mRNA_M-pyrifera_M_contig9719.22385.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9719.22385.1
Unique NamemRNA_M-pyrifera_M_contig9719.22385.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9719.22385.1 vs. uniprot
Match: D8LNY7_ECTSI (Fructose-bisphosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNY7_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 1.700e-27
Identity = 53/62 (85.48%), Postives = 60/62 (96.77%), Query Frame = 3 
Query:    3 GNPMGWVVEQAGGKASTGAGAMLDQQPSEIHERIPTFLGSVEDVLELESYGDIQQLGDKKYA 188
            GNPMGWVVEQAGG+ASTGA AMLD++PS+IHERIPTFLGS ED+LELESYGD+QQLG+KKYA
Sbjct:  336 GNPMGWVVEQAGGRASTGAAAMLDKEPSDIHERIPTFLGSEEDILELESYGDVQQLGNKKYA 397
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BLAST of mRNA_M-pyrifera_M_contig9719.22385.1 vs. uniprot
Match: A0A835Z219_9STRA (Fructose-bisphosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z219_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 3.080e-18
Identity = 43/67 (64.18%), Postives = 54/67 (80.60%), Query Frame = 3 
Query:    3 GNPMGWVVEQAGGKASTGAGAMLDQQPSEIHERIPTFLGSVEDVLELESYG----DIQQLGDKKYAV 191
            GNPMG+VVEQAGGKASTG G +L++ P ++H+RIPTFLGS  D+ ELESYG     +QQLG+K YA+
Sbjct:  302 GNPMGFVVEQAGGKASTGVGPILEEVPQDVHQRIPTFLGSAGDIEELESYGREHGGVQQLGNKTYAI 368
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BLAST of mRNA_M-pyrifera_M_contig9719.22385.1 vs. uniprot
Match: A0A388K5P9_CHABU (Fructose-bisphosphatase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K5P9_CHABU)

HSP 1 Score: 82.0 bits (201), Expect = 4.250e-15
Identity = 38/62 (61.29%), Postives = 50/62 (80.65%), Query Frame = 3 
Query:    6 NPMGWVVEQAGGKASTGAGAMLDQQPSEIHERIPTFLGSVEDVLELESYGDIQQLGDKKYAV 191
            NPMG++VEQAGGKAS G   ++D +PS++HER+P FLGS +DV ELESYGD+QQ+ +  Y V
Sbjct:  458 NPMGFIVEQAGGKASDGKRRIVDIKPSKLHERLPLFLGSFDDVHELESYGDVQQVVNPGYQV 519
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BLAST of mRNA_M-pyrifera_M_contig9719.22385.1 vs. uniprot
Match: D8S215_SELML (Fructose-bisphosphatase n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S215_SELML)

HSP 1 Score: 80.9 bits (198), Expect = 5.350e-15
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 3 
Query:    3 GNPMGWVVEQAGGKASTGAGAMLDQQPSEIHERIPTFLGSVEDVLELESYGDIQQLGDKKYAV 191
            GNP+G++VE AGGKA  G   +LD QP E+H+R+P FLGS EDVLELE+YGD+QQ+ +  Y V
Sbjct:  271 GNPLGFLVEDAGGKACDGKRRILDIQPVELHQRLPLFLGSSEDVLELETYGDVQQVVNPGYEV 333
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BLAST of mRNA_M-pyrifera_M_contig9719.22385.1 vs. uniprot
Match: A0A8J9S222_9CHLO (Fructose-1,6-bisphosphatase, chloroplastic n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S222_9CHLO)

HSP 1 Score: 80.9 bits (198), Expect = 5.910e-15
Identity = 35/62 (56.45%), Postives = 49/62 (79.03%), Query Frame = 3 
Query:    6 NPMGWVVEQAGGKASTGAGAMLDQQPSEIHERIPTFLGSVEDVLELESYGDIQQLGDKKYAV 191
            NP+G++ EQAGGKAS G   +LD QP ++H+R+P FLGS +D++ELESYGD+QQ+ +  Y V
Sbjct:  284 NPLGFLAEQAGGKASDGKRRILDIQPEKLHQRLPLFLGSPDDIMELESYGDVQQIHNPGYTV 345
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BLAST of mRNA_M-pyrifera_M_contig9719.22385.1 vs. uniprot
Match: A0A7R9VD90_9CHLO (Fructose-bisphosphatase n=2 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VD90_9CHLO)

