mRNA_M-pyrifera_M_contig97306.22410.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97306.22410.1
Unique NamemRNA_M-pyrifera_M_contig97306.22410.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig97306.22410.1 vs. uniprot
Match: A0A7S4IRY2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IRY2_9EUKA)

HSP 1 Score: 145 bits (365), Expect = 3.020e-39
Identity = 64/103 (62.14%), Postives = 75/103 (72.82%), Query Frame = 1
Query:   10 EQAEALTTDLRSGKYECMVCMERIGKKASVWNCSGCFAIFHIRCITTWS-AKSCEEGNSWACPACRYSFTSKPRAGCFCGKASKPAFDPYLVPHACGEMCQRK 315
            EQA  +T  LR G YECMVC +RIGKKA +WNC  CFAIFHI CI  WS A S  E + WACPACR     + ++ CFCGK +KPAFDPYLVPH+CGE C++K
Sbjct:  121 EQALHITKQLRKGAYECMVCFDRIGKKAGIWNCESCFAIFHIGCIQKWSKASSDAEKHIWACPACRSEVRGRAKSRCFCGKVAKPAFDPYLVPHSCGEPCRKK 223          
BLAST of mRNA_M-pyrifera_M_contig97306.22410.1 vs. uniprot
Match: A0A8J4Q0D5_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q0D5_9MYCE)

HSP 1 Score: 120 bits (302), Expect = 1.270e-29
Identity = 45/95 (47.37%), Postives = 63/95 (66.32%), Query Frame = 1
Query:   25 LTTDLRSGKYECMVCMERIGKKASVWNCSGCFAIFHIRCITTWSAKSCEEGNSWACPACRYSFTSKPRAG-CFCGKASKPAFDPYLVPHACGEMC 306
            + + ++   YECMVC E IGK  ++W CS CF +FH+ C+  W+ KS    N W CP CR+  T KP+   CFCGK  +PA++PY +PH+CGE+C
Sbjct: 1113 MISKIQGNTYECMVCFETIGKSTNIWCCSQCFTMFHLSCVKVWATKSNNSENKWKCPGCRFDHTEKPKVSTCFCGKVDEPAYNPYYLPHSCGEVC 1207          
BLAST of mRNA_M-pyrifera_M_contig97306.22410.1 vs. uniprot
Match: F4Q0C1_CAVFA (NF-X1-type zinc finger-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q0C1_CAVFA)

HSP 1 Score: 114 bits (284), Expect = 3.360e-27
Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 1
Query:   37 LRSGKYECMVCMERIGKKASVWNCSGCFAIFHIRCITTWSAKSCEEGNSWACPACRYSFTSKPRAGCFCGKASKPAFDPYLVPHACGEMC 306
            +  G YECMVC + I   A VWNC  CF +FHI C+  W  KS      W CP CR+  T +P + CFCGK   P+++P+L+PH+CG++C
Sbjct:  351 ISKGAYECMVCYDTIKHSAMVWNCPSCFTMFHIGCVKAWLTKSTSTDGKWKCPGCRHVSTERPHSVCFCGKVDDPSYNPFLLPHSCGDVC 440          
BLAST of mRNA_M-pyrifera_M_contig97306.22410.1 vs. uniprot
Match: A0A3S3RMN9_9ACAR (Protein shuttle craft-like protein n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3RMN9_9ACAR)

HSP 1 Score: 107 bits (267), Expect = 6.540e-25
Identity = 48/108 (44.44%), Postives = 68/108 (62.96%), Query Frame = 1
Query:   13 QAEALTTDLRSGKYECMVCMERIGKKASVWNCSGCFAIFHIRCITTW-----SAKSCEEGNS-WACPACRYSFTSKP-RAGCFCGKASKPAFDPYLVPHACGEMCQRK 315
            Q E L   LR+ +YECMVC E +    ++W+C+ C+ +FH+ CI TW     S +S ++G S W CP C++     P R  CFCGK   P F+PYLVPH+CG +C++K
Sbjct:  178 QRELLAEQLRNSEYECMVCCEEVKLNDAIWSCAFCYNMFHLNCIKTWALSNGSVESNQQGQSGWRCPVCQHIEKRIPTRYYCFCGKIKNPEFNPYLVPHSCGNVCRKK 285          
BLAST of mRNA_M-pyrifera_M_contig97306.22410.1 vs. uniprot
Match: L8H0T3_ACACA (PHD-type domain-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H0T3_ACACA)

