mRNA_M-pyrifera_M_contig96205.22174.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig96205.22174.1
Unique NamemRNA_M-pyrifera_M_contig96205.22174.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig96205.22174.1 vs. uniprot
Match: A0A2E7EHN3_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7EHN3_9PLAN)

HSP 1 Score: 69.7 bits (169), Expect = 6.310e-12
Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:  148 KVAAIRYLATVDCLCYPEVVHSLLISLDDCAEEVRYEALLALRKSCGSTCCPA 306
            KV AIR+L   DCLCYPEVV +L+ +L+DCAEEVRYEALLALR  C    C A
Sbjct:  167 KVKAIRFLGQQDCLCYPEVVDALVEALNDCAEEVRYEALLALRNGCTRGFCKA 219
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BLAST of mRNA_M-pyrifera_M_contig96205.22174.1 vs. uniprot
Match: D2QZK0_PIRSD (Uncharacterized protein n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) TaxID=530564 RepID=D2QZK0_PIRSD)

HSP 1 Score: 69.3 bits (168), Expect = 1.350e-11
Identity = 47/93 (50.54%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:   25 PHVPAVPPMAMSAIGGPAGAAPGGP-VATAAAISAQQKTTGEKVAAIRYLATVDCL-CYPEVVHSLLISLDDCAEEVRYEALLALRKSCGSTC 297
            P + A PP+   AI  PA A    P VA AA   A++    +KV AIRYL ++ C  CYP+V  +LL +LDDC E VRYEA+LALRKS G  C
Sbjct:   93 PGLEAKPPVL--AITDPANAESSNPAVAAAAGAKAEEDAAAQKVKAIRYLGSLGCGGCYPDVEPALLAALDDCTEAVRYEAVLALRKSGGDPC 183
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BLAST of mRNA_M-pyrifera_M_contig96205.22174.1 vs. uniprot
Match: A0A7V3NBI4_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V3NBI4_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 1.400e-8
Identity = 35/69 (50.72%), Postives = 43/69 (62.32%), Query Frame = 1 
Query:  100 VATAAAISAQQKTTGEKVAAIRYLATVDCLCY---PEVVHSLLISLDDCAEEVRYEALLALRKSCGSTC 297
            +ATAA I   Q    +K+ AI+YLATV C C     EV  +LL SLDDC EEVRY A LA+ +  G+ C
Sbjct:   93 IATAAKIKIDQDLAPQKIKAIKYLATVCCACKGYKKEVQEALLASLDDCTEEVRYAAALAICQCTGNVC 161
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BLAST of mRNA_M-pyrifera_M_contig96205.22174.1 vs. uniprot
Match: A0A257TL27_9BACT (Uncharacterized protein n=1 Tax=Planctomycetia bacterium 21-64-5 TaxID=1970542 RepID=A0A257TL27_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 1.780e-8
Identity = 43/103 (41.75%), Postives = 58/103 (56.31%), Query Frame = 1 
Query:   16 GLNPHVPAVPPMAMSAIGGPAGAAPG-GP-VATAAAISAQQKTTGEKVAAIRYLATVDCLCYPEVVHSLLISL---DDCAEEVRYEALLALRKSCGSTCCPAG 309
            G  P     PP+   AI  PA   PG GP +  AA I  ++    +K+ A++YLAT+ C CYP V  +L  SL   D+C EEVRYEA LA++++  S C   G
Sbjct:   19 GNRPGREPTPPL--KAIADPANLDPGNGPAINKAAEIKQKEDLAPQKIKALKYLATIGCGCYPGVEDALAKSLKFGDECTEEVRYEAALAIQEAAESNCAKCG 119
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BLAST of mRNA_M-pyrifera_M_contig96205.22174.1 vs. uniprot
Match: UPI00029B18AD (hypothetical protein n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=UPI00029B18AD)

