mRNA_M-pyrifera_M_contig97122.22371.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97122.22371.1
Unique NamemRNA_M-pyrifera_M_contig97122.22371.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig97122.22371.1 vs. uniprot
Match: A0A7S4HMI6_9EUKA (Hypothetical protein n=2 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HMI6_9EUKA)

HSP 1 Score: 132 bits (331), Expect = 3.090e-34
Identity = 62/119 (52.10%), Postives = 81/119 (68.07%), Query Frame = 1
Query:   10 PFYAYSHRKVLVRRRNIKLRAIGTKSGPMTGGIEMNVIGGPFIVGPSLSVCVTTPHGTINLRYGDGALERYSDTVMFFTLPPYPRRANEVFPTQEVLVSVTVTNDGRTHSNAVPFTYQP 366
            PFYAYSH+KVL RR+NI LRA+    G + GG E +++G PFI GP+L   ++TPHG + ++Y DG LERYS+TV+FFTLP YP          ++ V+V VTNDGR  S  +PF Y P
Sbjct:  310 PFYAYSHKKVLTRRKNISLRALSQSYGSVCGGGEYHIVGSPFIKGPALKCVISTPHGKMEMKYSDGTLERYSETVLFFTLPSYPHPDVVTMTEGKIDVTVEVTNDGRHFSAPLPFVYLP 428          
BLAST of mRNA_M-pyrifera_M_contig97122.22371.1 vs. uniprot
Match: L8H608_ACACA (IPT/TIG domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H608_ACACA)

HSP 1 Score: 114 bits (286), Expect = 2.760e-27
Identity = 65/126 (51.59%), Postives = 79/126 (62.70%), Query Frame = 1
Query:    1 RTMPFYAYSHRKVLVRRRNIKLRAIGTKSGPMTGGIEMNVIGGPFIVGPSLSVCVTTPHGTINLRYGDGALERYSDTVMFFTLPPYPRRANEVF------PTQEVLVSVTVTNDGRTHSNAVPFTY 360
            RT  FYAYSH KVL RR+++KLR +    G + GG +M+VIG PFI GPSLS+   TPHG +         E YSD+V+FF  PPYP  A  +F      P +EV V V VTNDGRT SN + FTY
Sbjct:  466 RTSAFYAYSHMKVLARRKSVKLRTLNKSHGSVHGGDKMHVIGQPFIKGPSLSIIFATPHGDVTALNP----EMYSDSVLFFEAPPYPCPA--IFSPYNRDPVREVKVMVQVTNDGRTMSNPLEFTY 585          
BLAST of mRNA_M-pyrifera_M_contig97122.22371.1 vs. uniprot
Match: A0A2P6N756_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N756_9EUKA)

HSP 1 Score: 109 bits (272), Expect = 3.500e-26
Identity = 61/123 (49.59%), Postives = 80/123 (65.04%), Query Frame = 1
Query:    1 RTMPFYAYSHRKVLVRRRNIKLRAIGTKSGPMTGGIEMNVIGGPFIVGPSLSVCVTTPHGTINLRYGDGALERYSDTVMFFTLPPYPRRANEVFPTQ-EVLVSVTVTNDGRTHSNAVPFTYQP 366
            RT PFYAYSH+KVL RR ++KLR +    G ++G  +M+VIGGPFI GP+L++ + TP+G +  R     LE YSD+V+FF LP  P     V   Q EV   V +TNDGRT SN + F+Y P
Sbjct:  227 RTRPFYAYSHKKVLQRRGSVKLRTLSKPWGRLSGREQMHVIGGPFIQGPALALIIRTPYGDVYAR----PLEYYSDSVIFFELPACPVNDPNVLVGQSEVKGQVMLTNDGRTFSNPLDFSYLP 345          
BLAST of mRNA_M-pyrifera_M_contig97122.22371.1 vs. uniprot
Match: UPI0006449DA0 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006449DA0)

HSP 1 Score: 108 bits (271), Expect = 2.440e-25
Identity = 60/121 (49.59%), Postives = 76/121 (62.81%), Query Frame = 1
Query:    1 RTMPFYAYSHRKVLVRRRNIKLRAIGTKSGPMTGGIEMNVIGGPFIVGPSLSVCVTTPHGTINLRYGDGALERYSDTVMFFTLPPYPRRANEVFPT-QEVLVSVTVTNDGRTHSNAVPFTY 360
            R+ PFYAYS++KVL RRRN+ LR +    G   GG +M+V+G PFI   SL     TPHG I        +E YS++V+FFTLPPYP   N   P   E+ V V +TNDGR +SN +PFTY
Sbjct:  392 RSRPFYAYSNQKVLSRRRNVTLRTLSLTKGSTIGGEQMHVVGSPFIRCNSLRCIFHTPHGDIPANN----IELYSESVLFFTLPPYPSPPNFSPPDGTELPVQVVITNDGRNYSNPLPFTY 508          
BLAST of mRNA_M-pyrifera_M_contig97122.22371.1 vs. uniprot
Match: F4Q9J0_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q9J0_CAVFA)

