mRNA_M-pyrifera_M_contig9719.22384.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9719.22384.1
Unique NamemRNA_M-pyrifera_M_contig9719.22384.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig9719.22384.1 vs. uniprot
Match: D8LNY7_ECTSI (Fructose-bisphosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNY7_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 1.180e-43
Identity = 72/85 (84.71%), Postives = 78/85 (91.76%), Query Frame = 1
Query:    4 LGEFVLKARSIKMPKRGRSYSLNEAREPDWPEGLRRYISDAKNGAGVSGEKFDLVYVCSLVADVHYTLFEGGIAMNPRSHLRLVY 258
            LGEFVL   SIKMP RGRSYSLNEAREPDWP+GL++YISD K GAG SGE++DLVYVCSLVADVHYTLFEGG+AMNPRSHLRLVY
Sbjct:  250 LGEFVLTKHSIKMPARGRSYSLNEAREPDWPDGLKQYISDMKTGAGQSGERYDLVYVCSLVADVHYTLFEGGVAMNPRSHLRLVY 334          
BLAST of mRNA_M-pyrifera_M_contig9719.22384.1 vs. uniprot
Match: A0A835Z219_9STRA (Fructose-bisphosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z219_9STRA)

HSP 1 Score: 130 bits (328), Expect = 6.900e-35
Identity = 59/84 (70.24%), Postives = 69/84 (82.14%), Query Frame = 1
Query:    7 GEFVLKARSIKMPKRGRSYSLNEAREPDWPEGLRRYISDAKNGAGVSGEKFDLVYVCSLVADVHYTLFEGGIAMNPRSHLRLVY 258
            GEFVL   SI++P RGRSYSLNEARE DWP GLRRYI D K G G +GE+++LVY+CSLVADVH+ +  GG+A NPRSHLRLVY
Sbjct:  217 GEFVLTRASIRIPPRGRSYSLNEAREGDWPPGLRRYIGDVKRGRGATGERYELVYICSLVADVHHVMLHGGLASNPRSHLRLVY 300          
BLAST of mRNA_M-pyrifera_M_contig9719.22384.1 vs. uniprot
Match: A0A7S0BME6_9RHOD (Fructose-bisphosphatase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BME6_9RHOD)

HSP 1 Score: 122 bits (305), Expect = 1.410e-31
Identity = 55/84 (65.48%), Postives = 68/84 (80.95%), Query Frame = 1
Query:    7 GEFVLKARSIKMPKRGRSYSLNEAREPDWPEGLRRYISDAKNGAGVSGEKFDLVYVCSLVADVHYTLFEGGIAMNPRSHLRLVY 258
            G+FVL   +IK+P+ G SYS+N+ R  DWP+GL+RYI+D KNG G +G K+D  Y+CSLVADVHY LF GGIAMNPR+HLRLVY
Sbjct:  208 GDFVLTHPNIKVPQSGSSYSVNDGRFHDWPKGLQRYITDIKNGRGRTGRKYDTKYICSLVADVHYVLFRGGIAMNPRAHLRLVY 291          
BLAST of mRNA_M-pyrifera_M_contig9719.22384.1 vs. uniprot
Match: S8D388_9LAMI (Fructose-bisphosphatase (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8D388_9LAMI)

HSP 1 Score: 111 bits (278), Expect = 2.330e-28
Identity = 51/86 (59.30%), Postives = 63/86 (73.26%), Query Frame = 1
Query:    1 SLGEFVLKARSIKMPKRGRSYSLNEAREPDWPEGLRRYISDAKNGAGVSGEKFDLVYVCSLVADVHYTLFEGGIAMNPRSHLRLVY 258
            S G+F+L   SI +P+RGR YS+N+AR  DWPEGLRRY+ D + G G +  K+   Y+CSLVAD H TL  GG+AMNPR HLRLVY
Sbjct:  116 STGDFILTHPSIAVPRRGRIYSVNDARYFDWPEGLRRYVDDVRQGKGRNPNKYSARYICSLVADFHRTLLYGGVAMNPRDHLRLVY 201          
BLAST of mRNA_M-pyrifera_M_contig9719.22384.1 vs. uniprot
Match: A0A7S0HIA1_9EUKA (Fructose-bisphosphatase n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HIA1_9EUKA)

