mRNA_M-pyrifera_M_contig9717.22383.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9717.22383.1
Unique NamemRNA_M-pyrifera_M_contig9717.22383.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9717.22383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9717contigM-pyrifera_M_contig9717:1526..2029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size506
Cds size393
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816888.2608583-UTR-M-pyrifera_M_contig9717:1525..16361622816888.2608583-UTR-M-pyrifera_M_contig9717:1525..1636Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9717 1526..1636 +
1692278237.6606257-UTR-M-pyrifera_M_contig9717:1525..16361692278237.6606257-UTR-M-pyrifera_M_contig9717:1525..1636Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9717 1526..1636 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816888.2735517-CDS-M-pyrifera_M_contig9717:1636..20291622816888.2735517-CDS-M-pyrifera_M_contig9717:1636..2029Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9717 1637..2029 +
1692278237.6704934-CDS-M-pyrifera_M_contig9717:1636..20291692278237.6704934-CDS-M-pyrifera_M_contig9717:1636..2029Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9717 1637..2029 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9717.22383.1prot_M-pyrifera_M_contig9717.22383.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9717 1637..2029 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9717.22383.1

>prot_M-pyrifera_M_contig9717.22383.1 ID=prot_M-pyrifera_M_contig9717.22383.1|Name=mRNA_M-pyrifera_M_contig9717.22383.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
MRRDNNPSGVEAPANTSFCPLVFHCQPIKKATQGEGDNKFQLESTKPADP
SAMSFFHGQSSAFESSVKRMPVVLFSVLARHHSSLSALIDERTLWRVCSL
LRFFRCEDALVLVDAGHVDSGVLPGTGGLAS
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mRNA from alignment at M-pyrifera_M_contig9717:1526..2029+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9717.22383.1 ID=mRNA_M-pyrifera_M_contig9717.22383.1|Name=mRNA_M-pyrifera_M_contig9717.22383.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig9717:1526..2029+ (Macrocystis pyrifera P11B4 male)
CCGGTCAGGCAACGCTAACCTAACCGGCACACGCCTTTTCGACAGGGATG
ATAGTGCTTTCACGTCATCGAACACCACCCATGCCATTGCCACCGATCAA
ATTTGTGACATATGAGAAGAGACAATAATCCATCTGGAGTCGAAGCCCCA
GCTAATACTTCTTTTTGCCCTCTCGTTTTTCATTGCCAACCGATCAAAAA
GGCGACACAAGGAGAAGGAGACAATAAATTCCAGCTAGAGTCAACTAAAC
CAGCGGATCCCTCTGCCATGTCGTTCTTCCATGGGCAGTCCTCTGCCTTC
GAGTCGAGTGTCAAACGCATGCCTGTTGTGTTGTTTTCAGTGCTCGCTCG
CCATCATTCATCTCTCTCTGCTTTGATTGACGAGCGCACGCTCTGGCGTG
TTTGTTCCCTGCTGCGTTTTTTTCGTTGCGAAGATGCGCTTGTTCTAGTC
GACGCCGGCCATGTTGACTCCGGCGTCCTGCCCGGCACCGGCGGGCTTGC
CTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9717:1526..2029+

>mRNA_M-pyrifera_M_contig9717.22383.1 ID=mRNA_M-pyrifera_M_contig9717.22383.1|Name=mRNA_M-pyrifera_M_contig9717.22383.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig9717:1526..2029+ (Macrocystis pyrifera P11B4 male)
ATGAGAAGAGACAATAATCCATCTGGAGTCGAAGCCCCAGCTAATACTTC
TTTTTGCCCTCTCGTTTTTCATTGCCAACCGATCAAAAAGGCGACACAAG
GAGAAGGAGACAATAAATTCCAGCTAGAGTCAACTAAACCAGCGGATCCC
TCTGCCATGTCGTTCTTCCATGGGCAGTCCTCTGCCTTCGAGTCGAGTGT
CAAACGCATGCCTGTTGTGTTGTTTTCAGTGCTCGCTCGCCATCATTCAT
CTCTCTCTGCTTTGATTGACGAGCGCACGCTCTGGCGTGTTTGTTCCCTG
CTGCGTTTTTTTCGTTGCGAAGATGCGCTTGTTCTAGTCGACGCCGGCCA
TGTTGACTCCGGCGTCCTGCCCGGCACCGGCGGGCTTGCCTCCATGAGAA
GAGACAATAATCCATCTGGAGTCGAAGCCCCAGCTAATACTTCTTTTTGC
CCTCTCGTTTTTCATTGCCAACCGATCAAAAAGGCGACACAAGGAGAAGG
AGACAATAAATTCCAGCTAGAGTCAACTAAACCAGCGGATCCCTCTGCCA
TGTCGTTCTTCCATGGGCAGTCCTCTGCCTTCGAGTCGAGTGTCAAACGC
ATGCCTGTTGTGTTGTTTTCAGTGCTCGCTCGCCATCATTCATCTCTCTC
TGCTTTGATTGACGAGCGCACGCTCTGGCGTGTTTGTTCCCTGCTGCGTT
TTTTTCGTTGCGAAGATGCGCTTGTTCTAGTCGACGCCGGCCATGTTGAC
TCCGGCGTCCTGCCCGGCACCGGCGGGCTTGCCTCC
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