mRNA_M-pyrifera_M_contig96208.22175.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig96208.22175.1
Unique NamemRNA_M-pyrifera_M_contig96208.22175.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig96208.22175.1 vs. uniprot
Match: A0A812Y647_9DINO (NasE protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812Y647_9DINO)

HSP 1 Score: 181 bits (458), Expect = 1.540e-53
Identity = 76/116 (65.52%), Postives = 96/116 (82.76%), Query Frame = 1
Query:   10 EINSSWVEIGHIEDFDLDCGRVIRLQHGERVAVFRHQNGFSAMSNVCAHQGGPLGEGRVVDGCVTCPWHGYQYLPENGQSPPPYHEKIATYELRIEGNALLLNPEARAPGTPITPA 357
            E ++ W++IG + DF +D GRV+ + + ERVA+FRH++G SA+SNVCAHQ GPLGEGR+V+GCVTCPWHGYQY  +NGQSPPPY E+I TYELR+EG  +LLNPE   PGTP+TPA
Sbjct:  229 EADAPWIDIGLVNDFPMDQGRVVCIANQERVAIFRHKDGISALSNVCAHQAGPLGEGRIVNGCVTCPWHGYQYHADNGQSPPPYTERIPTYELRVEGERVLLNPEPNPPGTPVTPA 344          
BLAST of mRNA_M-pyrifera_M_contig96208.22175.1 vs. uniprot
Match: A0A2D7NHF4_9PLAN ((2Fe-2S)-binding protein n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A2D7NHF4_9PLAN)

HSP 1 Score: 160 bits (404), Expect = 1.680e-45
Identity = 67/114 (58.77%), Postives = 85/114 (74.56%), Query Frame = 1
Query:   25 WVEIGHIEDFDLDCGRVIRLQHGERVAVFRHQNGFSAMSNVCAHQGGPLGEGRVVDGCVTCPWHGYQYLPENGQSPPPYHEKIATYELRIEGNALLLNPEARAPGTPITPAKSA 366
            W+ +G  ++   D G+V+ +    RVAVFR   GFSA+SN CAHQGGPLGEGR++DGC+TCPWHGYQY+  NGQSPPP+ E+I TYELRI+G  + LNP A+ PGT + PA  A
Sbjct:  235 WIRVGDCDEIPPDAGKVVSVGGCHRVAVFRKDEGFSAISNTCAHQGGPLGEGRLIDGCLTCPWHGYQYIVTNGQSPPPFTERIETYELRIDGETIWLNPNAKTPGTEVPPATRA 348          
BLAST of mRNA_M-pyrifera_M_contig96208.22175.1 vs. uniprot
Match: A0A2D5Z7L6_9BACT ((2Fe-2S)-binding protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2D5Z7L6_9BACT)

HSP 1 Score: 155 bits (392), Expect = 9.700e-44
Identity = 62/113 (54.87%), Postives = 85/113 (75.22%), Query Frame = 1
Query:   22 SWVEIGHIEDFDLDCGRVIRLQHGERVAVFRHQNGFSAMSNVCAHQGGPLGEGRVVDGCVTCPWHGYQYLPENGQSPPPYHEKIATYELRIEGNALLLNPEARAPGTPITPAK 360
            SW+++G ++   +D   V+    GER+AV+RH+ G SA+SNVCAHQ GPLGEGR+VDGCVTCPWHGYQY P +G SPPP+ EK+ TY + +E   +L++P+  APGT + PA+
Sbjct:  232 SWIDVGDVDRIPMDAATVVSPPDGERIAVYRHEGGISAISNVCAHQNGPLGEGRIVDGCVTCPWHGYQYRPGDGTSPPPFTEKVPTYRVHVEKGRVLVDPDPLAPGTAVDPAR 344          
BLAST of mRNA_M-pyrifera_M_contig96208.22175.1 vs. uniprot
Match: A0A3D4UJ31_9BACT ((2Fe-2S)-binding protein n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A3D4UJ31_9BACT)

HSP 1 Score: 152 bits (383), Expect = 2.330e-42
Identity = 61/113 (53.98%), Postives = 87/113 (76.99%), Query Frame = 1
Query:   19 SSWVEIGHIEDFDLDCGRVIRLQHGERVAVFRHQNGFSAMSNVCAHQGGPLGEGRVVDGCVTCPWHGYQYLPENGQSPPPYHEKIATYELRIEGNALLLNPEARAPGTPITPA 357
            ++WV++  ++D   +   + ++   ER+AVFR+ N  SAM+NVC HQGGPLGEG++VDGCVTCPWHGYQ+ P++GQSPPP+ EKIATY++R+EG  +L+NP+    GT + PA
Sbjct:  233 ATWVDVCSVDDIKPERAHITQISSSERIAVFRNGNTVSAMTNVCPHQGGPLGEGKIVDGCVTCPWHGYQFKPDDGQSPPPFTEKIATYDIRVEGRRVLINPKPNEAGTRVPPA 345          
BLAST of mRNA_M-pyrifera_M_contig96208.22175.1 vs. uniprot
Match: A0A7X0LLR6_9BACT (DMSO/TMAO reductase YedYZ heme-binding membrane subunit n=1 Tax=Algisphaera agarilytica TaxID=1385975 RepID=A0A7X0LLR6_9BACT)

