mRNA_M-pyrifera_M_contig9728.22402.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9728.22402.1
Unique NamemRNA_M-pyrifera_M_contig9728.22402.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9728.22402.1 vs. uniprot
Match: D7FJ11_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ11_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 5.110e-39
Identity = 80/91 (87.91%), Postives = 87/91 (95.60%), Query Frame = 2 
Query:    2 KGEARTLAEVENAIEDLKGATKLFSWLKDCEPDRTGNVHRHLPYDSNKAEKHAKFCYDNIERAAQHLNHEKAKANQQQEVRERHQRALEKV 274
            KGEARTLAEVENAIEDLKGATKLFSWLKDC+PD+TG V RHLPYD++KAEKHAKFC+DNIERAAQHLNHEK KA+QQQEV ERHQRALEK+
Sbjct:  974 KGEARTLAEVENAIEDLKGATKLFSWLKDCKPDKTGGV-RHLPYDASKAEKHAKFCFDNIERAAQHLNHEKMKADQQQEVHERHQRALEKM 1063
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BLAST of mRNA_M-pyrifera_M_contig9728.22402.1 vs. uniprot
Match: A0A835YZR8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZR8_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.590e-6
Identity = 45/110 (40.91%), Postives = 51/110 (46.36%), Query Frame = 2 
Query:    2 KGEARTLAEVENAIEDLKGATKLFSWLKDCEPDRTGNVHRHLPYDSNKAE------------------KHAKFCYDNIERAAQHLNHEKAKANQQQEVRERHQRALEKVG 277
            KGE RTLAEVE AI+DL+GA  LFS L    PD+     + LPY    A                   KHA FC  NI  A QHL HEK K            +ALE+ G
Sbjct:  277 KGEQRTLAEVEGAIDDLRGAAALFSSLSQRAPDK-----KPLPYRQEAAAVXXXXXXXXXXXXXXXAAKHANFCTGNISSAHQHLQHEKMKEXXXXXXXXXXXKALEEAG 381
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9728.22402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJ11_ECTSI5.110e-3987.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YZR8_9STRA1.590e-640.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9728contigM-pyrifera_M_contig9728:7254..9260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.1
Seed ortholog evalue2.3e-34
Seed eggNOG ortholog2880.D7FJ11
Preferred nameCTR9
KEGG koko:K08399,ko:K15176
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000082,GO:0000083,GO:0000122,GO:0000278,GO:0000414,GO:0000416,GO:0000428,GO:0000785,GO:0000988,GO:0000989,GO:0000993,GO:0001015,GO:0001076,GO:0001098,GO:0001099,GO:0001701,GO:0001704,GO:0001706,GO:0001711,GO:0001824,GO:0001825,GO:0001826,GO:0001829,GO:0001832,GO:0001932,GO:0001934,GO:0002237,GO:0002682,GO:0002683,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006282,GO:0006325,GO:0006351,GO:0006353,GO:0006354,GO:0006355,GO:0006356,GO:0006357,GO:0006360,GO:0006362,GO:0006366,GO:0006368,GO:0006396,GO:0006397,GO:0006464,GO:0006479,GO:0006513,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007154,GO:0007165,GO:0007166,GO:0007259,GO:0007275,GO:0007276,GO:0007281,GO:0007369,GO:0007399,GO:0007406,GO:0007492,GO:0008023,GO:0008150,GO:0008152,GO:0008213,GO:0008285,GO:0009058,GO:0009059,GO:0009302,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009909,GO:0009910,GO:0009987,GO:0010033,GO:0010390,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010721,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016