FMLLATWPAARYVATEKRSALVLACLAAALSFGCHQAGGAALLIPAVAWALVFVRSRAELAAKAGRLVLDGVLAVAAFVALGVGVGHPYLLVHGRTATDAVVMGEELEQATGAISLGGQGFQPTFRLESFEHLFAAMLSYDPVLVVMGLLGFFVCWRRRCIWPALVFILAWGGLFLFSANDHVRYILPLVGLLCLPAGALVERLHRRFGAPPVLQGLLGVVLLVPLVQAMRF 705
            F+  A W +  +V +     L L  +AA L+F  HQAG  AL +  +AW +  +  R   A  A   V  GVL V  F  + V +GHPY LVHG TA+ AVV G    +A GA ++GG    PT RL+SF  LF A++ YDP+L+ MGL G  + +  R + P L++IL  G LFL + +DHVRY+LP + LL LPAG L ERL  R    P+   LL ++LL+PLVQ +RF
Sbjct:  177 FIAFAAWGSIAHVRSGSLRPLFLCGVAAGLAFATHQAGLMALGLAGLAWLMGPLHWRGSRALGARLKV--GVLCVVLFALVAVIIGHPYWLVHGPTASQAVVGGAAQNEALGAWTIGGMTLVPTLRLQSFAPLFRALVGYDPLLLFMGLAGLPLAFACRALGPVLLWILLTGALFLTAQSDHVRYLLPTLVLLALPAGFLGERLSAR----PLGVLLLALLLLLPLVQGLRF 402          
BLAST of mRNA_M-pyrifera_M_contig97329.22417.1 vs. uniprot
Match: A0A2E5X591_9BACT (PMT_2 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E5X591_9BACT)

HSP 1 Score: 152 bits (385), Expect = 2.820e-39
Identity = 103/250 (41.20%), Postives = 139/250 (55.60%), Query Frame = 1
Query:    1 MVLFMLLATWPAARYVATEKRSALVLACLAAALSFGCHQAGGAALLIPAVAWALVFVRSRAE--------LAAKAGRLVLDGVLAVAAFVALGVGVGHPYLLVHGRTATDAVVMGEELEQATGAISLGGQGFQPTFRLESFEHLFAAMLSYDPVLVVMGLLGFFVCWRRRCIWPALVFILAWGGLFLFSANDHVRYILPLVGLLCLPAGALVERLHRRF---GAPPVLQG---LLGVVLLVPLVQAMRFA 708
            +VL   LA W A  Y+   +  +L+   LAA L+F CHQAG   L + A AW L       +        L   + R +L G+ AVAAF   G  +GHPYLLVHG T  ++VV G     A G +S+GG       R E+F  L  A   YDPVL+++GL+G  + WRR  + P ++F + WGG FL +++DH+RY+LPLV  L L  G  +E L  R    GA P+  G   LL  +L +PLVQA+RFA
Sbjct:  169 LVLATALACWAAISYLEGGRSRSLLACGLAAGLAFACHQAGLGILALAAFAWLLGPAERPGQGSTSGPWPLVLLSPRRILLGLAAVAAFALAGFILGHPYLLVHGATPAESVVGGAAAGDA-GGLSVGGMSLIFDLRAETFTRLTRAFFGYDPVLLILGLVGLPLAWRRPSLRPLILFAVLWGGFFLTNSSDHLRYLLPLVPPLALCGGVALESLVSRGRVDGALPLGPGRLCLLVPLLALPLVQAVRFA 417          
BLAST of mRNA_M-pyrifera_M_contig97329.22417.1 vs. uniprot
Match: A0A2D5XNC6_9BACT (Uncharacterized protein n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5XNC6_9BACT)

HSP 1 Score: 146 bits (369), Expect = 4.180e-37
Identity = 94/231 (40.69%), Postives = 134/231 (58.01%), Query Frame = 1
Query:   10 FMLLATWPAARYVATEKRSALVLACLAAALSFGCHQAGGAALLIPAVAWALVFVRSRAELAAKAGRLVLDGVLAVAAFVALGVGVGHPYLLVHGRTATDAVVMGEELEQATGAISLGGQGFQPTFRLESFEHLFAAMLSYDPVLVVMGLLGFFVCWRRRCIWPALVFILAWGGLFLFSANDHVRYILPLVGLLCLPAGALVERLHRRFGAPPVLQGLLGVVLLVPLVQAMR 702
            F+ L+ WPAA +  T     L+L+ LAAAL+F  HQAG  A+LIPA+AWA      R    A+    +  G L    FV L + VGHPYL+ +G T T+AV  GE+L   +  +S+GGQ        ++F+ L  A++ YDP+L+++ LLGF    ++R   PA+ F L WG  F+ + NDHVRY++PL   L  PAG   ERL        + + LL + L +P+VQA+R
Sbjct:  159 FIALSMWPAAIHARTGATRPLLLSGLAAALAFSTHQAGAFAVLIPALAWASA---PRGWQGAERRERLRIGFLCAGLFVVLALTVGHPYLIRYGMTPTEAVAAGEQLA-GSQHVSIGGQSVVFQLSAQTFQKLGKALVGYDPLLLLLALLGFAAGLKQRETRPAVGFALLWGLFFMTNQNDHVRYLVPLAAALAWPAGIACERLLTG----TLTRNLLLLTLCLPVVQALR 381          
BLAST of mRNA_M-pyrifera_M_contig97329.22417.1 vs. uniprot
Match: A0A518EXA9_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EXA9_9BACT)