HSP 1 Score: 152 bits (383), Expect = 2.600e-42
Identity = 62/114 (54.39%), Postives = 84/114 (73.68%), Query Frame = 1
Query:   16 NSSWVEIGHIEDFDLDCGRVIRLQHGERVAVFRHQNGFSAMSNVCAHQGGPLGEGRVVDGCVTCPWHGYQYLPENGQSPPPYHEKIATYELRIEGNALLLNPEARAPGTPITPA 357
            +  W+++  + D +   G+V+ L   ER+AV ++    SA+SNVCAHQ GPLGEG+VVDGC+TCPWHGYQYLP NGQSPPP+ EKI TY + ++G+ +L+NPE   PGT + PA
Sbjct:  233 DQEWIDVADVNDIEDGYGKVVTLAGSERIAVLKYDGKVSAVSNVCAHQHGPLGEGKVVDGCLTCPWHGYQYLPHNGQSPPPFTEKIPTYRVSVQGSRILVNPEPLPPGTAVEPA 346          
BLAST of mRNA_M-pyrifera_M_contig96208.22175.1 vs. uniprot
Match: A0A3M2C6I6_9BACT ((2Fe-2S)-binding protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2C6I6_9BACT)

HSP 1 Score: 151 bits (382), Expect = 2.740e-42
Identity = 65/114 (57.02%), Postives = 85/114 (74.56%), Query Frame = 1
Query:   19 SSWVEIGHIEDFDLDCGRVIRLQHGERVAVFRHQNGFSAMSNVCAHQGGPLGEGRVVDGCVTCPWHGYQYLPENGQSPPPYHEKIATYELRIEGNALLLNPEARAPGTPITPAK 360
            S W+++G   D      RV+ ++  ERVAVFR  +   A+++VCAHQGGPL EG++VDGC+TCPWHGYQY P +G SPPPY EKIATYELR+E   +LLNP+   PGTP++PA+
Sbjct:  226 SEWIDLGPCMDIPESRARVVCVRDRERVAVFRDGDRLHAVTSVCAHQGGPLAEGKIVDGCITCPWHGYQYRPGDGCSPPPYTEKIATYELRVESGRVLLNPDPNPPGTPVSPAE 339          
BLAST of mRNA_M-pyrifera_M_contig96208.22175.1 vs. uniprot
Match: A8TWH2_9PROT (Rieske 2Fe-2S domain protein n=1 Tax=alpha proteobacterium BAL199 TaxID=331869 RepID=A8TWH2_9PROT)

HSP 1 Score: 148 bits (374), Expect = 4.450e-41
Identity = 63/114 (55.26%), Postives = 83/114 (72.81%), Query Frame = 1
Query:   25 WVEIGHIEDFDLDCGRVIRLQHGERVAVFRHQNGFSAMSNVCAHQGGPLGEGRVVDGCVTCPWHGYQYLPENGQSPPPYHEKIATYELRIEGNALLLNPEARAPGTPITPAKSA 366
            WV++  I++ +   GR + L  GER AVFRH +  SA+SN CAHQ GPLGEGR++DGCVTCPWHG+QY PE G++P P+ EK+ATY LR +G+ LL++P A  PGT   P + A
Sbjct:  232 WVQVARIDELEDGVGRTVTLPGGERAAVFRHGDKISALSNACAHQNGPLGEGRILDGCVTCPWHGFQYDPETGRAPAPFTEKVATYRLRRDGDRLLIDPRALPPGTRTEPVRLA 345          
BLAST of mRNA_M-pyrifera_M_contig96208.22175.1 vs. uniprot
Match: A0A3M8G237_9FLAO ((2Fe-2S)-binding protein n=1 Tax=Winogradskyella sp. TaxID=1883156 RepID=A0A3M8G237_9FLAO)