074,GO:0016567,GO:0016569,GO:0016570,GO:0016571,GO:0016574,GO:0016591,GO:0016593,GO:0018022,GO:0018023,GO:0018130,GO:0018193,GO:0018205,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0019899,GO:0019904,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0023052,GO:0030154,GO:0030880,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031123,GO:0031124,GO:0031126,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031440,GO:0031441,GO:0031935,GO:0031938,GO:0031974,GO:0031981,GO:0032259,GO:0032268,GO:0032270,GO:0032446,GO:0032496,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033043,GO:0033044,GO:0033182,GO:0033184,GO:0033523,GO:0033993,GO:0034097,GO:0034243,GO:0034470,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0034968,GO:0035327,GO:0035556,GO:0035987,GO:0036211,GO:0040007,GO:0042127,GO:0042169,GO:0042221,GO:0042325,GO:0042327,GO:0043009,GO:0043144,GO:0043170,GO:0043175,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043412,GO:0043414,GO:0043628,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044843,GO:0044877,GO:0045142,GO:0045165,GO:0045309,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045937,GO:0045943,GO:0045944,GO:0046483,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048581,GO:0048583,GO:0048589,GO:0048598,GO:0048609,GO:0048646,GO:0048699,GO:0048731,GO:0048831,GO:0048856,GO:0048869,GO:0050684,GO:0050686,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050815,GO:0050896,GO:0051052,GO:0051093,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051219,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051568,GO:0051569,GO:0051571,GO:0051704,GO:0051707,GO:0051716,GO:0051960,GO:0051961,GO:0055029,GO:0060255,GO:0060260,GO:0060284,GO:0060795,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070063,GO:0070102,GO:0070647,GO:0070741,GO:0070887,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071345,GO:0071354,GO:0071396,GO:0071704,GO:0071840,GO:0072091,GO:0080090,GO:0080134,GO:0080135,GO:0080182,GO:0090262,GO:0090304,GO:0097159,GO:0097659,GO:0097696,GO:0098727,GO:0098781,GO:0099122,GO:0140110,GO:1900363,GO:1900364,GO:1901360,GO:1901362,GO:1901363,GO:1901407,GO:1901409,GO:1901564,GO:1901576,GO:1901700,GO:1901701,GO:1902275,GO:1902494,GO:1902679,GO:1902680,GO:1902692,GO:1903047,GO:1903311,GO:1903312,GO:1903320,GO:1903322,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1903707,GO:1905269,GO:1990234,GO:1990269,GO:2000026,GO:2000112,GO:2000113,GO:2000142,GO:2000177,GO:2000178,GO:2000241,GO:2000242,GO:2000647,GO:2000653,GO:2000819,GO:2001020,GO:2001141,GO:2001160,GO:2001162,GO:2001163,GO:2001165,GO:2001166,GO:2001168,GO:2001173,GO:2001207,GO:2001209,GO:2001252,GO:2001253,GO:2001255
EggNOG free text desc.regulation of histone H3-K4 methylation
EggNOG OGsCOG0457@1,KOG2002@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021,ko04030
Exons3
Model size1136
Cds size522
