mRNA_M-pyrifera_M_contig96639.22254.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig96639.22254.1 vs. uniprot
Match: D7G8W9_ECTSI (CPSF_A domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W9_ECTSI) HSP 1 Score: 119 bits (297), Expect = 1.400e-31 Identity = 57/62 (91.94%), Postives = 59/62 (95.16%), Query Frame = 1 Query: 4 KLTRRRTRGNLRGGARYCLLAGTMDGGLGAILPVDERVFRRLYALQGIMCNALGHTGAANPR 189 KLTRRRTRGNLR GARYCLLAGT+DGGLGA+LPVDERVFRRLYALQGIM NALGH GAANPR Sbjct: 131 KLTRRRTRGNLRDGARYCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPR 192
BLAST of mRNA_M-pyrifera_M_contig96639.22254.1 vs. uniprot
Match: K8YVP3_NANGC (Cleavage and polyadenylation specificity factor subunit 1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YVP3_NANGC) HSP 1 Score: 67.0 bits (162), Expect = 2.360e-11 Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 1 Query: 28 GNLRGGARYCLLAGTMDGGLGAILPVDERVFRRLYALQGIMCNALGHTGAANPRWVLFVSA 210 G R G R ++ G+++GG+GA++PV+E+V+RRLYALQ +M NAL H GA NPR V A Sbjct: 280 GAYRAGVRV-MVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPRGFRLVEA 339
BLAST of mRNA_M-pyrifera_M_contig96639.22254.1 vs. uniprot
Match: A0A4D9CM95_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CM95_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 2.570e-11 Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 1 Query: 28 GNLRGGARYCLLAGTMDGGLGAILPVDERVFRRLYALQGIMCNALGHTGAANPRWVLFVSA 210 G R G R ++ G+++GG+GA++PV+E+V+RRLYALQ +M NAL H GA NPR V A Sbjct: 1836 GAYRAGVRV-MVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPRGFRLVEA 1895
BLAST of mRNA_M-pyrifera_M_contig96639.22254.1 vs. uniprot
Match: A0A7S1BI36_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BI36_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.630e-10 Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1 Query: 49 RYCLLAGTMDGGLGAILPVDERVFRRLYALQGIMCNALGHTGAANPR-WVLF 201 R+ + GT+DGG GA+ PV+ER FRRLYALQG++ NAL +GA N R W LF Sbjct: 430 RFGVHFGTVDGGFGAVFPVNERTFRRLYALQGVVGNALQQSGALNVRGWRLF 481
BLAST of mRNA_M-pyrifera_M_contig96639.22254.1 vs. uniprot
Match: A0A7S2D6V7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D6V7_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 1.720e-10 Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 1 Query: 49 RYCLLAGTMDGGLGAILPVDERVFRRLYALQGIMCNALGHTGAANPR 189 R+ ++DG GA++PVDE FRRLYALQGI+ NAL HT A NPR Sbjct: 116 RFASWFASLDGAAGAVVPVDEHSFRRLYALQGILVNALPHTAALNPR 162
BLAST of mRNA_M-pyrifera_M_contig96639.22254.1 vs. uniprot
Match: A0A7S2FC30_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FC30_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 2.960e-10 Identity = 26/41 (63.41%), Postives = 31/41 (75.61%), Query Frame = 1 Query: 67 GTMDGGLGAILPVDERVFRRLYALQGIMCNALGHTGAANPR 189 G++DG G I+P DER F+RLYALQGI+ NAL H A NPR Sbjct: 15 GSLDGSAGVIVPTDERPFKRLYALQGILINALPHVAALNPR 55
BLAST of mRNA_M-pyrifera_M_contig96639.22254.1 vs. uniprot
Match: A0A7S2D575_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D575_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 4.120e-10 Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 1 Query: 49 RYCLLAGTMDGGLGAILPVDERVFRRLYALQGIMCNALGHTGAANPR 189 R+ ++DG GA++PVDE FRRLYALQGI+ NAL HT A NPR Sbjct: 350 RFASWFASLDGAAGAVVPVDEHSFRRLYALQGILVNALPHTAALNPR 396
BLAST of mRNA_M-pyrifera_M_contig96639.22254.1 vs. uniprot
Match: A0A835Z873_9STRA (Cleavage/polyadenylation specificity factor, A subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z873_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 5.170e-10 Identity = 28/57 (49.12%), Postives = 35/57 (61.40%), Query Frame = 1 Query: 19 RTRGNLRGGARYCLLAGTMDGGLGAILPVDERVFRRLYALQGIMCNALGHTGAANPR 189 R R N R+ G +DG + + P++ER FRRLYALQG+MCNAL H NPR Sbjct: 151 RLRNNKLNAPRFGAAVGGLDGSVALLAPLEERAFRRLYALQGVMCNALEHGAGVNPR 207
BLAST of mRNA_M-pyrifera_M_contig96639.22254.1 vs. uniprot
Match: A0A6G0WGC0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WGC0_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 1.810e-8 Identity = 26/46 (56.52%), Postives = 30/46 (65.22%), Query Frame = 1 Query: 52 YCLLAGTMDGGLGAILPVDERVFRRLYALQGIMCNALGHTGAANPR 189 Y L T +GGLG ++PV ER+FRRLY LQ IM NAL NPR Sbjct: 1372 YVTLLATAEGGLGVLIPVQERLFRRLYTLQSIMINALPQNAGLNPR 1417
BLAST of mRNA_M-pyrifera_M_contig96639.22254.1 vs. uniprot
Match: A0A397FV89_9STRA (CPSF_A domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FV89_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 3.250e-8 Identity = 24/46 (52.17%), Postives = 29/46 (63.04%), Query Frame = 1 Query: 52 YCLLAGTMDGGLGAILPVDERVFRRLYALQGIMCNALGHTGAANPR 189 Y L T +GGLG ++PV ER+FRR+Y LQ IM N L NPR Sbjct: 51 YVTLLATAEGGLGVLIPVQERLFRRMYTLQSIMINVLPQNAGLNPR 96 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig96639.22254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig96639.22254.1 >prot_M-pyrifera_M_contig96639.22254.1 ID=prot_M-pyrifera_M_contig96639.22254.1|Name=mRNA_M-pyrifera_M_contig96639.22254.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp MKLTRRRTRGNLRGGARYCLLAGTMDGGLGAILPVDERVFRRLYALQGIMback to top mRNA from alignment at M-pyrifera_M_contig96639:287..496+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig96639.22254.1 ID=mRNA_M-pyrifera_M_contig96639.22254.1|Name=mRNA_M-pyrifera_M_contig96639.22254.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig96639:287..496+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig96639:287..496+ >mRNA_M-pyrifera_M_contig96639.22254.1 ID=mRNA_M-pyrifera_M_contig96639.22254.1|Name=mRNA_M-pyrifera_M_contig96639.22254.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig96639:287..496+ (Macrocystis pyrifera P11B4 male)back to top |