HSP 1 Score: 148 bits (373), Expect = 5.370e-41
Identity = 60/114 (52.63%), Postives = 85/114 (74.56%), Query Frame = 1
Query:   13 INSSWVEIGHIEDFDLDCGRVIRLQHGERVAVFRHQNGFSAMSNVCAHQGGPLGEGRVVDGCVTCPWHGYQYLPENGQSPPPYHEKIATYELRIEGNALLLNPEARAPGTPITP 354
            +   W+E+  I+D + D  ++  +   ERVA+F++    SA+ NVC HQGGPLGEG+++DGCVTCPWHGYQYLP NGQSPPP+ EK+ATY+L+++ + + +NPEA A GT + P
Sbjct:  227 VEEGWLEVCSIDDIEEDRAKIFTVNK-ERVAIFKYDGKLSAIHNVCKHQGGPLGEGKIIDGCVTCPWHGYQYLPHNGQSPPPFTEKVATYQLKLKNDIVYINPEALAEGTEVKP 339          
BLAST of mRNA_M-pyrifera_M_contig96208.22175.1 vs. uniprot
Match: A0A142XKD3_9BACT (Assimilatory nitrite reductase [NAD(P)H] small subunit n=2 Tax=Gemmata TaxID=113 RepID=A0A142XKD3_9BACT)

HSP 1 Score: 148 bits (373), Expect = 6.990e-41
Identity = 62/120 (51.67%), Postives = 86/120 (71.67%), Query Frame = 1
Query:    1 DSIEINSSWVEIGHIEDFDLDCGRVIRLQHGERVAVFRHQNGFSAMSNVCAHQGGPLGEGRVVDGCVTCPWHGYQYLPENGQSPPPYHEKIATYELRIEGNALLLNPEARAPGTPITPAK 360
            D + +   WV+ G +++   D  +V+ L   ERVAVFRH  G SA++NVCAHQ GPLGEG+VVDGC+TCPWHG++Y PE+G SPPP+ EKIATY + +    +L++P+   PGT + PA+
Sbjct:  226 DRVPLPIGWVDAGSVDEIPQDRAKVVCLPGHERVAVFRHAGGISAVTNVCAHQRGPLGEGKVVDGCITCPWHGWEYRPEDGCSPPPFQEKIATYRVAVRDRRVLIDPDPLPPGTHVEPAR 345          
BLAST of mRNA_M-pyrifera_M_contig96208.22175.1 vs. uniprot
Match: A0A3A9USP0_9FLAO ((2Fe-2S)-binding protein n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A3A9USP0_9FLAO)

HSP 1 Score: 147 bits (372), Expect = 7.740e-41
Identity = 64/115 (55.65%), Postives = 84/115 (73.04%), Query Frame = 1
Query:   10 EINSSWVEIGHIEDFDLDCGRVIRLQHGERVAVFRHQNGFSAMSNVCAHQGGPLGEGRVVDGCVTCPWHGYQYLPENGQSPPPYHEKIATYELRIEGNALLLNPEARAPGTPITP 354
            +I   W  +  I++   D  ++  + + ER+AVF++ N  SA+SNVC HQGGPLGEG+V+DGCVTCPWHGYQYLP NGQSPPP+ EKIATY L+ E N + ++PEA A GT + P
Sbjct:  227 DIVDGWEYVCDIDEIPEDRAKIF-IVNNERIAVFKYDNKLSAISNVCKHQGGPLGEGKVIDGCVTCPWHGYQYLPHNGQSPPPFTEKIATYNLKTENNKIYVHPEAMAEGTEVNP 340          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig96208.22175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812Y647_9DINO1.540e-5365.52NasE protein n=1 Tax=Symbiodinium sp. CCMP2592 Tax... [more]
A0A2D7NHF4_9PLAN1.680e-4558.77(2Fe-2S)-binding protein n=2 Tax=Planctomycetes Ta... [more]
A0A2D5Z7L6_9BACT9.700e-4454.87(2Fe-2S)-binding protein n=1 Tax=Phycisphaeraceae ... [more]
A0A3D4UJ31_9BACT2.330e-4253.98(2Fe-2S)-binding protein n=2 Tax=Phycisphaerae Tax... [more]
A0A7X0LLR6_9BACT2.600e-4254.39DMSO/TMAO reductase YedYZ heme-binding membrane su... [more]
A0A3M2C6I6_9BACT2.740e-4257.02(2Fe-2S)-binding protein n=1 Tax=Planctomycetes ba... [more]
A8TWH2_9PROT4.450e-4155.26Rieske 2Fe-2S domain protein n=1 Tax=alpha proteob... [more]
A0A3M8G237_9FLAO5.370e-4152.63(2Fe-2S)-binding protein n=1 Tax=Winogradskyella s... [more]
A0A142XKD3_9BACT6.990e-4151.67Assimilatory nitrite reductase [NAD(P)H] small sub... [more]
A0A3A9USP0_9FLAO7.740e-4155.65(2Fe-2S)-binding protein n=1 Tax=Flavobacteriaceae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig96208contigM-pyrifera_M_contig96208:323..718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score147.9
Seed ortholog evalue3.3e-33
Seed eggNOG ortholog331869.BAL199_29887
Preferred nameyedZ_2
KEGG rclassRC00098,RC00176
KEGG koko:K00363,ko:K05710,ko:K17247
KEGG ReactionR00787,R06782,R06783
KEGG Pathwayko00360,ko00910,ko01120,ko01220,map00360,map00910,map01120,map01220
KEGG ModuleM00530,M00545
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
EggNOG OGsCOG2146@1,COG2146@2,COG2717@1,COG2717@2
EC1.7.1.15
COG Functional cat.C
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEbr01602,ko00000,ko00001,ko00002,ko01000
Exons1
Model size396
Cds size396
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816877.3254352-CDS-M-pyrifera_M_contig96208:322..7181622816877.3254352-CDS-M-pyrifera_M_contig96208:322..718Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96208 323..718 -
1692278231.40276-CDS-M-pyrifera_M_contig96208:322..7181692278231.40276-CDS-M-pyrifera_M_contig96208:322..718Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96208 323..718 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig96208.22175.1prot_M-pyrifera_M_contig96208.22175.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig96208 323..718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig96208.22175.1

