mRNA_M-pyrifera_M_contig97247.22399.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97247.22399.1
Unique NamemRNA_M-pyrifera_M_contig97247.22399.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig97247.22399.1 vs. uniprot
Match: A0A355DDS8_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A355DDS8_9ACTN)

HSP 1 Score: 98.6 bits (244), Expect = 6.740e-23
Identity = 52/110 (47.27%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    4 VVRDAWASDGVGLGWLIVVIGLLALLLTFPAAGLGGADDLARWRASAGVVGLGAALMAISAGWIVSLLRVADPGAVTGVGSFLVLVGGFFFLASARPMVTNLDRARRYDD 333
            V+ D    DG GLG L +  G LA L   PA+G+ G+++  RWR SA V GLG  +M +  GW+ SLLRV     VTG G+FL ++GGFF LA+ARP++    R + YDD
Sbjct:  141 VILDGLTEDGGGLGRLALFAGALASLFVLPASGVLGSNEHLRWRWSAVVAGLGFGIMLLGVGWVASLLRVGPRLIVTGAGAFLTILGGFFILATARPLLAEFRRKKVYDD 250          
BLAST of mRNA_M-pyrifera_M_contig97247.22399.1 vs. uniprot
Match: A0A6N9A0G1_9ACTN (ABC transporter permease subunit n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N9A0G1_9ACTN)

HSP 1 Score: 99.8 bits (247), Expect = 4.050e-22
Identity = 52/105 (49.52%), Postives = 70/105 (66.67%), Query Frame = 1
Query:   13 DAWASDGVGLGWLIVVIGLLALLLTFPAAGLGGADDLARWRASAGVVGLGAALMAISAGWIVSLLRVADPGAVTGVGSFLVLVGGFFFLASARPMVTNLDRARRY 327
            D ++  G  LG+L + +G+ ALLLT PAAGL G D+  RWR S GV  +G  +M ++AGWI SL+RV+DP  V+G G+FL LV GF F ASAR ++    R + Y
Sbjct:  595 DGFSGAGPRLGYLTLWLGVAALLLTLPAAGLFGRDEQLRWRWSIGVAAVGVGVMLVAAGWISSLVRVSDPNFVSGPGAFLCLVAGFLFFASARGVLREFQRTKVY 699          
BLAST of mRNA_M-pyrifera_M_contig97247.22399.1 vs. uniprot
Match: A0A2E0T2I4_9ACTN (ABC transmembrane type-1 domain-containing protein n=3 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0T2I4_9ACTN)

HSP 1 Score: 89.4 bits (220), Expect = 1.780e-18
Identity = 45/111 (40.54%), Postives = 66/111 (59.46%), Query Frame = 1
Query:    4 VVRDAWASDGVGLGWLIVVIGLLALLLTFPAAGL-GGADDLARWRASAGVVGLGAALMAISAGWIVSLLRVADPGAVTGVGSFLVLVGGFFFLASARPMVTNLDRARRYDD 333
            ++ D+W   G G+GW  V++ +L+L     A+GL G ++   +WR SA  +GLGAA   +   WI S+ R  DP  + GVGSFLV+V G FF++S R +V    R   +DD
Sbjct:  575 IISDSWTDIGAGMGWPSVILAVLSLGAVLVASGLIGSSEQHRKWRWSAISMGLGAATSVVGLAWIASVTRATDPSYIVGVGSFLVMVAGIFFISSGRALVREFFRTEVFDD 685          
BLAST of mRNA_M-pyrifera_M_contig97247.22399.1 vs. uniprot
Match: A0A358A0V5_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A358A0V5_9ACTN)