HSP 1 Score: 112 bits (280), Expect = 3.460e-28
Identity = 54/83 (65.06%), Postives = 62/83 (74.70%), Query Frame = 1
Query:   10 EFVLKARSIKMPKRGRSYSLNEAREPDWPEGLRRYISDAKNGAGVSGEKFDLVYVCSLVADVHYTLFEGGIAMNPRSHLRLVY 258
            +FVL   ++K P RG  YSLN+AREPDWPEGLRR++SDAK G   SG KF   YVC+LVADVH TL  GG A NPR HLRL+Y
Sbjct:  171 DFVLSRPALKCPSRGPYYSLNDAREPDWPEGLRRWVSDAKRGEVPSGTKFSSRYVCALVADVHRTLIRGGWAGNPRPHLRLLY 253          
BLAST of mRNA_M-pyrifera_M_contig9719.22384.1 vs. uniprot
Match: A0A8J9S222_9CHLO (Fructose-1,6-bisphosphatase, chloroplastic n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S222_9CHLO)

HSP 1 Score: 112 bits (279), Expect = 7.400e-28
Identity = 51/86 (59.30%), Postives = 66/86 (76.74%), Query Frame = 1
Query:    1 SLGEFVLKARSIKMPKRGRSYSLNEAREPDWPEGLRRYISDAKNGAGVSGEKFDLVYVCSLVADVHYTLFEGGIAMNPRSHLRLVY 258
            +LG+FVL    IK+P+RG+ YS+N+AR  DWPEGLRRYI D + G G + +++   Y+CSLVAD H TL  GG+AMNPRSHLRL+Y
Sbjct:  196 TLGDFVLTHPDIKIPQRGQIYSVNDARYFDWPEGLRRYIDDIRQGKGQNPKQYSARYICSLVADFHRTLLYGGVAMNPRSHLRLIY 281          
BLAST of mRNA_M-pyrifera_M_contig9719.22384.1 vs. uniprot
Match: A0A6V2Q3N8_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A6V2Q3N8_EMIHU)

HSP 1 Score: 106 bits (264), Expect = 8.970e-28
Identity = 51/84 (60.71%), Postives = 60/84 (71.43%), Query Frame = 1
Query:    7 GEFVLKARSIKMPKRGRSYSLNEAREPDWPEGLRRYISDAKNGAGVSGEKFDLVYVCSLVADVHYTLFEGGIAMNPRSHLRLVY 258
            G FVL   S++ P RG  YSLN+AREPDWP+GLRR++ DA+ G   S  KF   YVC+LVADVH TL  GG A NPR HLRL+Y
Sbjct:   21 GRFVLTRPSLRCPARGPYYSLNDAREPDWPQGLRRWVHDARRGLTPSRTKFSSRYVCALVADVHRTLLRGGWAGNPRPHLRLLY 104          
BLAST of mRNA_M-pyrifera_M_contig9719.22384.1 vs. uniprot
Match: D8S215_SELML (Fructose-bisphosphatase n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S215_SELML)

HSP 1 Score: 111 bits (277), Expect = 1.190e-27
Identity = 53/86 (61.63%), Postives = 64/86 (74.42%), Query Frame = 1
Query:    1 SLGEFVLKARSIKMPKRGRSYSLNEAREPDWPEGLRRYISDAKNGAGVSGEKFDLVYVCSLVADVHYTLFEGGIAMNPRSHLRLVY 258
            S GEF L    +K+P+RG+ YS+N+AR  DWP+GLRRYI D + G G   +K+   YVCSLVADVH T+  GGIAMNPRSHLRLVY
Sbjct:  184 SCGEFKLVKPDVKVPERGQIYSVNDARYFDWPQGLRRYIDDIRRGKGQFPKKYSARYVCSLVADVHRTILYGGIAMNPRSHLRLVY 269          
BLAST of mRNA_M-pyrifera_M_contig9719.22384.1 vs. uniprot
Match: A0A7J7N0I9_9MAGN (Fructose-bisphosphatase n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7N0I9_9MAGN)

HSP 1 Score: 108 bits (271), Expect = 1.220e-27
Identity = 51/84 (60.71%), Postives = 62/84 (73.81%), Query Frame = 1
Query:    7 GEFVLKARSIKMPKRGRSYSLNEAREPDWPEGLRRYISDAKNGAGVSGEKFDLVYVCSLVADVHYTLFEGGIAMNPRSHLRLVY 258
            G+FVL   SIK+P RG+ YS+N+AR  DWPEGLRRYI   + G G + +K+   Y+CSLVAD H TL  GG+AMNPR HLRLVY
Sbjct:   84 GDFVLTHPSIKVPPRGQIYSVNDARYFDWPEGLRRYIDTIRQGKGRNSKKYSARYICSLVADFHRTLMYGGVAMNPRDHLRLVY 167          
BLAST of mRNA_M-pyrifera_M_contig9719.22384.1 vs. uniprot
Match: A0A833R0W8_9POAL (Fructose-bisphosphatase n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833R0W8_9POAL)