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9728.22402.1prot_M-pyrifera_M_contig9728.22402.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9728 8396..8917 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816889.223715-UTR-M-pyrifera_M_contig9728:7253..73081622816889.223715-UTR-M-pyrifera_M_contig9728:7253..7308Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9728 7254..7308 +
1692278238.2788124-UTR-M-pyrifera_M_contig9728:7253..73081692278238.2788124-UTR-M-pyrifera_M_contig9728:7253..7308Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9728 7254..7308 +
1622816889.2368999-UTR-M-pyrifera_M_contig9728:8021..82371622816889.2368999-UTR-M-pyrifera_M_contig9728:8021..8237Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9728 8022..8237 +
1692278238.2924893-UTR-M-pyrifera_M_contig9728:8021..82371692278238.2924893-UTR-M-pyrifera_M_contig9728:8021..8237Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9728 8022..8237 +
1622816889.2618413-UTR-M-pyrifera_M_contig9728:8917..92601622816889.2618413-UTR-M-pyrifera_M_contig9728:8917..9260Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9728 8918..9260 +
1692278238.3114216-UTR-M-pyrifera_M_contig9728:8917..92601692278238.3114216-UTR-M-pyrifera_M_contig9728:8917..9260Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9728 8918..9260 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816889.2509966-CDS-M-pyrifera_M_contig9728:8395..89171622816889.2509966-CDS-M-pyrifera_M_contig9728:8395..8917Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9728 8396..8917 +
1692278238.3020055-CDS-M-pyrifera_M_contig9728:8395..89171692278238.3020055-CDS-M-pyrifera_M_contig9728:8395..8917Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9728 8396..8917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9728.22402.1

>prot_M-pyrifera_M_contig9728.22402.1 ID=prot_M-pyrifera_M_contig9728.22402.1|Name=mRNA_M-pyrifera_M_contig9728.22402.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=174bp
MVQQRKQEEEDARRRQESSALQRAERAKIKQASLNKLQESWTSQSHTTLS
KPGGGKLGRGEHGSDAPQFESGSEDDADVLSEPEEDGAGQADRYGDVGAE
TSETPAPMQQANLKDIGLSSSSDDSDGVFGGDGDEDREEGGEGRKRKWDS
DEEDGQTEDAASAAKRRTVGDSE*
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mRNA from alignment at M-pyrifera_M_contig9728:7254..9260+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9728.22402.1 ID=mRNA_M-pyrifera_M_contig9728.22402.1|Name=mRNA_M-pyrifera_M_contig9728.22402.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2007bp|location=Sequence derived from alignment at M-pyrifera_M_contig9728:7254..9260+ (Macrocystis pyrifera P11B4 male)
GAAGGGAGAAGCGCGCACCCTGGCTGAGGTGGAGAACGCCATCGAAGATC
TTAAGGTATTGTAAACCTCGATTCCTATATAGCATACGGCGTGAACGAAG
AGCGGAGGCTTGCCATTATTGGGTCCAGGCTCATGAAGCATTCGTAAGGA
TTCCCGGTTCGTGAAGATTGCTCTCCGCGGACATATTAATACGGGAGTCG
CCAGGGAAACAGCTCTTACAGCAGTGTTTCCTATGGCTTCCTGCTTTGAG
TGCATCGAATATTAGTGATTGCGCGCTGCCGTTGTTTTCTGTTACTGTAA
CATGAGTAGATGAAAGACCGACTCCAACGCATGAAAATTCTGCCGGGTGT
GTCAGTATGGTTGCCTATCGACCATTTAATGTCTGTTCTGTATTTATTGT
ATACACACGATAGGTCGTCGATCTCTGTTAGTACCCCGCGGACGTTCAAC
GTAAAACGAAGCTTAGGCGAAAGCCGACACACACGCCGGTCGACCTTGTA