HSP 1 Score: 142 bits (357), Expect = 2.860e-35
Identity = 92/238 (38.66%), Postives = 132/238 (55.46%), Query Frame = 1
Query:   13 MLLAT-WPAARYVATEKRSALVLACLAAALSFGCHQAGGAALLIPAVAWALVFVRSRAELAAKAG----RLVLDGVLAVAAFVALGVGVGHPYLLVHGRTATDAVVMGEELEQATGAISLGGQGFQPTFRLESFEHLFAAMLSYDPVLVVMGLLGFFVCWRRRCIWPALVFILAWGGLFLFSANDHVRYILPLVGLLCLPAGALVERLHRRFGAPPVLQGLLGVVLLVPLVQAMRFAH 711
            ML AT W AA +  T    +L+L  + A+++F     GG ALL+  VAWAL   R   EL A A     + V+ G   V  FVAL   VG+P+ L +G  A   V  G+ + +    I  GG   +  F L + + L      YDPV++V+G LG F  +RRR + P   F+L WG LFL   N+ VRYI+P+V L+ +PAGA  E L RR    P+ + ++ V++++PLVQA+R  +
Sbjct:  181 MLAATVWGAAVHTRTGSLRSLLLTGVIASMAFSTLPVGGLALLMAGVAWALA-PRPEGELLAPARTAFLKRVVRGFACVGLFVALAAVVGYPFYLRYGEGAVTGVAAGDLVTEDMWTIQFGGTQMRVGFSLATLQGLMRTFFGYDPVILVLGALGVFSAFRRRALMPLGAFLLVWGALFLVGVNEQVRYIIPVVVLMAMPAGAFAEALARR----PLGRVMVAVLMVLPLVQALRLGY 413          
BLAST of mRNA_M-pyrifera_M_contig97329.22417.1 vs. uniprot
Match: A0A521KRH6_9BACT (PMT_2 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521KRH6_9BACT)

HSP 1 Score: 133 bits (334), Expect = 2.980e-32
Identity = 100/247 (40.49%), Postives = 124/247 (50.20%), Query Frame = 1
Query:    1 MVLFMLLATWPAARYVATEKRSALVLACLAAALSFGCHQAGGAALLIPAVAWALVFVRSR-AELAAKAGRLVLDGVLAVAAFVALGVGVGHPYLLVHGRTATDAVVMGEEL---EQATG------AISLGGQGFQPTFRLESFEHLFAAMLSYDPVLVVMGLLGFFVCWRRRCIWPALVFILAWGGLFLFSANDHVRYILPLVGLLCLPAGALVERLHRRFGAPPV--LQGLLGV-VLLVPLVQAMR 702
            +V F+ LA WPAA Y  + +   L+L  LA A  F CHQAG   L +  +AW       R A+L  + G     G   VA F    +  G+P+ LVHG  A      GEEL   +QA         + +GGQ  +   R ESF  L  A + YDP+L+ +GLLG     RRR +    +F L W   FL   NDHVRY+LPLV LL LPAG   E    RF A  V  L GL  V  L  PL+QA R
Sbjct:  152 LVAFVALALWPAALYAQSGRLRHLLLVGLAGAGGFSCHQAGAPLLGLAGLAWLCGPAGWRGADLRRRLGH----GAACVALFAVASLCAGYPFYLVHGG-ADGGTAAGEELMAKQQAEDPNAFGPTLKIGGQMLELKIRPESFARLSRAFVGYDPLLLALGLLGLVAALRRRALRAGAIFALGWAAFFLTQRNDHVRYLLPLVALLALPAGLAFEAAWSRFAAGGVRSLGGLALVGALAFPLLQAAR 393          
BLAST of mRNA_M-pyrifera_M_contig97329.22417.1 vs. uniprot
Match: A0A518D1Q2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Pla163 TaxID=2528008 RepID=A0A518D1Q2_9BACT)

