mRNA_M-pyrifera_M_contig97247.22399.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig97247.22399.1 vs. uniprot
Match: A0A355DDS8_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A355DDS8_9ACTN) HSP 1 Score: 98.6 bits (244), Expect = 6.740e-23 Identity = 52/110 (47.27%), Postives = 69/110 (62.73%), Query Frame = 1 Query: 4 VVRDAWASDGVGLGWLIVVIGLLALLLTFPAAGLGGADDLARWRASAGVVGLGAALMAISAGWIVSLLRVADPGAVTGVGSFLVLVGGFFFLASARPMVTNLDRARRYDD 333 V+ D DG GLG L + G LA L PA+G+ G+++ RWR SA V GLG +M + GW+ SLLRV VTG G+FL ++GGFF LA+ARP++ R + YDD Sbjct: 141 VILDGLTEDGGGLGRLALFAGALASLFVLPASGVLGSNEHLRWRWSAVVAGLGFGIMLLGVGWVASLLRVGPRLIVTGAGAFLTILGGFFILATARPLLAEFRRKKVYDD 250
BLAST of mRNA_M-pyrifera_M_contig97247.22399.1 vs. uniprot
Match: A0A6N9A0G1_9ACTN (ABC transporter permease subunit n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N9A0G1_9ACTN) HSP 1 Score: 99.8 bits (247), Expect = 4.050e-22 Identity = 52/105 (49.52%), Postives = 70/105 (66.67%), Query Frame = 1 Query: 13 DAWASDGVGLGWLIVVIGLLALLLTFPAAGLGGADDLARWRASAGVVGLGAALMAISAGWIVSLLRVADPGAVTGVGSFLVLVGGFFFLASARPMVTNLDRARRY 327 D ++ G LG+L + +G+ ALLLT PAAGL G D+ RWR S GV +G +M ++AGWI SL+RV+DP V+G G+FL LV GF F ASAR ++ R + Y Sbjct: 595 DGFSGAGPRLGYLTLWLGVAALLLTLPAAGLFGRDEQLRWRWSIGVAAVGVGVMLVAAGWISSLVRVSDPNFVSGPGAFLCLVAGFLFFASARGVLREFQRTKVY 699
BLAST of mRNA_M-pyrifera_M_contig97247.22399.1 vs. uniprot
Match: A0A2E0T2I4_9ACTN (ABC transmembrane type-1 domain-containing protein n=3 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0T2I4_9ACTN) HSP 1 Score: 89.4 bits (220), Expect = 1.780e-18 Identity = 45/111 (40.54%), Postives = 66/111 (59.46%), Query Frame = 1 Query: 4 VVRDAWASDGVGLGWLIVVIGLLALLLTFPAAGL-GGADDLARWRASAGVVGLGAALMAISAGWIVSLLRVADPGAVTGVGSFLVLVGGFFFLASARPMVTNLDRARRYDD 333 ++ D+W G G+GW V++ +L+L A+GL G ++ +WR SA +GLGAA + WI S+ R DP + GVGSFLV+V G FF++S R +V R +DD Sbjct: 575 IISDSWTDIGAGMGWPSVILAVLSLGAVLVASGLIGSSEQHRKWRWSAISMGLGAATSVVGLAWIASVTRATDPSYIVGVGSFLVMVAGIFFISSGRALVREFFRTEVFDD 685
BLAST of mRNA_M-pyrifera_M_contig97247.22399.1 vs. uniprot
Match: A0A358A0V5_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A358A0V5_9ACTN) HSP 1 Score: 87.8 bits (216), Expect = 5.120e-18 Identity = 44/111 (39.64%), Postives = 66/111 (59.46%), Query Frame = 1 Query: 4 VVRDAWASDGVGLGWLIVVIGLLALLLTFPAAGL-GGADDLARWRASAGVVGLGAALMAISAGWIVSLLRVADPGAVTGVGSFLVLVGGFFFLASARPMVTNLDRARRYDD 333 ++ D+W G G+GW +++ +L+L A+GL G ++ +WR SA +GLGAA + WI S+ R DP + GVGSFLV+V G FF++S R +V R +DD Sbjct: 330 IISDSWTDIGAGMGWPSLILAILSLGAVLVASGLIGSSEQHRKWRWSAISMGLGAATSVVGLAWIASVTRATDPSYIVGVGSFLVMVAGIFFVSSGRGLVREFFRTEVFDD 440