HSP 1 Score: 103 bits (257), Expect = 1.360e-23
Identity = 44/121 (36.36%), Postives = 67/121 (55.37%), Query Frame = 1
Query:    1 DLGEQAEALTTDLRSGKYECMVCMERIGKKASVWNCSGCFAIFHIRCITTWSAKSCEEG--------------NSWACPACRYSFTSK---PRAGCFCGKASKPAFDPYLVPHACGEMCQR 312
            ++ + AE L   L +  YECM+CM  + ++ S+W+C  C+A+FH+ CI+ WS  S EE               + W CP C  +       P + CFCGK + P F+PY+ PH+CG++C R
Sbjct:  239 EMTDLAEELLAGLLNDSYECMICMNNVRRRQSIWHCEECYALFHLDCISKWSKNSLEEARQVPQGILPQKPPADGWRCPHCNKTHRQHEGPPVSRCFCGKYANPEFNPYITPHSCGDLCGR 359          
BLAST of mRNA_M-pyrifera_M_contig97306.22410.1 vs. uniprot
Match: A0A443SEP0_9ACAR (Protein shuttle craft-like protein n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SEP0_9ACAR)

HSP 1 Score: 103 bits (256), Expect = 2.000e-23
Identity = 48/110 (43.64%), Postives = 64/110 (58.18%), Query Frame = 1
Query:   13 QAEALTTDLRSGKYECMVCMERIGKKASVWNCSGCFAIFHIRCITTWSAKSC--------EEGNSWACPACRYSFTSKP-RAGCFCGKASKPAFDPYLVPHACGEMCQRK 315
            Q E L   LR G+YECMVC E I    S+WNCS C+ IFH++CI  W+  +         ++ + W CPAC+      P R  CFCGK   P  + YLVPH+CG +C++K
Sbjct:  207 QREILEEMLRKGEYECMVCCEEIRVHDSIWNCSNCYNIFHLKCIKQWALSNGSLSVQNTGQQNDGWRCPACQNIEMRVPTRYYCFCGKIRDPDLNHYLVPHSCGNVCRKK 316          
BLAST of mRNA_M-pyrifera_M_contig97306.22410.1 vs. uniprot
Match: A0A2C9JC47_BIOGL (RING-type domain-containing protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9JC47_BIOGL)

HSP 1 Score: 102 bits (255), Expect = 2.710e-23
Identity = 50/123 (40.65%), Postives = 65/123 (52.85%), Query Frame = 1
Query:    1 DLGEQAEALTTDLRSGKYECMVCMERIGKKASVWNCSGCFAIFHIRCITTWSA-----KSCEEGN----------SWACPACRYSFT---SKPRAGCFCGKASKPAFDPYLVPHACGEMCQRK 315
            D+    E L    RSG   C+VC+E I K+ ++WNC GCF +FHI CI  W       K    G+          SW CP CR+ ++   S  +  CFCGK   P FDP+ VPH+CG +C RK
Sbjct:  132 DVQSAQEKLLHSFRSGTSACLVCIETIKKEEAIWNCYGCFCMFHITCIQKWVREGVYQKQYSSGDFIQEKSSTPISWHCPKCRHEYSQNESPTKYFCFCGKVENPKFDPWFVPHSCGAVCGRK 254          
BLAST of mRNA_M-pyrifera_M_contig97306.22410.1 vs. uniprot
Match: A0A2R5LDZ7_9ACAR (Putative nuclear transcription factor x-box binding protein (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5LDZ7_9ACAR)

HSP 1 Score: 102 bits (255), Expect = 2.710e-23
Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = 1
Query:    1 DLGEQAEALTTDLRSGKYECMVCMERIGKKASVWNCSGCFAIFHIRCITTWSAKSCEEGNS----------WACPACRYSFTSKPRAG---CFCGKASKPAFDPYLVPHACGEMCQR 312
            DL +  + LT +L SG   C+VC+E + +  +VW+C+GC+ I H+ CI  W+  S  +  S          W CP CR  +          CFCGK + PAFDP+LVPH+CG+MC++
Sbjct:  120 DLRKTVQFLTDNLVSGATVCLVCIESVKRNEAVWSCNGCYCILHLGCIQKWAKDSTFQQTSTPDQPAFSSQWNCPKCRKGYRGTENLSKYLCFCGKVADPAFDPWLVPHSCGQMCEQ 236          
BLAST of mRNA_M-pyrifera_M_contig97306.22410.1 vs. uniprot
Match: UPI001E1DFADE (NF-X1-type zinc finger protein NFXL1-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DFADE)

