mRNA_M-pyrifera_M_contig96215.22177.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig96215.22177.1
Unique NamemRNA_M-pyrifera_M_contig96215.22177.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig96215.22177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig96215contigM-pyrifera_M_contig96215:3..350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816877.419381-CDS-M-pyrifera_M_contig96215:2..2721622816877.419381-CDS-M-pyrifera_M_contig96215:2..272Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96215 3..272 -
1692278231.4452224-CDS-M-pyrifera_M_contig96215:2..2721692278231.4452224-CDS-M-pyrifera_M_contig96215:2..272Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96215 3..272 -
1622816877.4341922-CDS-M-pyrifera_M_contig96215:305..3501622816877.4341922-CDS-M-pyrifera_M_contig96215:305..350Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96215 306..350 -
1692278231.4547434-CDS-M-pyrifera_M_contig96215:305..3501692278231.4547434-CDS-M-pyrifera_M_contig96215:305..350Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96215 306..350 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig96215.22177.1prot_M-pyrifera_M_contig96215.22177.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig96215 3..350 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig96215.22177.1

>prot_M-pyrifera_M_contig96215.22177.1 ID=prot_M-pyrifera_M_contig96215.22177.1|Name=mRNA_M-pyrifera_M_contig96215.22177.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
HYQARDSALAKLEEVSEEIEDRAEARRLKLEEEFTAKREGSELEFKGQCE
ALDKRAAELTELETHLNLEAPKAERRKVFDDLRDTLKEWDERYALSSKTN
RKRYP
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mRNA from alignment at M-pyrifera_M_contig96215:3..350-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig96215.22177.1 ID=mRNA_M-pyrifera_M_contig96215.22177.1|Name=mRNA_M-pyrifera_M_contig96215.22177.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig96215:3..350- (Macrocystis pyrifera P11B4 male)
CATTATCAGGCACGGGATTCAGCACTCGCCAAGTTGGAGGAAGTAGTAGC
GCGATACGCGATAGATCTCACAAGGAAGAGTGAAGAGATTGAGGATCGCG
CTGAGGCTCGTAGGCTCAAACTTGAGGAAGAATTTACCGCGAAACGGGAG
GGGAGTGAACTTGAATTCAAGGGACAATGTGAAGCACTCGACAAACGTGC
GGCTGAACTGACTGAACTGGAGACACATCTCAACCTTGAAGCTCCCAAGG
CGGAGCGTCGTAAGGTATTCGACGATCTTCGAGATACACTCAAAGAATGG
GATGAACGATACGCATTGAGTAGCAAGACCAACCGAAAGCGGTATCCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig96215:3..350-

>mRNA_M-pyrifera_M_contig96215.22177.1 ID=mRNA_M-pyrifera_M_contig96215.22177.1|Name=mRNA_M-pyrifera_M_contig96215.22177.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig96215:3..350- (Macrocystis pyrifera P11B4 male)
CATTATCAGGCACGGGATTCAGCACTCGCCAAGTTGGAGGAAGTACATTA
TCAGGCACGGGATTCAGCACTCGCCAAGTTGGAGGAAGTAAGTGAAGAGA
TTGAGGATCGCGCTGAGGCTCGTAGGCTCAAACTTGAGGAAGAATTTACC
GCGAAACGGGAGGGGAGTGAACTTGAATTCAAGGGACAATGTGAAGCACT
CGACAAACGTGCGGCTGAACTGACTGAACTGGAGACACATCTCAACCTTG
AAGCTCCCAAGGCGGAGCGTCGTAAGGTATTCGACGATCTTCGAGATACA
CTCAAAGAATGGGATGAACGATACGCATTGAGTAGCAAGACCAACCGAAA
GCGGTATCCAAGTGAAGAGATTGAGGATCGCGCTGAGGCTCGTAGGCTCA
AACTTGAGGAAGAATTTACCGCGAAACGGGAGGGGAGTGAACTTGAATTC
AAGGGACAATGTGAAGCACTCGACAAACGTGCGGCTGAACTGACTGAACT
GGAGACACATCTCAACCTTGAAGCTCCCAAGGCGGAGCGTCGTAAGGTAT
TCGACGATCTTCGAGATACACTCAAAGAATGGGATGAACGATACGCATTG
AGTAGCAAGACCAACCGAAAGCGGTATCCA
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