HSP 1 Score: 107 bits (266), Expect = 1.620e-24
Identity = 59/121 (48.76%), Postives = 76/121 (62.81%), Query Frame = 1
Query:    1 RTMPFYAYSHRKVLVRRRNIKLRAIGTKSGPMTGGIEMNVIGGPFIVGPSLSVCVTTPHGTINLRYGDGALERYSDTVMFFTLPPYPRRANEVFPT-QEVLVSVTVTNDGRTHSNAVPFTY 360
            R+  FYAYS++KVL RRRN+ LR +    G   GG +M+V+G PFI   SL     TPHG I        +E +S++V+FFTLPPYP  AN   P   E+ V V +TNDGR +SN +PFTY
Sbjct:  524 RSRAFYAYSNQKVLSRRRNVTLRTLSNNRGSTQGGDQMHVVGSPFIRCNSLRCIFHTPHGDIPANN----IELFSESVLFFTLPPYPAPANFCPPDGTELPVQVVITNDGRNYSNPLPFTY 640          
BLAST of mRNA_M-pyrifera_M_contig97122.22371.1 vs. uniprot
Match: F1A0T9_DICPU (IPT/TIG domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A0T9_DICPU)

HSP 1 Score: 102 bits (255), Expect = 1.910e-24
Identity = 57/121 (47.11%), Postives = 74/121 (61.16%), Query Frame = 1
Query:    1 RTMPFYAYSHRKVLVRRRNIKLRAIGTKSGPMTGGIEMNVIGGPFIVGPSLSVCVTTPHGTINLRYGDGALERYSDTVMFFTLPPYPRRANEVFPT-QEVLVSVTVTNDGRTHSNAVPFTY 360
            R+ PFYAYS++KVL RRRN+ LR + +  G   GG +M+V+G PFI   SL     TPHG +        +E YS++V+FFTLPPYP       P   E+ V V +TNDGR  SN + FTY
Sbjct:  123 RSRPFYAYSNQKVLSRRRNVTLRTLSSNRGTTLGGDQMHVVGSPFIRCNSLKCIFHTPHGDV----AASNIELYSESVLFFTLPPYPIPPGFNSPEGTELPVQVVITNDGRNFSNPLSFTY 239          
BLAST of mRNA_M-pyrifera_M_contig97122.22371.1 vs. uniprot
Match: A0A8J4Q3E4_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q3E4_9MYCE)

HSP 1 Score: 106 bits (264), Expect = 3.090e-24
Identity = 58/121 (47.93%), Postives = 77/121 (63.64%), Query Frame = 1
Query:    1 RTMPFYAYSHRKVLVRRRNIKLRAIGTKSGPMTGGIEMNVIGGPFIVGPSLSVCVTTPHGTINLRYGDGALERYSDTVMFFTLPPYPRRANEVFPT-QEVLVSVTVTNDGRTHSNAVPFTY 360
            R+ PFYAYS++KVL RRRN+ LR + +  G   GG +M+V+G PFI   SL   + TP G +        +E YS++V+FFTLPPYP  AN   P   E+ V + VTNDGR +SN + FTY
Sbjct:  572 RSRPFYAYSNQKVLSRRRNVTLRTLSSTRGTTLGGEQMHVVGSPFIRCSSLKCIIHTPQGDVPASN----IELYSESVLFFTLPPYPIPANFSQPEGTELPVQIVVTNDGRNYSNPLSFTY 688          
BLAST of mRNA_M-pyrifera_M_contig97122.22371.1 vs. uniprot
Match: UPI000644D875 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644D875)