HSP 1 Score: 102 bits (255), Expect = 2.720e-23
Identity = 50/121 (41.32%), Postives = 67/121 (55.37%), Query Frame = 1
Query:    1 DLGEQAEALTTDLRSGKYECMVCMERIGKKASVWNCSGCFAIFHIRCITTWSA--------KSCE-----EGNSWACPACRYSFTSKPRAG---CFCGKASKPAFDPYLVPHACGEMCQRK 315
            D+ +  + L    RSG   C+VC+E I K   +W+C GC+AIFHI+CI  W          KS +     E   W CP CR  ++ K R     C+CGK  +P FDP+LVPH+CG+ C RK
Sbjct:  136 DVDQAQDTLLHSFRSGTSACLVCIETIKKTDPIWSCEGCYAIFHIQCIQKWVKDGVYQQIYKSDDDNIRPEDIPWHCPKCRLEYSQKLRPTRYLCYCGKVEEPQFDPWLVPHSCGQTCGRK 256          
BLAST of mRNA_M-pyrifera_M_contig97306.22410.1 vs. uniprot
Match: A0A0V0R1C2_PSEPJ (Uncharacterized protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0R1C2_PSEPJ)

HSP 1 Score: 102 bits (254), Expect = 3.800e-23
Identity = 42/97 (43.30%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   49 KYECMVCMERIGKKASVWNCSGCFAIFHIRCITTW-------SAKSCEEGNSWACPACRYSFTSK-PRAGCFCGKASKPAFDPYLVPHACGEMCQRK 315
            K ECM+C E++GK+  +WNC  C+  FH+ C   W         KS E+  +W CP C Y +T K P   CFCG+ + P F  YL+PH+CGE C++K
Sbjct:  311 KIECMICQEKMGKEGRIWNCQRCYQPFHLSCTKRWIFANESNKQKSKEDLYNWNCPKCNYIYTDKVPEYTCFCGRIANPEFQSYLLPHSCGETCEKK 407          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97306.22410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4IRY2_9EUKA3.020e-3962.14Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A8J4Q0D5_9MYCE1.270e-2947.37Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
F4Q0C1_CAVFA3.360e-2746.67NF-X1-type zinc finger-containing protein n=1 Tax=... [more]
A0A3S3RMN9_9ACAR6.540e-2544.44Protein shuttle craft-like protein n=1 Tax=Dinothr... [more]
L8H0T3_ACACA1.360e-2336.36PHD-type domain-containing protein n=1 Tax=Acantha... [more]
A0A443SEP0_9ACAR2.000e-2343.64Protein shuttle craft-like protein n=1 Tax=Leptotr... [more]
A0A2C9JC47_BIOGL2.710e-2340.65RING-type domain-containing protein n=1 Tax=Biomph... [more]
A0A2R5LDZ7_9ACAR2.710e-2339.32Putative nuclear transcription factor x-box bindin... [more]
UPI001E1DFADE2.720e-2341.32NF-X1-type zinc finger protein NFXL1-like n=1 Tax=... [more]
A0A0V0R1C2_PSEPJ3.800e-2343.30Uncharacterized protein n=1 Tax=Pseudocohnilembus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97306contigM-pyrifera_M_contig97306:382..696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.2
Seed ortholog evalue2.2e-24
Seed eggNOG ortholog5786.XP_003286413.1
KEGG koko:K12236
KEGG Pathwayko05165,map05165
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000976,GO:0000977,GO:0000981,GO:0000982,GO:0001012,GO:0001067,GO:0001078,GO:0001227,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006082,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006970,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009636,GO:0009642,GO:0009651,GO:0009696,GO:0009697,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010188,GO:0010310,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010817,GO:0016053,GO:0016070,GO:0016999,GO:0017000,GO:0017144,GO:0018130,GO:0018958,GO:0019219,GO:0019222,GO:0019438,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032774,GO:0032787,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042445,GO:0042446,GO:0042537,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0045892,GO:0045934,GO:0046189,GO:0046394,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051193,GO:0051252,GO:0051253,GO:0051704,GO:0051707,GO:0060255,GO:0065007,GO:0065008,GO:0071704,GO:0072330,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0098542,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901615,GO:1901617,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2000377,GO:2001141
EggNOG free text desc.ZnF_NFX
EggNOG OGs3X8AV@554915,KOG1952@1,KOG1952@2759
COG Functional cat.K
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000,ko04121
Exons1
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816889.6931436-CDS-M-pyrifera_M_contig97306:381..6961622816889.6931436-CDS-M-pyrifera_M_contig97306:381..696Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97306 382..696 +
1692278238.6117883-CDS-M-pyrifera_M_contig97306:381..6961692278238.6117883-CDS-M-pyrifera_M_contig97306:381..696Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97306 382..696 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97306.22410.1prot_M-pyrifera_M_contig97306.22410.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97306 382..696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97306.22410.1