HSP 1 Score: 87.8 bits (216), Expect = 5.120e-18
Identity = 44/111 (39.64%), Postives = 66/111 (59.46%), Query Frame = 1
Query:    4 VVRDAWASDGVGLGWLIVVIGLLALLLTFPAAGL-GGADDLARWRASAGVVGLGAALMAISAGWIVSLLRVADPGAVTGVGSFLVLVGGFFFLASARPMVTNLDRARRYDD 333
            ++ D+W   G G+GW  +++ +L+L     A+GL G ++   +WR SA  +GLGAA   +   WI S+ R  DP  + GVGSFLV+V G FF++S R +V    R   +DD
Sbjct:  330 IISDSWTDIGAGMGWPSLILAILSLGAVLVASGLIGSSEQHRKWRWSAISMGLGAATSVVGLAWIASVTRATDPSYIVGVGSFLVMVAGIFFVSSGRGLVREFFRTEVFDD 440          
BLAST of mRNA_M-pyrifera_M_contig97247.22399.1 vs. uniprot
Match: A0A3C1JIN8_9ACTN (ABC transmembrane type-1 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C1JIN8_9ACTN)

HSP 1 Score: 87.8 bits (216), Expect = 6.220e-18
Identity = 48/111 (43.24%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    4 VVRDAWASDGVGLGWLIVVIGLLALLLTFPAAGL--GGADDLARWRASAGVVGLGAALMAISAGWIVSLLRVADPGAVTGVGSFLVLVGGFFFLASARPMVTNLDRARRYD 330
            V+ D +   G GLGW+ +++GL+AL+   PA+GL  G  D L RW    G +GLG  L+A++ GWI S+ RVADP  V+GVGS  VL+GG    +S R  +   +R   Y+
Sbjct:  650 VIFDGFTRQGGGLGWISLILGLIALVCALPASGLFSGEEDYLYRWCTIVGGLGLG--LLALAVGWIASITRVADPNLVSGVGSLFVLLGGLSIASSVRQTLAEFNRKEVYE 758          
BLAST of mRNA_M-pyrifera_M_contig97247.22399.1 vs. uniprot
Match: A0A6L7NFZ1_9ACTN (ABC transporter permease subunit n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6L7NFZ1_9ACTN)

HSP 1 Score: 82.8 bits (203), Expect = 3.520e-16
Identity = 45/105 (42.86%), Postives = 63/105 (60.00%), Query Frame = 1
Query:   13 DAWASDGVGLGWLIVVIGLLALLLTFPAAGLGGADDLARWRASAGVVGLGAALMAISAGWIVSLLRVADPGAVTGVGSFLVLVGGFFFLASARPMVTNLDRARRY 327
            + +   G GLG+L + +G+  L+LT PAAGL   D+  R      V  LGA    ++AGWI SL+RV+DPG V+G G+FL L+GG F   S+R ++    R R Y
Sbjct:  576 NGFEEAGPGLGYLALGLGVAGLVLTLPAAGLFAGDERWRXXXXVAVSALGAGTTLVAAGWIASLVRVSDPGFVSGPGAFLCLLGGLFLFISSRRVLREFRRTRVY 680          
BLAST of mRNA_M-pyrifera_M_contig97247.22399.1 vs. uniprot
Match: A0A3D0TR87_9ACTN (ABC transmembrane type-1 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3D0TR87_9ACTN)

HSP 1 Score: 82.0 bits (201), Expect = 6.640e-16
Identity = 44/110 (40.00%), Postives = 70/110 (63.64%), Query Frame = 1
Query:    4 VVRDAWASDGVGLGWLIVVIGLLALLLTFPAAGLGGADDLARWRASAGVVGLGAALMAISAGWIVSLLRVADPGAVTGVGSFLVLVGGFFFLASARPMVTNLDRARRYDD 333
            VV D + S+G GLG   +++GL+AL L  PAAG+ G ++   +R SA V GLG  L  I  GWI+SL+R AD   V+G+G+ LVL+ G    ++ +  +++ +R ++Y +
Sbjct:  699 VVWDGFTSEGAGLGLWSLLLGLVALALVLPAAGVFGIEESRLYRWSAPVGGLGLGLAVIGGGWIMSLVRTADTNFVSGMGAVLVLLAGVVVFSTVKSTLSDFERNKQYQE 808          
BLAST of mRNA_M-pyrifera_M_contig97247.22399.1 vs. uniprot
Match: A0A351ER17_9ACTN (ABC transmembrane type-1 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351ER17_9ACTN)