HSP 1 Score: 105 bits (262), Expect = 4.370e-24
Identity = 58/121 (47.93%), Postives = 75/121 (61.98%), Query Frame = 1
Query:    1 RTMPFYAYSHRKVLVRRRNIKLRAIGTKSGPMTGGIEMNVIGGPFIVGPSLSVCVTTPHGTINLRYGDGALERYSDTVMFFTLPPYPRRANEVFPT-QEVLVSVTVTNDGRTHSNAVPFTY 360
            R+ PFYAYS++KVL RRRN+ LR + +  G   GG +M+V+G PFI   SL     T HG I        +E +S++V+FFTLPPYP   N   P   E+ V V  TNDGR +SN +PFTY
Sbjct:  395 RSRPFYAYSNQKVLSRRRNVTLRTLSSNKGSSLGGDQMHVVGSPFIRCNSLRCIFHTAHGDIPANN----IELFSESVLFFTLPPYPAPPNFCPPDGTELAVQVVTTNDGRNYSNPLPFTY 511          
BLAST of mRNA_M-pyrifera_M_contig97122.22371.1 vs. uniprot
Match: A0A151ZHG7_9MYCE (Uncharacterized protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZHG7_9MYCE)

HSP 1 Score: 103 bits (258), Expect = 1.890e-23
Identity = 58/121 (47.93%), Postives = 75/121 (61.98%), Query Frame = 1
Query:    1 RTMPFYAYSHRKVLVRRRNIKLRAIGTKSGPMTGGIEMNVIGGPFIVGPSLSVCVTTPHGTINLRYGDGALERYSDTVMFFTLPPYPRRANEVFPT-QEVLVSVTVTNDGRTHSNAVPFTY 360
            R+  FYAYS++KVL RRRN+ LR + +  G   GG +M+V+G PFI   SL     TPHG I        +E YS++V+FFTLPPYP   N   P   E+ V V +TNDGR +SN + FTY
Sbjct:  482 RSRAFYAYSNQKVLSRRRNVTLRTLSSNRGTSLGGDQMHVVGSPFIRCNSLRCIFHTPHGDIPATN----IELYSESVLFFTLPPYPTPPNFSAPEGTELPVQVVITNDGRNYSNPLAFTY 598          
BLAST of mRNA_M-pyrifera_M_contig97122.22371.1 vs. uniprot
Match: Q75JY0_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q75JY0_DICDI)

HSP 1 Score: 100 bits (250), Expect = 2.450e-22
Identity = 56/121 (46.28%), Postives = 74/121 (61.16%), Query Frame = 1
Query:    1 RTMPFYAYSHRKVLVRRRNIKLRAIGTKSGPMTGGIEMNVIGGPFIVGPSLSVCVTTPHGTINLRYGDGALERYSDTVMFFTLPPYPRRANEVFPT-QEVLVSVTVTNDGRTHSNAVPFTY 360
            R+ PFYAYS++KVL RRRN+ LR + +  G   GG +M+V+G PFI   SL     TPHG +        +E +S++V+FFTLPPYP       P   E+ V V +TNDGR  SN + FTY
Sbjct:  705 RSRPFYAYSNQKVLSRRRNVTLRTLSSNRGTTLGGDQMHVVGSPFIRCNSLKCIFHTPHGDVPASN----IELFSESVLFFTLPPYPIPQGFNSPEGTELPVQVVITNDGRNFSNPLSFTY 821          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97122.22371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A7S4HMI6_9EUKA3.090e-3452.10Hypothetical protein n=2 Tax=Vannella sp. CB-2014 ... [more]
L8H608_ACACA2.760e-2751.59IPT/TIG domain containing protein n=1 Tax=Acantham... [more]
A0A2P6N756_9EUKA3.500e-2649.59Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
UPI0006449DA02.440e-2549.59hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
F4Q9J0_CAVFA1.620e-2448.76Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
F1A0T9_DICPU1.910e-2447.11IPT/TIG domain-containing protein n=1 Tax=Dictyost... [more]
A0A8J4Q3E4_9MYCE3.090e-2447.93Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
UPI000644D8754.370e-2447.93hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A151ZHG7_9MYCE1.890e-2347.93Uncharacterized protein n=1 Tax=Tieghemostelium la... [more]
Q75JY0_DICDI2.450e-2246.28Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97122contigM-pyrifera_M_contig97122:47..476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue1.9e-19
Seed eggNOG ortholog5786.XP_003293286.1
Hectar predicted targeting categorymitochondrion
EggNOG OGs292ZX@1,2R9WR@2759,3XGBF@554915
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons2
Model size366
Cds size360
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97122.22371.1prot_M-pyrifera_M_contig97122.22371.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97122 53..476 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816887.6786509-UTR-M-pyrifera_M_contig97122:46..521622816887.6786509-UTR-M-pyrifera_M_contig97122:46..52Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig97122 47..52 +
1692278237.3123913-UTR-M-pyrifera_M_contig97122:46..521692278237.3123913-UTR-M-pyrifera_M_contig97122:46..52Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig97122 47..52 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816887.6901262-CDS-M-pyrifera_M_contig97122:52..981622816887.6901262-CDS-M-pyrifera_M_contig97122:52..98Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97122 53..98 +
1692278237.3239594-CDS-M-pyrifera_M_contig97122:52..981692278237.3239594-CDS-M-pyrifera_M_contig97122:52..98Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97122 53..98 +
1622816887.7001405-CDS-M-pyrifera_M_contig97122:162..4761622816887.7001405-CDS-M-pyrifera_M_contig97122:162..476Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97122 163..476 +
1692278237.3339648-CDS-M-pyrifera_M_contig97122:162..4761692278237.3339648-CDS-M-pyrifera_M_contig97122:162..476Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97122 163..476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97122.22371.1