HSP 1 Score: 112 bits (280), Expect = 1.240e-27
Identity = 52/86 (60.47%), Postives = 65/86 (75.58%), Query Frame = 1
Query:    1 SLGEFVLKARSIKMPKRGRSYSLNEAREPDWPEGLRRYISDAKNGAGVSGEKFDLVYVCSLVADVHYTLFEGGIAMNPRSHLRLVY 258
            ++GEFVL    IK+P RG+ YS+N+AR  DWPEGLR+YI   + G G +G+K+   Y+CSLVAD+H TL  GGIAMNPR HLRLVY
Sbjct:  257 TIGEFVLTHPDIKVPPRGQIYSVNDARYFDWPEGLRQYIDTVRQGKGQTGKKYSARYICSLVADLHRTLLYGGIAMNPRDHLRLVY 342          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9719.22384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNY7_ECTSI1.180e-4384.71Fructose-bisphosphatase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z219_9STRA6.900e-3570.24Fructose-bisphosphatase n=1 Tax=Tribonema minus Ta... [more]
A0A7S0BME6_9RHOD1.410e-3165.48Fructose-bisphosphatase n=1 Tax=Rhodosorus marinus... [more]
S8D388_9LAMI2.330e-2859.30Fructose-bisphosphatase (Fragment) n=1 Tax=Genlise... [more]
A0A7S0HIA1_9EUKA3.460e-2865.06Fructose-bisphosphatase n=1 Tax=Phaeocystis antarc... [more]
A0A8J9S222_9CHLO7.400e-2859.30Fructose-1,6-bisphosphatase, chloroplastic n=1 Tax... [more]
A0A6V2Q3N8_EMIHU8.970e-2860.71Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
D8S215_SELML1.190e-2761.63Fructose-bisphosphatase n=4 Tax=Selaginella moelle... [more]
A0A7J7N0I9_9MAGN1.220e-2760.71Fructose-bisphosphatase n=1 Tax=Kingdonia uniflora... [more]
A0A833R0W8_9POAL1.240e-2760.47Fructose-bisphosphatase n=1 Tax=Carex littledalei ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9719contigM-pyrifera_M_contig9719:993..2236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score111.7
Seed ortholog evalue1.7e-22
Seed eggNOG ortholog50452.A0A087GE28
KEGG rclassRC00017
KEGG koko:K03841
KEGG ReactionR00762,R04780
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko04152,ko04910,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map04152,map04910
KEGG ModuleM00003,M00165,M00167,M00344
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Belongs to the FBPase class 1 family
EggNOG OGs37IPI@33090,3G9WW@35493,3HRJR@3699,COG0158@1,KOG1458@2759
EC3.1.3.11
COG Functional cat.G
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons3
Model size260
Cds size258
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9719.22384.1prot_M-pyrifera_M_contig9719.22384.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9719 993..2235 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816888.3068032-CDS-M-pyrifera_M_contig9719:992..10441622816888.3068032-CDS-M-pyrifera_M_contig9719:992..1044Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9719 993..1044 +
1692278237.6808777-CDS-M-pyrifera_M_contig9719:992..10441692278237.6808777-CDS-M-pyrifera_M_contig9719:992..1044Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9719 993..1044 +
1622816888.3232186-CDS-M-pyrifera_M_contig9719:1331..15151622816888.3232186-CDS-M-pyrifera_M_contig9719:1331..1515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9719 1332..1515 +
1692278237.692641-CDS-M-pyrifera_M_contig9719:1331..15151692278237.692641-CDS-M-pyrifera_M_contig9719:1331..1515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9719 1332..1515 +
1622816888.3349917-CDS-M-pyrifera_M_contig9719:2213..22351622816888.3349917-CDS-M-pyrifera_M_contig9719:2213..2235Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9719 2214..2235 +
1692278237.7029297-CDS-M-pyrifera_M_contig9719:2213..22351692278237.7029297-CDS-M-pyrifera_M_contig9719:2213..2235Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9719 2214..2235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9719.22384.1