HSP 1 Score: 80.9 bits (198), Expect = 1.680e-15
Identity = 44/108 (40.74%), Postives = 60/108 (55.56%), Query Frame = 1
Query:   10 RDAWASDGVGLGWLIVVIGLLALLLTFPAAGLGGADDLARWRASAGVVGLGAALMAISAGWIVSLLRVADPGAVTGVGSFLVLVGGFFFLASARPMVTNLDRARRYDD 333
            R    SDG GLG+ ++ +G+L  + +   AGL GA + ARW+ +    GLG A + I A WI S  R  +P A+TG GSF  LVGG    A+ R +V    R + Y D
Sbjct:  647 RTGLDSDGPGLGYPMIALGVLGAISSLFGAGLFGAGEQARWKGATITAGLGLANIVIPASWIFSFTRSGEPKAITGAGSFFALVGGVILFAAGRGVVNEFRRRKVYAD 754          
BLAST of mRNA_M-pyrifera_M_contig97247.22399.1 vs. uniprot
Match: A0A7K2AIW5_9ACTN (ABC transporter permease subunit n=2 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2AIW5_9ACTN)

HSP 1 Score: 78.6 bits (192), Expect = 1.080e-14
Identity = 41/106 (38.68%), Postives = 61/106 (57.55%), Query Frame = 1
Query:   13 DAWASDGVGLGWLIVVIGLLALLLTFPAAGLGGADDLARWRASAGVVGLGAALMAISAGWIVSLLRVADPGAVTGVGSFLVLVGGFFFLASARPMVTNLDRARRYD 330
            D +   G GLG L + +G++  L + PAAG+ G  +  RW  S  V  +G  ++  S GWI SL+R +D G V+G GSFL L+ GFF   S+R ++    R+  Y+
Sbjct:  585 DGFEEKGPGLGRLALWLGVVGALFSLPAAGVFGGGERRRWMWSVAVSAIGVGVLLASGGWIASLVRASDAGFVSGFGSFLCLLAGFFLFISSRGVLKEFRRSMVYE 690          
BLAST of mRNA_M-pyrifera_M_contig97247.22399.1 vs. uniprot
Match: A0A6B1AY66_9ACTN (ABC transporter permease subunit n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1AY66_9ACTN)

HSP 1 Score: 61.2 bits (147), Expect = 1.290e-8
Identity = 35/109 (32.11%), Postives = 54/109 (49.54%), Query Frame = 1
Query:    7 VRDAWASDGVGLGWLIVVIGLLALLLTFPAAGLGGADDLARWRASAGVVGLGAALMAISAGWIVSLLRVADPGAVTGVGSFLVLVGGFFFLASARPMVTNLDRARRYDD 333
            + D  + +G  LG   ++ GL+ L  T PA+GL G ++  +WR                  WI   +R AD   V+GVGSFL ++GG    A+A  +++   RA+ Y D
Sbjct:  581 ITDGVSGEGTRLGIWTLIAGLIGLATTLPASGLFGREEQRQWRXXXXXXXXXXXXXXXXFSWIFVQVRSADSNYVSGVGSFLTMIGGCMLAATALSVLSEFRRAKIYSD 689          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97247.22399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A355DDS8_9ACTN6.740e-2347.27Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A6N9A0G1_9ACTN4.050e-2249.52ABC transporter permease subunit n=1 Tax=Acidimicr... [more]
A0A2E0T2I4_9ACTN1.780e-1840.54ABC transmembrane type-1 domain-containing protein... [more]
A0A358A0V5_9ACTN5.120e-1839.64Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A3C1JIN8_9ACTN6.220e-1843.24ABC transmembrane type-1 domain-containing protein... [more]
A0A6L7NFZ1_9ACTN3.520e-1642.86ABC transporter permease subunit n=1 Tax=Acidimicr... [more]
A0A3D0TR87_9ACTN6.640e-1640.00ABC transmembrane type-1 domain-containing protein... [more]
A0A351ER17_9ACTN1.680e-1540.74ABC transmembrane type-1 domain-containing protein... [more]
A0A7K2AIW5_9ACTN1.080e-1438.68ABC transporter permease subunit n=2 Tax=Acidimicr... [more]
A0A6B1AY66_9ACTN1.290e-832.11ABC transporter permease subunit n=1 Tax=Acidimicr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97247contigM-pyrifera_M_contig97247:5..337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816889.0445323-CDS-M-pyrifera_M_contig97247:4..3371622816889.0445323-CDS-M-pyrifera_M_contig97247:4..337Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97247 5..337 +
1692278238.1488688-CDS-M-pyrifera_M_contig97247:4..3371692278238.1488688-CDS-M-pyrifera_M_contig97247:4..337Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97247 5..337 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97247.22399.1prot_M-pyrifera_M_contig97247.22399.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97247 5..337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97247.22399.1