HSP 1 Score: 125 bits (314), Expect = 1.990e-29
Identity = 93/237 (39.24%), Postives = 127/237 (53.59%), Query Frame = 1
Query:   10 FMLLATWPAARYVATEKRSALVLACLAAALSFGCHQAGGAALLIPAVAWALVF----VRSRAELAAKAGRLVLDGVLAVAAFVALGVGVGHPYLLVHGRTATDAVVMGEELEQATGAISLGGQGFQPTFRLESFEHLFAAMLSYDPVLVVMGLLGFFVCWRRRCIWPALVFILAWGGLFLFSANDHVRYILPLVGLLCLPAGALVERLHRRFGAPPVLQGLLGVVLLVPLVQAMRFA 708
            F LLA WPAARY+ T +  ALV   +  A +   HQAG   L I  +AW  +F     RS+ +++ +    ++ G +AVAAF  + V VG+   LVHG  A +A+   ++L      +SLGGQ      R  S   L  AM+ YDPVL ++ L+G     R R      VF L W   F  + NDHVRYILP +  L +PA      L+ R GA   ++GLL  +LL+PLVQ+ R A
Sbjct:  181 FGLLACWPAARYLRTGRLGALVATAVLGAAAAASHQAGLPMLGIAGLAW--LFGPRGFRSKDDVSTR----LVHGAVAVAAFALVAVAVGYNAALVHG--APEAIAGEDDLSGPEADLSLGGQSIVLDIRWASLARLSKAMIGYDPVLCLLALVGLVAALRSRAARVPTVFALLWLAFFTTNQNDHVRYILPGLAFLSVPAAFGARILYER-GA--FVRGLLYALLLIPLVQSARLA 406          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97329.22417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7C8CWL4_9BACT3.190e-4143.97PMT_2 domain-containing protein n=1 Tax=Planctomyc... [more]
A0A2E5X591_9BACT2.820e-3941.20PMT_2 domain-containing protein n=1 Tax=Planctomyc... [more]
A0A2D5XNC6_9BACT4.180e-3740.69Uncharacterized protein n=2 Tax=Planctomycetes bac... [more]
A0A518EXA9_9BACT2.860e-3538.66Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A521KRH6_9BACT2.980e-3240.49PMT_2 domain-containing protein n=1 Tax=Planctomyc... [more]
A0A518D1Q2_9BACT1.990e-2939.24Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97329contigM-pyrifera_M_contig97329:1..711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size711
Cds size711
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816890.0672023-CDS-M-pyrifera_M_contig97329:0..7111622816890.0672023-CDS-M-pyrifera_M_contig97329:0..711Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97329 1..711 -
1692278238.8247485-CDS-M-pyrifera_M_contig97329:0..7111692278238.8247485-CDS-M-pyrifera_M_contig97329:0..711Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97329 1..711 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97329.22417.1prot_M-pyrifera_M_contig97329.22417.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97329 1..711 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97329.22417.1

>prot_M-pyrifera_M_contig97329.22417.1 ID=prot_M-pyrifera_M_contig97329.22417.1|Name=mRNA_M-pyrifera_M_contig97329.22417.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=237bp
MVLFMLLATWPAARYVATEKRSALVLACLAAALSFGCHQAGGAALLIPAV
AWALVFVRSRAELAAKAGRLVLDGVLAVAAFVALGVGVGHPYLLVHGRTA
TDAVVMGEELEQATGAISLGGQGFQPTFRLESFEHLFAAMLSYDPVLVVM
GLLGFFVCWRRRCIWPALVFILAWGGLFLFSANDHVRYILPLVGLLCLPA
GALVERLHRRFGAPPVLQGLLGVVLLVPLVQAMRFAH
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mRNA from alignment at M-pyrifera_M_contig97329:1..711-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97329.22417.1 ID=mRNA_M-pyrifera_M_contig97329.22417.1|Name=mRNA_M-pyrifera_M_contig97329.22417.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=711bp|location=Sequence derived from alignment at M-pyrifera_M_contig97329:1..711- (Macrocystis pyrifera P11B4 male)
ATGGTGTTGTTCATGTTGCTGGCGACGTGGCCGGCGGCGCGCTACGTCGC GACGGAGAAGCGCTCGGCGCTCGTGCTCGCGTGCCTCGCCGCCGCGCTCT CGTTCGGTTGCCACCAAGCCGGCGGCGCGGCACTCCTGATCCCGGCGGTC GCGTGGGCGCTGGTGTTCGTGCGCAGCCGCGCCGAGCTCGCGGCCAAGGC GGGCCGGCTCGTGCTCGACGGCGTGCTCGCCGTGGCGGCGTTCGTCGCGC TCGGCGTGGGCGTCGGGCATCCCTACCTGTTGGTCCACGGCCGCACGGCG ACCGACGCGGTCGTGATGGGCGAGGAGCTCGAGCAGGCCACCGGCGCGAT CTCGCTGGGCGGCCAGGGCTTCCAGCCGACGTTCCGGCTCGAGTCGTTCG AGCATCTGTTCGCCGCGATGTTGAGCTACGACCCGGTGCTGGTCGTGATG GGGCTGCTGGGGTTCTTCGTCTGTTGGCGGCGGCGCTGCATCTGGCCGGC ATTGGTCTTCATCCTCGCGTGGGGCGGGCTGTTCCTGTTCAGCGCCAACG ACCACGTGCGCTACATCCTGCCGCTGGTCGGCCTCTTGTGCCTGCCGGCG GGTGCGCTGGTCGAGCGGCTGCACCGGCGCTTCGGCGCGCCGCCCGTGCT CCAGGGACTCTTGGGCGTCGTGCTGCTCGTGCCGCTGGTCCAGGCGATGC GCTTTGCGCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig97329:1..711-