CTCGCGAACCGTGTGTGCGATTCACACGCCATGGGCACACCCAGAGTGTG
TTCGCGGGGTGAAGCCAGCGTAGGTGCACACGCAGTTTGGCGGGATCTGG
CTGCGTCAGCGCGCGGGCCAGTAAATGTTTTACGCCAACTTGAACAACAT
AACCTACTAAGAGATTAATAGCGATAGACACAAATAAACTATATTTTGTC
AACGCGTTTATCCGGGAAATGAAAAAACGTGTGCAATGCGGTGCCCTACC
CTAATGTTTTGGTCTCAGGGTGCAACGAAGCTGTTTTCCTGGCTGAAGGA
CTGCGAGCCAGACAGAACCGGAAACGTACATCGTCATCTACCGTACGACT
CCAACAAGGCTGAGAAGCACGCCAAGTTCTGCTACGACAACATCGAACGC
GCAGCTCAGCACCTCAACCACGAGAAGGCGAAAGCGAATCAACAACAGGA
AGTTCGCGAGCGGCACCAGCGTGCGCTGGAAAAGGTTGGCACTTGTATTG
TGTGCAGTTCATTCAGGTTTGACTGATGCCTCGTTGCGCCCGGTTGTTGA
AATGTGTTCACAAATGTGTTGTAAATGACCCGCATTCCTGTCACAGATTT
CTGTGTGCCGTAAAAATGTTCCCTTCTTTGACGCTCAAGCAGATGGTCCA
GCAACGCAAGCAGGAGGAGGAGGACGCGAGGCGGCGCCAGGAGTCTAGCG
CTCTTCAACGGGCAGAACGAGCTAAAATCAAGCAGGCAAGTCTCAACAAG
CTTCAAGAGAGTTGGACCTCTCAGTCACACACGACTTTGAGTAAGCCCGG
GGGCGGTAAGCTGGGAAGGGGGGAGCACGGCTCAGACGCGCCGCAGTTCG
AGAGCGGATCAGAGGACGATGCAGACGTATTGTCCGAACCCGAGGAGGAC
GGGGCAGGGCAAGCAGACAGATACGGAGACGTCGGCGCTGAGACGAGCGA
AACGCCAGCCCCGATGCAACAGGCGAATCTGAAAGACATCGGCCTGTCGT
CCAGCAGTGACGATTCGGACGGTGTGTTCGGCGGAGACGGAGACGAAGAC
CGCGAGGAGGGCGGCGAAGGGCGAAAAAGAAAATGGGACAGCGATGAAGA
GGACGGGCAGACGGAGGACGCGGCGTCCGCTGCGAAGAGGCGAACGGTTG
GAGATTCTGAGTAACTTTGATTATCACTGTTGGGGATTCTGAGAAAAAAA
TATTTGTGGACAGCAGGGACAGGGCGCAAAAGTTGTCATTTCCGACGTGT
GATGAACGAGACCGCGCTGAGATTAGTAGCAGTGTCGTTTCGTGTGGACT
GTGCCGCGTTTTGCCACGCACTCGTATTATTTGGCGTTTGGTTTCGCTTC
GTGTCTTATTCGTCTCGCAGTAGTGGCGGCGCCTAGAATACTGCGCTGGT
CTCAGGGAATAGATGGATTTCGCAGAAGCGGAGGCGTCGTGTGCTCTGCG
AGGAGTAAGTTGGGCAGATCAATAAACATGTGATGATCACAATCGAAAAG
CAGACGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9728:7254..9260+

>mRNA_M-pyrifera_M_contig9728.22402.1 ID=mRNA_M-pyrifera_M_contig9728.22402.1|Name=mRNA_M-pyrifera_M_contig9728.22402.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1044bp|location=Sequence derived from alignment at M-pyrifera_M_contig9728:7254..9260+ (Macrocystis pyrifera P11B4 male)
ATGGTCCAGCAACGCAAGCAGGAGGAGGAGGACGCGAGGCGGCGCCAGGA
GTCTAGCGCTCTTCAACGGGCAGAACGAGCTAAAATCAAGCAGGCAAGTC
TCAACAAGCTTCAAGAGAGTTGGACCTCTCAGTCACACACGACTTTGAGT
AAGCCCGGGGGCGGTAAGCTGGGAAGGGGGGAGCACGGCTCAGACGCGCC
GCAGTTCGAGAGCGGATCAGAGGACGATGCAGACGTATTGTCCGAACCCG
AGGAGGACGGGGCAGGGCAAGCAGACAGATACGGAGACGTCGGCGCTGAG
ACGAGCGAAACGCCAGCCCCGATGCAACAGGCGAATCTGAAAGACATCGG
CCTGTCGTCCAGCAGTGACGATTCGGACGGTGTGTTCGGCGGAGACGGAG
ACGAAGACCGCGAGGAGGGCGGCGAAGGGCGAAAAAGAAAATGGGACAGC
GATGAAGAGGACGGGCAGACGGAGGACGCGGCGTCCGCTGCGAAGAGGCG
AACGGTTGGAGATTCTGAGTAAATGGTCCAGCAACGCAAGCAGGAGGAGG
AGGACGCGAGGCGGCGCCAGGAGTCTAGCGCTCTTCAACGGGCAGAACGA
GCTAAAATCAAGCAGGCAAGTCTCAACAAGCTTCAAGAGAGTTGGACCTC
TCAGTCACACACGACTTTGAGTAAGCCCGGGGGCGGTAAGCTGGGAAGGG
GGGAGCACGGCTCAGACGCGCCGCAGTTCGAGAGCGGATCAGAGGACGAT
GCAGACGTATTGTCCGAACCCGAGGAGGACGGGGCAGGGCAAGCAGACAG
ATACGGAGACGTCGGCGCTGAGACGAGCGAAACGCCAGCCCCGATGCAAC
AGGCGAATCTGAAAGACATCGGCCTGTCGTCCAGCAGTGACGATTCGGAC
GGTGTGTTCGGCGGAGACGGAGACGAAGACCGCGAGGAGGGCGGCGAAGG
GCGAAAAAGAAAATGGGACAGCGATGAAGAGGACGGGCAGACGGAGGACG
CGGCGTCCGCTGCGAAGAGGCGAACGGTTGGAGATTCTGAGTAA
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