>prot_M-pyrifera_M_contig97122.22371.1 ID=prot_M-pyrifera_M_contig97122.22371.1|Name=mRNA_M-pyrifera_M_contig97122.22371.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
MPFYAYSHRKVLVRRRNIKLRAIGTKSGPMTGGIEMNVIGGPFIVGPSLS
VCVTTPHGTINLRYGDGALERYSDTVMFFTLPPYPRRANEVFPTQEVLVS
VTVTNDGRTHSNAVPFTYQP
back to top

mRNA from alignment at M-pyrifera_M_contig97122:47..476+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97122.22371.1 ID=mRNA_M-pyrifera_M_contig97122.22371.1|Name=mRNA_M-pyrifera_M_contig97122.22371.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=430bp|location=Sequence derived from alignment at M-pyrifera_M_contig97122:47..476+ (Macrocystis pyrifera P11B4 male)
CGCACGATGCCCTTCTACGCCTACTCTCACCGGAAGGTTCTTGTCCGTCG AAGTAAGTATTCCTGCCACTCGCGTAGCGAGCCCCGATCTGGCGAGCGCG ATCTGACGTCGTCCAGGGAACATCAAACTCAGAGCGATTGGAACCAAGTC AGGCCCCATGACAGGAGGCATCGAGATGAACGTCATCGGCGGGCCGTTCA TTGTTGGCCCTTCCCTCTCTGTTTGCGTCACAACCCCCCACGGCACCATC AACCTTCGCTACGGAGACGGCGCCCTGGAGCGTTATTCTGATACTGTCAT GTTCTTCACTCTTCCCCCGTACCCAAGGCGTGCGAACGAGGTGTTCCCCA CCCAGGAGGTTTTGGTGTCGGTCACGGTCACGAACGACGGGAGGACCCAT AGCAATGCCGTGCCGTTCACATACCAGCCC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig97122:47..476+

>mRNA_M-pyrifera_M_contig97122.22371.1 ID=mRNA_M-pyrifera_M_contig97122.22371.1|Name=mRNA_M-pyrifera_M_contig97122.22371.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig97122:47..476+ (Macrocystis pyrifera P11B4 male)
ATGCCCTTCTACGCCTACTCTCACCGGAAGGTTCTTGTCCGTCGAAATGC
CCTTCTACGCCTACTCTCACCGGAAGGTTCTTGTCCGTCGAAGGAACATC
AAACTCAGAGCGATTGGAACCAAGTCAGGCCCCATGACAGGAGGCATCGA
GATGAACGTCATCGGCGGGCCGTTCATTGTTGGCCCTTCCCTCTCTGTTT
GCGTCACAACCCCCCACGGCACCATCAACCTTCGCTACGGAGACGGCGCC
CTGGAGCGTTATTCTGATACTGTCATGTTCTTCACTCTTCCCCCGTACCC
AAGGCGTGCGAACGAGGTGTTCCCCACCCAGGAGGTTTTGGTGTCGGTCA
CGGTCACGAACGACGGGAGGACCCATAGCAATGCCGTGCCGTTCACATAC
CAGCCCGGAACATCAAACTCAGAGCGATTGGAACCAAGTCAGGCCCCATG
ACAGGAGGCATCGAGATGAACGTCATCGGCGGGCCGTTCATTGTTGGCCC
TTCCCTCTCTGTTTGCGTCACAACCCCCCACGGCACCATCAACCTTCGCT
ACGGAGACGGCGCCCTGGAGCGTTATTCTGATACTGTCATGTTCTTCACT
CTTCCCCCGTACCCAAGGCGTGCGAACGAGGTGTTCCCCACCCAGGAGGT
TTTGGTGTCGGTCACGGTCACGAACGACGGGAGGACCCATAGCAATGCCG
TGCCGTTCACATACCAGCCC
back to top