>prot_M-pyrifera_M_contig9719.22384.1 ID=prot_M-pyrifera_M_contig9719.22384.1|Name=mRNA_M-pyrifera_M_contig9719.22384.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=86bp
SLGEFVLKARSIKMPKRGRSYSLNEAREPDWPEGLRRYISDAKNGAGVSG
EKFDLVYVCSLVADVHYTLFEGGIAMNPRSHLRLVY
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mRNA from alignment at M-pyrifera_M_contig9719:993..2236+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9719.22384.1 ID=mRNA_M-pyrifera_M_contig9719.22384.1|Name=mRNA_M-pyrifera_M_contig9719.22384.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1244bp|location=Sequence derived from alignment at M-pyrifera_M_contig9719:993..2236+ (Macrocystis pyrifera P11B4 male)
TCGTTAGGGGAGTTCGTGCTCAAAGCGCGGAGCATCAAGATGCCGAAAAG AGGTACTACACGCTGCAACGAAACGCTCCCCGCTACTGTTTCCCTGCCCT TGAATGCCACCACATGTTTTCTCAGAACGTTAGCGATGCGTCCCACGAGG GGTTCTTAGAGTAGAAAGGGAGCTGCACAGTCGACGTGGGTGTTTCGCGT TGTGGTTGTATAACGGAAAACGTTGGGTTATCTCTTGAACAGGATAACCC TTGCCTCTGTCCACTGGATCATAGTTCTCCGATGTAACCCCTCTCCCCTC CCTCTCTTCTCCCGCCATCCCGACGTATCACCCTTGAAGGACGTAGCTAC TCACTAAACGAAGCGCGGGAGCCCGACTGGCCGGAAGGACTTAGGCGGTA CATCTCGGATGCCAAGAACGGCGCGGGGGTAAGCGGAGAGAAGTTCGATC TGGTGTACGTCTGTTCGCTCGTGGCGGACGTCCACTACACGCTGTTCGAG GGGGGGATCGCCATGAACCCAAGGTGACCTCCTGTGCTGTTTTTCCTGCA GATACAGTAGTATTTCCGCGGACAGATAGTTGCTGCGTTTGTGCGACATG GCTCTGTGGACACTACCGCCGCCGTCTGCTCCTTTGTGGGTCGGCAGAGT GCAGCGTGAGCGCGCCGTAAGCATCCGAGTTTGAAGGGTAGACTGCTCGC GCCCGTTCGCATTCACGGCAGCATATATTACGACAGTTAGATGCACTTTC GATAGTAGTAGTAATAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG TAGTAGTAGTAGTAGTATTAGTAGTAGTAGTAGTAGTAGCAGTAGTAGTG GTGATGGTGGTGGCAATACTACCACAGTACTAGCAGTAATGTTGGTAGTA GTGGCAGCAGCAACATAGCAGTAGTATTTGCAGGGGAAATCATGGCAGTA GTGGTAGTAGTGTGGTATTGATGGCAAAACTAGTAGAAGAAGTAGCAGTA GTAGTGGTGGTAGTAACTGTAGTAGTTGGAACAATAACTTGCAACAGGAA AGGAAGCAATAAGCCGGGGAACTGCTTCCGTCAGGCCATGCACCGTAAGG AACCCGTTTGATTTTTTTTCATGCAAGTCATAGCGTGCGACTGGTTCACC GAAAGCAATCTCGATCGCTATGCTTATGCACTCCCTCTTCTTGCCTGACT CACCGTTCACCCATTCAACAGGAGCCATCTAAGGCTAGTCTACG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9719:993..2236+

>mRNA_M-pyrifera_M_contig9719.22384.1 ID=mRNA_M-pyrifera_M_contig9719.22384.1|Name=mRNA_M-pyrifera_M_contig9719.22384.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig9719:993..2236+ (Macrocystis pyrifera P11B4 male)
TCGTTAGGGGAGTTCGTGCTCAAAGCGCGGAGCATCAAGATGCCGAAAAG
AGTCGTTAGGGGAGTTCGTGCTCAAAGCGCGGAGCATCAAGATGCCGAAA
AGAGGACGTAGCTACTCACTAAACGAAGCGCGGGAGCCCGACTGGCCGGA
AGGACTTAGGCGGTACATCTCGGATGCCAAGAACGGCGCGGGGGTAAGCG
GAGAGAAGTTCGATCTGGTGTACGTCTGTTCGCTCGTGGCGGACGTCCAC
TACACGCTGTTCGAGGGGGGGATCGCCATGAACCCAAGGACGTAGCTACT
CACTAAACGAAGCGCGGGAGCCCGACTGGCCGGAAGGACTTAGGCGGTAC
ATCTCGGATGCCAAGAACGGCGCGGGGGTAAGCGGAGAGAAGTTCGATCT
GGTGTACGTCTGTTCGCTCGTGGCGGACGTCCACTACACGCTGTTCGAGG
GGGGGATCGCCATGAACCCAAGGAGCCATCTAAGGCTAGTCTACGAGCCA
TCTAAGGCTAGTCTAC
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