>prot_M-pyrifera_M_contig97306.22410.1 ID=prot_M-pyrifera_M_contig97306.22410.1|Name=mRNA_M-pyrifera_M_contig97306.22410.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
DLGEQAEALTTDLRSGKYECMVCMERIGKKASVWNCSGCFAIFHIRCITT
WSAKSCEEGNSWACPACRYSFTSKPRAGCFCGKASKPAFDPYLVPHACGE
MCQRK
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mRNA from alignment at M-pyrifera_M_contig97306:382..696+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97306.22410.1 ID=mRNA_M-pyrifera_M_contig97306.22410.1|Name=mRNA_M-pyrifera_M_contig97306.22410.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig97306:382..696+ (Macrocystis pyrifera P11B4 male)
GACCTGGGCGAGCAGGCAGAGGCCCTCACCACCGACCTCCGGTCTGGGAA GTACGAGTGCATGGTGTGCATGGAGAGGATTGGCAAGAAGGCGTCGGTGT GGAACTGCAGCGGCTGCTTCGCCATCTTCCACATTCGCTGCATCACCACG TGGTCTGCGAAGAGCTGCGAAGAGGGCAACTCCTGGGCCTGCCCTGCATG CCGCTACAGCTTCACCAGCAAGCCTCGCGCAGGCTGCTTCTGCGGCAAGG CCTCCAAGCCCGCCTTCGACCCCTACCTCGTCCCACACGCGTGCGGCGAG ATGTGCCAGCGCAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig97306:382..696+

>mRNA_M-pyrifera_M_contig97306.22410.1 ID=mRNA_M-pyrifera_M_contig97306.22410.1|Name=mRNA_M-pyrifera_M_contig97306.22410.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig97306:382..696+ (Macrocystis pyrifera P11B4 male)
GACCTGGGCGAGCAGGCAGAGGCCCTCACCACCGACCTCCGGTCTGGGAA
GTACGAGTGCATGGTGTGCATGGAGAGGATTGGCAAGAAGGCGTCGGTGT
GGAACTGCAGCGGCTGCTTCGCCATCTTCCACATTCGCTGCATCACCACG
TGGTCTGCGAAGAGCTGCGAAGAGGGCAACTCCTGGGCCTGCCCTGCATG
CCGCTACAGCTTCACCAGCAAGCCTCGCGCAGGCTGCTTCTGCGGCAAGG
CCTCCAAGCCCGCCTTCGACCCCTACCTCGTCCCACACGCGTGCGGCGAG
ATGTGCCAGCGCAAGGACCTGGGCGAGCAGGCAGAGGCCCTCACCACCGA
CCTCCGGTCTGGGAAGTACGAGTGCATGGTGTGCATGGAGAGGATTGGCA
AGAAGGCGTCGGTGTGGAACTGCAGCGGCTGCTTCGCCATCTTCCACATT
CGCTGCATCACCACGTGGTCTGCGAAGAGCTGCGAAGAGGGCAACTCCTG
GGCCTGCCCTGCATGCCGCTACAGCTTCACCAGCAAGCCTCGCGCAGGCT
GCTTCTGCGGCAAGGCCTCCAAGCCCGCCTTCGACCCCTACCTCGTCCCA
CACGCGTGCGGCGAGATGTGCCAGCGCAAG
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