HSP 1 Score: 80.1 bits (196), Expect = 1.090e-14
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 3 
Query:    6 NPMGWVVEQAGGKASTGAGAMLDQQPSEIHERIPTFLGSVEDVLELESYGDIQQLGDKKYAV 191
            NP+ ++ EQAGGK S G   +LD QP+ +H+R+P FLGS  D+ ELESYG++QQLG KKY V
Sbjct:  280 NPLAFLAEQAGGKGSNGISRILDIQPARLHQRVPLFLGSRLDIEELESYGNVQQLGSKKYDV 341
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BLAST of mRNA_M-pyrifera_M_contig9719.22385.1 vs. uniprot
Match: A0A565CW76_9BRAS (Fructose-bisphosphatase n=5 Tax=Brassicaceae TaxID=3700 RepID=A0A565CW76_9BRAS)

HSP 1 Score: 79.3 bits (194), Expect = 2.980e-14
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 3 
Query:    3 GNPMGWVVEQAGGKASTGAGAMLDQQPSEIHERIPTFLGSVEDVLELESYGDIQQLGDKKYAV 191
            GNP+ ++VEQAGGKAS G   +L  QP ++H+R+P FLGSVEDV ELESYGD+QQ  +  Y V
Sbjct:  344 GNPLAFLVEQAGGKASDGKREILSIQPVKLHQRLPLFLGSVEDVTELESYGDVQQTVNPGYEV 406
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BLAST of mRNA_M-pyrifera_M_contig9719.22385.1 vs. uniprot
Match: UPI00053971ED (fructose-1,6-bisphosphatase, cytosolic n=2 Tax=Camelina sativa TaxID=90675 RepID=UPI00053971ED)

HSP 1 Score: 78.6 bits (192), Expect = 5.500e-14
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = 3 
Query:    3 GNPMGWVVEQAGGKASTGAGAMLDQQPSEIHERIPTFLGSVEDVLELESYGDIQQLGDKKYAV 191
            GNP+ ++VEQAGGK+S G   +L  QP ++H+R+P FLGSVEDV ELESYGD+QQ  +  Y V
Sbjct:  340 GNPLAFLVEQAGGKSSDGKRGILSIQPVKLHQRLPLFLGSVEDVAELESYGDVQQTVNPGYEV 402
[Close]
BLAST of mRNA_M-pyrifera_M_contig9719.22385.1 vs. uniprot
Match: A0A7S0ZK66_9RHOD (Fructose-bisphosphatase n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZK66_9RHOD)

HSP 1 Score: 77.8 bits (190), Expect = 1.050e-13
Identity = 36/62 (58.06%), Postives = 48/62 (77.42%), Query Frame = 3 
Query:    6 NPMGWVVEQAGGKASTGAGAMLDQQPSEIHERIPTFLGSVEDVLELESYGDIQQLGDKKYAV 191
            NP+G+VVE+AGG+ S G   +LD  P+E+H+RIP FLGS ED+ ELE Y D+QQ G +KYA+
Sbjct:  348 NPLGFVVEEAGGRGSDGTDRLLDVIPTELHQRIPVFLGSSEDIHELEQY-DVQQKGSQKYAI 408
[Close]
BLAST of mRNA_M-pyrifera_M_contig9719.22385.1 vs. uniprot
Match: A0A0D2LHX3_9CHLO (D-fructose-1,6-bisphosphate 1-phosphohydrolase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LHX3_9CHLO)