BLAST of mRNA_M-pyrifera_M_contig97247.22399.1 vs. uniprot
Match: A0A3C1JIN8_9ACTN (ABC transmembrane type-1 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C1JIN8_9ACTN) HSP 1 Score: 87.8 bits (216), Expect = 6.220e-18 Identity = 48/111 (43.24%), Postives = 68/111 (61.26%), Query Frame = 1 Query: 4 VVRDAWASDGVGLGWLIVVIGLLALLLTFPAAGL--GGADDLARWRASAGVVGLGAALMAISAGWIVSLLRVADPGAVTGVGSFLVLVGGFFFLASARPMVTNLDRARRYD 330 V+ D + G GLGW+ +++GL+AL+ PA+GL G D L RW G +GLG L+A++ GWI S+ RVADP V+GVGS VL+GG +S R + +R Y+ Sbjct: 650 VIFDGFTRQGGGLGWISLILGLIALVCALPASGLFSGEEDYLYRWCTIVGGLGLG--LLALAVGWIASITRVADPNLVSGVGSLFVLLGGLSIASSVRQTLAEFNRKEVYE 758
BLAST of mRNA_M-pyrifera_M_contig97247.22399.1 vs. uniprot
Match: A0A6L7NFZ1_9ACTN (ABC transporter permease subunit n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6L7NFZ1_9ACTN) HSP 1 Score: 82.8 bits (203), Expect = 3.520e-16 Identity = 45/105 (42.86%), Postives = 63/105 (60.00%), Query Frame = 1 Query: 13 DAWASDGVGLGWLIVVIGLLALLLTFPAAGLGGADDLARWRASAGVVGLGAALMAISAGWIVSLLRVADPGAVTGVGSFLVLVGGFFFLASARPMVTNLDRARRY 327 + + G GLG+L + +G+ L+LT PAAGL D+ R V LGA ++AGWI SL+RV+DPG V+G G+FL L+GG F S+R ++ R R Y Sbjct: 576 NGFEEAGPGLGYLALGLGVAGLVLTLPAAGLFAGDERWRXXXXVAVSALGAGTTLVAAGWIASLVRVSDPGFVSGPGAFLCLLGGLFLFISSRRVLREFRRTRVY 680
BLAST of mRNA_M-pyrifera_M_contig97247.22399.1 vs. uniprot
Match: A0A3D0TR87_9ACTN (ABC transmembrane type-1 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3D0TR87_9ACTN) HSP 1 Score: 82.0 bits (201), Expect = 6.640e-16 Identity = 44/110 (40.00%), Postives = 70/110 (63.64%), Query Frame = 1 Query: 4 VVRDAWASDGVGLGWLIVVIGLLALLLTFPAAGLGGADDLARWRASAGVVGLGAALMAISAGWIVSLLRVADPGAVTGVGSFLVLVGGFFFLASARPMVTNLDRARRYDD 333 VV D + S+G GLG +++GL+AL L PAAG+ G ++ +R SA V GLG L I GWI+SL+R AD V+G+G+ LVL+ G ++ + +++ +R ++Y + Sbjct: 699 VVWDGFTSEGAGLGLWSLLLGLVALALVLPAAGVFGIEESRLYRWSAPVGGLGLGLAVIGGGWIMSLVRTADTNFVSGMGAVLVLLAGVVVFSTVKSTLSDFERNKQYQE 808
BLAST of mRNA_M-pyrifera_M_contig97247.22399.1 vs. uniprot
Match: A0A351ER17_9ACTN (ABC transmembrane type-1 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351ER17_9ACTN) HSP 1 Score: 80.9 bits (198), Expect = 1.680e-15 Identity = 44/108 (40.74%), Postives = 60/108 (55.56%), Query Frame = 1 Query: 10 RDAWASDGVGLGWLIVVIGLLALLLTFPAAGLGGADDLARWRASAGVVGLGAALMAISAGWIVSLLRVADPGAVTGVGSFLVLVGGFFFLASARPMVTNLDRARRYDD 333 R SDG GLG+ ++ +G+L + + AGL GA + ARW+ + GLG A + I A WI S R +P A+TG GSF LVGG A+ R +V R + Y D Sbjct: 647 RTGLDSDGPGLGYPMIALGVLGAISSLFGAGLFGAGEQARWKGATITAGLGLANIVIPASWIFSFTRSGEPKAITGAGSFFALVGGVILFAAGRGVVNEFRRRKVYAD 754