HSP 1 Score: 50.8 bits (120), Expect = 4.190e-5
Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:  109 AAAISAQQKTTGEKVAAIRYLATVDCLCYPEVVHSLLIS-LDDCAEEVRYEALLALRKSCGSTCC 300
            AA I A Q     +V A+RYL T+DC+ YP+    L+ + L+D +E VRYEA++ALR      CC
Sbjct:   89 AAGIRAVQLDVPNRVKAVRYLGTLDCVTYPQAQDMLIATMLEDPSEIVRYEAVMALRNMLTRGCC 153
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig96205.22174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2E7EHN3_9PLAN6.310e-1266.04Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
D2QZK0_PIRSD1.350e-1150.54Uncharacterized protein n=1 Tax=Pirellula staleyi ... [more]
A0A7V3NBI4_9BACT1.400e-850.72Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A257TL27_9BACT1.780e-841.75Uncharacterized protein n=1 Tax=Planctomycetia bac... [more]
UPI00029B18AD4.190e-544.62hypothetical protein n=1 Tax=Schlesneria paludicol... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig96205contigM-pyrifera_M_contig96205:10..318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score68.6
Seed ortholog evalue2e-09
Seed eggNOG ortholog530564.Psta_1808
KEGG rclassRC00005,RC00049
KEGG koko:K02563
KEGG ReactionR05032,R05662
KEGG Pathwayko00550,ko01100,ko01502,ko04112,map00550,map01100,map01502,map04112
Hectar predicted targeting categoryother localisation
EggNOG free text desc.lyase activity
EggNOG OGs2IZN6@203682,COG1413@1,COG1413@2
EC2.4.1.227
COG Functional cat.C
CAZyGT28
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01011
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816877.293643-CDS-M-pyrifera_M_contig96205:9..3181622816877.293643-CDS-M-pyrifera_M_contig96205:9..318Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96205 10..318 -
1692278231.390021-CDS-M-pyrifera_M_contig96205:9..3181692278231.390021-CDS-M-pyrifera_M_contig96205:9..318Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96205 10..318 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig96205.22174.1prot_M-pyrifera_M_contig96205.22174.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig96205 10..318 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig96205.22174.1

>prot_M-pyrifera_M_contig96205.22174.1 ID=prot_M-pyrifera_M_contig96205.22174.1|Name=mRNA_M-pyrifera_M_contig96205.22174.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
LTASVGLNPHVPAVPPMAMSAIGGPAGAAPGGPVATAAAISAQQKTTGEK
VAAIRYLATVDCLCYPEVVHSLLISLDDCAEEVRYEALLALRKSCGSTCC
PAG
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mRNA from alignment at M-pyrifera_M_contig96205:10..318-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig96205.22174.1 ID=mRNA_M-pyrifera_M_contig96205.22174.1|Name=mRNA_M-pyrifera_M_contig96205.22174.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig96205:10..318- (Macrocystis pyrifera P11B4 male)
CTAACTGCTAGCGTTGGGTTGAACCCACATGTTCCTGCAGTGCCGCCGAT
GGCTATGTCCGCGATTGGGGGTCCTGCGGGTGCGGCGCCTGGCGGGCCTG
TTGCGACGGCGGCCGCCATTTCAGCCCAACAGAAGACAACCGGGGAGAAG
GTCGCCGCGATTCGTTATCTCGCCACTGTCGACTGTCTCTGCTATCCAGA
GGTCGTTCATAGTCTGTTGATTTCCTTGGACGACTGCGCCGAAGAGGTTC
GCTATGAGGCTCTGCTGGCACTTCGCAAAAGTTGCGGCTCGACCTGTTGC
CCGGCGGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig96205:10..318-

>mRNA_M-pyrifera_M_contig96205.22174.1 ID=mRNA_M-pyrifera_M_contig96205.22174.1|Name=mRNA_M-pyrifera_M_contig96205.22174.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig96205:10..318- (Macrocystis pyrifera P11B4 male)
CTAACTGCTAGCGTTGGGTTGAACCCACATGTTCCTGCAGTGCCGCCGAT
GGCTATGTCCGCGATTGGGGGTCCTGCGGGTGCGGCGCCTGGCGGGCCTG
TTGCGACGGCGGCCGCCATTTCAGCCCAACAGAAGACAACCGGGGAGAAG
GTCGCCGCGATTCGTTATCTCGCCACTGTCGACTGTCTCTGCTATCCAGA
GGTCGTTCATAGTCTGTTGATTTCCTTGGACGACTGCGCCGAAGAGGTTC
GCTATGAGGCTCTGCTGGCACTTCGCAAAAGTTGCGGCTCGACCTGTTGC
CCGGCGGGTCTAACTGCTAGCGTTGGGTTGAACCCACATGTTCCTGCAGT
GCCGCCGATGGCTATGTCCGCGATTGGGGGTCCTGCGGGTGCGGCGCCTG
GCGGGCCTGTTGCGACGGCGGCCGCCATTTCAGCCCAACAGAAGACAACC
GGGGAGAAGGTCGCCGCGATTCGTTATCTCGCCACTGTCGACTGTCTCTG
CTATCCAGAGGTCGTTCATAGTCTGTTGATTTCCTTGGACGACTGCGCCG
AAGAGGTTCGCTATGAGGCTCTGCTGGCACTTCGCAAAAGTTGCGGCTCG
ACCTGTTGCCCGGCGGGT
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