HSP 1 Score: 74.3 bits (181), Expect = 1.290e-13
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 3 
Query:    3 GNPMGWVVEQAGGKASTGAGAMLDQQPSEIHERIPTFLGSVEDVLELESYGDIQQLGDKKYAV 191
            GNP+  + EQAGG+AS G   +L   P  +H+++P FLGS +D+ ELESYGD+QQ G KKY V
Sbjct:  105 GNPLAMLSEQAGGRASDGVRRVLSIAPEALHQKLPLFLGSPDDIAELESYGDVQQGGGKKYDV 167
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9719.22385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNY7_ECTSI1.700e-2785.48Fructose-bisphosphatase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z219_9STRA3.080e-1864.18Fructose-bisphosphatase n=1 Tax=Tribonema minus Ta... [more]
A0A388K5P9_CHABU4.250e-1561.29Fructose-bisphosphatase n=1 Tax=Chara braunii TaxI... [more]
D8S215_SELML5.350e-1560.32Fructose-bisphosphatase n=4 Tax=Selaginella moelle... [more]
A0A8J9S222_9CHLO5.910e-1556.45Fructose-1,6-bisphosphatase, chloroplastic n=1 Tax... [more]
A0A7R9VD90_9CHLO1.090e-1458.06Fructose-bisphosphatase n=2 Tax=Chlamydomonas eury... [more]
A0A565CW76_9BRAS2.980e-1460.32Fructose-bisphosphatase n=5 Tax=Brassicaceae TaxID... [more]
UPI00053971ED5.500e-1458.73fructose-1,6-bisphosphatase, cytosolic n=2 Tax=Cam... [more]
A0A7S0ZK66_9RHOD1.050e-1358.06Fructose-bisphosphatase n=1 Tax=Timspurckia oligop... [more]
A0A0D2LHX3_9CHLO1.290e-1353.97D-fructose-1,6-bisphosphate 1-phosphohydrolase n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9719contigM-pyrifera_M_contig9719:2237..3295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score73.9
Seed ortholog evalue2.8e-11
Seed eggNOG ortholog88036.EFJ21550
KEGG rclassRC00017
KEGG koko:K03841
KEGG ReactionR00762,R04780
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko04152,ko04910,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map04152,map04910
KEGG ModuleM00003,M00165,M00167,M00344
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Belongs to the FBPase class 1 family
EggNOG OGs37IPI@33090,3G9WW@35493,COG0158@1,KOG1458@2759
EC3.1.3.11
COG Functional cat.G
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons2
Model size509
Cds size183
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9719.22385.1prot_M-pyrifera_M_contig9719.22385.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9719 2248..2980 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816888.3678243-UTR-M-pyrifera_M_contig9719:2236..22471622816888.3678243-UTR-M-pyrifera_M_contig9719:2236..2247Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9719 2237..2247 +
1692278237.7154899-UTR-M-pyrifera_M_contig9719:2236..22471692278237.7154899-UTR-M-pyrifera_M_contig9719:2236..2247Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9719 2237..2247 +
1622816888.4076817-UTR-M-pyrifera_M_contig9719:2980..32951622816888.4076817-UTR-M-pyrifera_M_contig9719:2980..3295Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9719 2981..3295 +
1692278237.751459-UTR-M-pyrifera_M_contig9719:2980..32951692278237.751459-UTR-M-pyrifera_M_contig9719:2980..3295Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9719 2981..3295 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816888.3807719-CDS-M-pyrifera_M_contig9719:2247..23161622816888.3807719-CDS-M-pyrifera_M_contig9719:2247..2316Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9719 2248..2316 +
1692278237.7282555-CDS-M-pyrifera_M_contig9719:2247..23161692278237.7282555-CDS-M-pyrifera_M_contig9719:2247..2316Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9719 2248..2316 +
1622816888.3932438-CDS-M-pyrifera_M_contig9719:2866..29801622816888.3932438-CDS-M-pyrifera_M_contig9719:2866..2980Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9719 2867..2980 +
1692278237.739216-CDS-M-pyrifera_M_contig9719:2866..29801692278237.739216-CDS-M-pyrifera_M_contig9719:2866..2980Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9719 2867..2980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9719.22385.1