BLAST of mRNA_M-pyrifera_M_contig97247.22399.1 vs. uniprot
Match: A0A7K2AIW5_9ACTN (ABC transporter permease subunit n=2 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2AIW5_9ACTN) HSP 1 Score: 78.6 bits (192), Expect = 1.080e-14 Identity = 41/106 (38.68%), Postives = 61/106 (57.55%), Query Frame = 1 Query: 13 DAWASDGVGLGWLIVVIGLLALLLTFPAAGLGGADDLARWRASAGVVGLGAALMAISAGWIVSLLRVADPGAVTGVGSFLVLVGGFFFLASARPMVTNLDRARRYD 330 D + G GLG L + +G++ L + PAAG+ G + RW S V +G ++ S GWI SL+R +D G V+G GSFL L+ GFF S+R ++ R+ Y+ Sbjct: 585 DGFEEKGPGLGRLALWLGVVGALFSLPAAGVFGGGERRRWMWSVAVSAIGVGVLLASGGWIASLVRASDAGFVSGFGSFLCLLAGFFLFISSRGVLKEFRRSMVYE 690
BLAST of mRNA_M-pyrifera_M_contig97247.22399.1 vs. uniprot
Match: A0A6B1AY66_9ACTN (ABC transporter permease subunit n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1AY66_9ACTN) HSP 1 Score: 61.2 bits (147), Expect = 1.290e-8 Identity = 35/109 (32.11%), Postives = 54/109 (49.54%), Query Frame = 1 Query: 7 VRDAWASDGVGLGWLIVVIGLLALLLTFPAAGLGGADDLARWRASAGVVGLGAALMAISAGWIVSLLRVADPGAVTGVGSFLVLVGGFFFLASARPMVTNLDRARRYDD 333 + D + +G LG ++ GL+ L T PA+GL G ++ +WR WI +R AD V+GVGSFL ++GG A+A +++ RA+ Y D Sbjct: 581 ITDGVSGEGTRLGIWTLIAGLIGLATTLPASGLFGREEQRQWRXXXXXXXXXXXXXXXXFSWIFVQVRSADSNYVSGVGSFLTMIGGCMLAATALSVLSEFRRAKIYSD 689 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97247.22399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig97247.22399.1 >prot_M-pyrifera_M_contig97247.22399.1 ID=prot_M-pyrifera_M_contig97247.22399.1|Name=mRNA_M-pyrifera_M_contig97247.22399.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp VVVRDAWASDGVGLGWLIVVIGLLALLLTFPAAGLGGADDLARWRASAGVback to top mRNA from alignment at M-pyrifera_M_contig97247:5..337+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig97247.22399.1 ID=mRNA_M-pyrifera_M_contig97247.22399.1|Name=mRNA_M-pyrifera_M_contig97247.22399.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=333bp|location=Sequence derived from alignment at M-pyrifera_M_contig97247:5..337+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig97247:5..337+ >mRNA_M-pyrifera_M_contig97247.22399.1 ID=mRNA_M-pyrifera_M_contig97247.22399.1|Name=mRNA_M-pyrifera_M_contig97247.22399.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig97247:5..337+ (Macrocystis pyrifera P11B4 male)back to top |