>prot_M-pyrifera_M_contig97247.22399.1 ID=prot_M-pyrifera_M_contig97247.22399.1|Name=mRNA_M-pyrifera_M_contig97247.22399.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
VVVRDAWASDGVGLGWLIVVIGLLALLLTFPAAGLGGADDLARWRASAGV
VGLGAALMAISAGWIVSLLRVADPGAVTGVGSFLVLVGGFFFLASARPMV
TNLDRARRYDD
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mRNA from alignment at M-pyrifera_M_contig97247:5..337+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97247.22399.1 ID=mRNA_M-pyrifera_M_contig97247.22399.1|Name=mRNA_M-pyrifera_M_contig97247.22399.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=333bp|location=Sequence derived from alignment at M-pyrifera_M_contig97247:5..337+ (Macrocystis pyrifera P11B4 male)
GTCGTCGTCCGCGACGCCTGGGCGAGCGATGGCGTGGGCCTCGGGTGGCT GATAGTCGTCATCGGGCTGCTCGCCCTCCTGCTCACCTTCCCGGCCGCCG GCCTCGGTGGCGCCGATGATCTCGCTCGCTGGCGTGCGAGTGCCGGCGTC GTCGGTCTGGGCGCCGCGCTCATGGCGATCAGCGCGGGCTGGATCGTGAG TCTGTTGCGCGTCGCCGATCCGGGCGCCGTGACCGGGGTCGGCTCGTTCC TGGTGCTCGTCGGCGGATTCTTCTTCCTTGCCTCGGCCCGACCGATGGTG ACGAACCTCGATCGCGCCCGGCGCTACGACGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig97247:5..337+

>mRNA_M-pyrifera_M_contig97247.22399.1 ID=mRNA_M-pyrifera_M_contig97247.22399.1|Name=mRNA_M-pyrifera_M_contig97247.22399.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig97247:5..337+ (Macrocystis pyrifera P11B4 male)
GTCGTCGTCCGCGACGCCTGGGCGAGCGATGGCGTGGGCCTCGGGTGGCT
GATAGTCGTCATCGGGCTGCTCGCCCTCCTGCTCACCTTCCCGGCCGCCG
GCCTCGGTGGCGCCGATGATCTCGCTCGCTGGCGTGCGAGTGCCGGCGTC
GTCGGTCTGGGCGCCGCGCTCATGGCGATCAGCGCGGGCTGGATCGTGAG
TCTGTTGCGCGTCGCCGATCCGGGCGCCGTGACCGGGGTCGGCTCGTTCC
TGGTGCTCGTCGGCGGATTCTTCTTCCTTGCCTCGGCCCGACCGATGGTG
ACGAACCTCGATCGCGCCCGGCGCTACGACGACGTCGTCGTCCGCGACGC
CTGGGCGAGCGATGGCGTGGGCCTCGGGTGGCTGATAGTCGTCATCGGGC
TGCTCGCCCTCCTGCTCACCTTCCCGGCCGCCGGCCTCGGTGGCGCCGAT
GATCTCGCTCGCTGGCGTGCGAGTGCCGGCGTCGTCGGTCTGGGCGCCGC
GCTCATGGCGATCAGCGCGGGCTGGATCGTGAGTCTGTTGCGCGTCGCCG
ATCCGGGCGCCGTGACCGGGGTCGGCTCGTTCCTGGTGCTCGTCGGCGGA
TTCTTCTTCCTTGCCTCGGCCCGACCGATGGTGACGAACCTCGATCGCGC
CCGGCGCTACGACGAC
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