>mRNA_M-pyrifera_M_contig97329.22417.1 ID=mRNA_M-pyrifera_M_contig97329.22417.1|Name=mRNA_M-pyrifera_M_contig97329.22417.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1422bp|location=Sequence derived from alignment at M-pyrifera_M_contig97329:1..711- (Macrocystis pyrifera P11B4 male)
ATGGTGTTGTTCATGTTGCTGGCGACGTGGCCGGCGGCGCGCTACGTCGC
GACGGAGAAGCGCTCGGCGCTCGTGCTCGCGTGCCTCGCCGCCGCGCTCT
CGTTCGGTTGCCACCAAGCCGGCGGCGCGGCACTCCTGATCCCGGCGGTC
GCGTGGGCGCTGGTGTTCGTGCGCAGCCGCGCCGAGCTCGCGGCCAAGGC
GGGCCGGCTCGTGCTCGACGGCGTGCTCGCCGTGGCGGCGTTCGTCGCGC
TCGGCGTGGGCGTCGGGCATCCCTACCTGTTGGTCCACGGCCGCACGGCG
ACCGACGCGGTCGTGATGGGCGAGGAGCTCGAGCAGGCCACCGGCGCGAT
CTCGCTGGGCGGCCAGGGCTTCCAGCCGACGTTCCGGCTCGAGTCGTTCG
AGCATCTGTTCGCCGCGATGTTGAGCTACGACCCGGTGCTGGTCGTGATG
GGGCTGCTGGGGTTCTTCGTCTGTTGGCGGCGGCGCTGCATCTGGCCGGC
ATTGGTCTTCATCCTCGCGTGGGGCGGGCTGTTCCTGTTCAGCGCCAACG
ACCACGTGCGCTACATCCTGCCGCTGGTCGGCCTCTTGTGCCTGCCGGCG
GGTGCGCTGGTCGAGCGGCTGCACCGGCGCTTCGGCGCGCCGCCCGTGCT
CCAGGGACTCTTGGGCGTCGTGCTGCTCGTGCCGCTGGTCCAGGCGATGC
GCTTTGCGCACATGGTGTTGTTCATGTTGCTGGCGACGTGGCCGGCGGCG
CGCTACGTCGCGACGGAGAAGCGCTCGGCGCTCGTGCTCGCGTGCCTCGC
CGCCGCGCTCTCGTTCGGTTGCCACCAAGCCGGCGGCGCGGCACTCCTGA
TCCCGGCGGTCGCGTGGGCGCTGGTGTTCGTGCGCAGCCGCGCCGAGCTC
GCGGCCAAGGCGGGCCGGCTCGTGCTCGACGGCGTGCTCGCCGTGGCGGC
GTTCGTCGCGCTCGGCGTGGGCGTCGGGCATCCCTACCTGTTGGTCCACG
GCCGCACGGCGACCGACGCGGTCGTGATGGGCGAGGAGCTCGAGCAGGCC
ACCGGCGCGATCTCGCTGGGCGGCCAGGGCTTCCAGCCGACGTTCCGGCT
CGAGTCGTTCGAGCATCTGTTCGCCGCGATGTTGAGCTACGACCCGGTGC
TGGTCGTGATGGGGCTGCTGGGGTTCTTCGTCTGTTGGCGGCGGCGCTGC
ATCTGGCCGGCATTGGTCTTCATCCTCGCGTGGGGCGGGCTGTTCCTGTT
CAGCGCCAACGACCACGTGCGCTACATCCTGCCGCTGGTCGGCCTCTTGT
GCCTGCCGGCGGGTGCGCTGGTCGAGCGGCTGCACCGGCGCTTCGGCGCG
CCGCCCGTGCTCCAGGGACTCTTGGGCGTCGTGCTGCTCGTGCCGCTGGT
CCAGGCGATGCGCTTTGCGCAC
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