>prot_M-pyrifera_M_contig9719.22385.1 ID=prot_M-pyrifera_M_contig9719.22385.1|Name=mRNA_M-pyrifera_M_contig9719.22385.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
MGWVVEQAGGKASTGAGAMLDQQPSEIHERIPTFLGSVEDVLELESYGDI
QQLGDKKYAV*
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mRNA from alignment at M-pyrifera_M_contig9719:2237..3295+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9719.22385.1 ID=mRNA_M-pyrifera_M_contig9719.22385.1|Name=mRNA_M-pyrifera_M_contig9719.22385.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1059bp|location=Sequence derived from alignment at M-pyrifera_M_contig9719:2237..3295+ (Macrocystis pyrifera P11B4 male)
AGGGGAACCCAATGGGATGGGTGGTGGAACAGGCGGGGGGCAAAGCCTCT
ACCGGCGCGGGGGCAATGCTGGATCAACAGGTCGGTGTTTTCTGTGGCTT
ATTTGATTATGCCCAATACCATGAAAGCGCGATTATACTACAACGCCGAG
AGCGGCGGAAGCGCCAAACCGCCGGAGCTGGATACCACTGTAGCTCGATG
AGCCCGGGTCAAATCAATGTGGCACGCTGACCTATGAATGTCGTTAGTCT
ATTTCGTTGTTGGGGTGCTCCTGGGTATATCGTACGATTCCCCGGCATTT
AACATTCCTCTGGAGACAAACTGGAGGCTAGCACGACTCCTGGTCCCAAT
GCTTCCCAGCGCTCCGCACCAGTGCAAGCAGCAAATACTAGCCGCATTTA
GCAATCGAGGTACATCGCCAACCGTAGATCATCTCCATTTGCGCAGGTAC
ATACTGCGTTATGATAAAAAGACAGTACAGGAGGAACCGGGAGACCAGAA
TAATGCACTCGTTCGTCTATGATGGTTGTACAAACACTCACCAATCTATC
GCGCGCACCACTCCTCCCTGTATCCATACTCATCCACATGTATCGGTATG
CTCTCGATCATGTTTGTTCGTTCTCGGCAGCCGTCCGAGATTCATGAGCG
CATCCCGACGTTCTTAGGATCCGTGGAGGATGTGTTGGAGCTTGAGAGCT
ACGGAGACATCCAGCAACTCGGTGACAAGAAGTACGCCGTCTAGTCTCTC
TCGAGGTTTCCAGGTGTTCTCCAATGGTCGCTGATCAGATGTACCAGTAC
GGGCTTATCTCTCTCCCCGGAGCAGAGAGAGAAGGAAGTAGTTCGACGTT
GAGTTGATCTACGGTACACAAGTGGCTAGCTGAGCCCGGGTGGAATGTTC
GACTCGAGCTGTCAGCTGTCGTAAGAACTTCGGCAAGCGCTTGCCGTGCG
GCTACGGCCTCGGTTTTCACACATGCAACGGGCTGCGAGGGATTTTATTG
CTTTCAATTGTTTTAACCAATATGAAAACTGCGGGCAGGAAACCAGGGTT
CGCTGGGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9719:2237..3295+

>mRNA_M-pyrifera_M_contig9719.22385.1 ID=mRNA_M-pyrifera_M_contig9719.22385.1|Name=mRNA_M-pyrifera_M_contig9719.22385.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig9719:2237..3295+ (Macrocystis pyrifera P11B4 male)
ATGGGATGGGTGGTGGAACAGGCGGGGGGCAAAGCCTCTACCGGCGCGGG
GGCAATGCTGGATCAACAGATGGGATGGGTGGTGGAACAGGCGGGGGGCA
AAGCCTCTACCGGCGCGGGGGCAATGCTGGATCAACAGCCGTCCGAGATT
CATGAGCGCATCCCGACGTTCTTAGGATCCGTGGAGGATGTGTTGGAGCT
TGAGAGCTACGGAGACATCCAGCAACTCGGTGACAAGAAGTACGCCGTCT
AGCCGTCCGAGATTCATGAGCGCATCCCGACGTTCTTAGGATCCGTGGAG
GATGTGTTGGAGCTTGAGAGCTACGGAGACATCCAGCAACTCGGTGACAA
GAAGTACGCCGTCTAG
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