>prot_M-pyrifera_M_contig96208.22175.1 ID=prot_M-pyrifera_M_contig96208.22175.1|Name=mRNA_M-pyrifera_M_contig96208.22175.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
DSIEINSSWVEIGHIEDFDLDCGRVIRLQHGERVAVFRHQNGFSAMSNVC
AHQGGPLGEGRVVDGCVTCPWHGYQYLPENGQSPPPYHEKIATYELRIEG
NALLLNPEARAPGTPITPAKSALQCTESCDG*
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mRNA from alignment at M-pyrifera_M_contig96208:323..718-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig96208.22175.1 ID=mRNA_M-pyrifera_M_contig96208.22175.1|Name=mRNA_M-pyrifera_M_contig96208.22175.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig96208:323..718- (Macrocystis pyrifera P11B4 male)
GACAGCATCGAGATCAACAGCAGCTGGGTCGAGATCGGACACATCGAGGA TTTCGATCTTGATTGTGGGCGCGTAATCCGCTTGCAGCATGGGGAGCGGG TCGCAGTGTTCCGGCATCAAAACGGGTTCTCCGCAATGTCCAATGTGTGC GCTCATCAGGGCGGACCCCTGGGCGAGGGGCGAGTCGTTGACGGATGCGT CACTTGTCCCTGGCACGGCTATCAGTATCTTCCCGAGAATGGGCAGAGCC CGCCGCCGTATCACGAGAAGATCGCGACTTATGAGCTCCGCATCGAGGGG AACGCGCTGCTGCTGAACCCAGAAGCGAGGGCGCCGGGGACTCCGATCAC GCCTGCAAAGTCTGCGTTGCAATGCACGGAGTCTTGCGATGGATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig96208:323..718-

>mRNA_M-pyrifera_M_contig96208.22175.1 ID=mRNA_M-pyrifera_M_contig96208.22175.1|Name=mRNA_M-pyrifera_M_contig96208.22175.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig96208:323..718- (Macrocystis pyrifera P11B4 male)
GACAGCATCGAGATCAACAGCAGCTGGGTCGAGATCGGACACATCGAGGA
TTTCGATCTTGATTGTGGGCGCGTAATCCGCTTGCAGCATGGGGAGCGGG
TCGCAGTGTTCCGGCATCAAAACGGGTTCTCCGCAATGTCCAATGTGTGC
GCTCATCAGGGCGGACCCCTGGGCGAGGGGCGAGTCGTTGACGGATGCGT
CACTTGTCCCTGGCACGGCTATCAGTATCTTCCCGAGAATGGGCAGAGCC
CGCCGCCGTATCACGAGAAGATCGCGACTTATGAGCTCCGCATCGAGGGG
AACGCGCTGCTGCTGAACCCAGAAGCGAGGGCGCCGGGGACTCCGATCAC
GCCTGCAAAGTCTGCGTTGCAATGCACGGAGTCTTGCGATGGATGAGACA
GCATCGAGATCAACAGCAGCTGGGTCGAGATCGGACACATCGAGGATTTC
GATCTTGATTGTGGGCGCGTAATCCGCTTGCAGCATGGGGAGCGGGTCGC
AGTGTTCCGGCATCAAAACGGGTTCTCCGCAATGTCCAATGTGTGCGCTC
ATCAGGGCGGACCCCTGGGCGAGGGGCGAGTCGTTGACGGATGCGTCACT
TGTCCCTGGCACGGCTATCAGTATCTTCCCGAGAATGGGCAGAGCCCGCC
GCCGTATCACGAGAAGATCGCGACTTATGAGCTCCGCATCGAGGGGAACG
CGCTGCTGCTGAACCCAGAAGCGAGGGCGCCGGGGACTCCGATCACGCCT
GCAAAGTCTGCGTTGCAATGCACGGAGTCTTGCGATGGATGA
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