mRNA_M-pyrifera_M_contig96201.22172.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig96201.22172.1
Unique NamemRNA_M-pyrifera_M_contig96201.22172.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig96201.22172.1 vs. uniprot
Match: A0A351EQ74_9ACTN (Serine hydrolase (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351EQ74_9ACTN)

HSP 1 Score: 98.6 bits (244), Expect = 5.250e-25
Identity = 50/72 (69.44%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    1 GMGVGLGFSVLADAAANRMVASDGEFAWGGAASTAFWVDPSEALAVVFMTQQVPSRQYPLRRELRNVVYGAL 216
            GMG GLGFSV+ D AAN  + S GEFAWGGAASTAFWVDP E +  VFMTQ +PS  YPLRR+LR  VY AL
Sbjct:   49 GMGFGLGFSVVEDPAANGSLCSVGEFAWGGAASTAFWVDPVEEITAVFMTQLLPSSYYPLRRQLRAAVYQAL 120          
BLAST of mRNA_M-pyrifera_M_contig96201.22172.1 vs. uniprot
Match: A0A357FPE0_9CHLR (Uncharacterized protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A357FPE0_9CHLR)

HSP 1 Score: 96.7 bits (239), Expect = 3.470e-24
Identity = 47/73 (64.38%), Postives = 59/73 (80.82%), Query Frame = 1
Query:    1 GMGVGLGFSVLADAAANRMVASDGEFAWGGAASTAFWVDPSEALAVVFMTQQVPSRQYPLRRELRNVVYGALT 219
            G+G GLGFSVL D AA+++  S GE AWGGAASTAFW+DP E +AVVF+TQ +PS  Y +RRELR++VY AL+
Sbjct:   53 GVGFGLGFSVLLDPAASQVSGSKGELAWGGAASTAFWIDPLEDMAVVFLTQLIPSSTYNVRRELRSLVYSALS 125          
BLAST of mRNA_M-pyrifera_M_contig96201.22172.1 vs. uniprot
Match: A0A2D8GDQ8_9ACTN (Serine hydrolase n=8 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8GDQ8_9ACTN)

HSP 1 Score: 102 bits (254), Expect = 3.900e-24
Identity = 51/72 (70.83%), Postives = 56/72 (77.78%), Query Frame = 1
Query:    1 GMGVGLGFSVLADAAANRMVASDGEFAWGGAASTAFWVDPSEALAVVFMTQQVPSRQYPLRRELRNVVYGAL 216
            GMG GLGFS L D A N  V+S GEFAWGGAASTAFWVDP+E +  VFMTQ +PSR YPLRREL+  VY AL
Sbjct:  329 GMGFGLGFSTLVDPARNGAVSSGGEFAWGGAASTAFWVDPAEEITCVFMTQLMPSRSYPLRRELKATVYQAL 400          
BLAST of mRNA_M-pyrifera_M_contig96201.22172.1 vs. uniprot
Match: A0A6L7MP72_9GAMM (Serine hydrolase (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L7MP72_9GAMM)

HSP 1 Score: 94.0 bits (232), Expect = 1.440e-23
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    1 GMGVGLGFSVLADAAANRMVASDGEFAWGGAASTAFWVDPSEALAVVFMTQQVPSRQYPLRRELRNVVYGAL 216
            G+G GLGFSV+ D AA  ++ S GEFAWGGAAST FWVDP E L VVFMTQ +PS  YP+RREL+ + Y AL
Sbjct:   17 GIGFGLGFSVVIDPAAANVLDSPGEFAWGGAASTYFWVDPVEELIVVFMTQLLPSSTYPIRRELKTLAYQAL 88          
BLAST of mRNA_M-pyrifera_M_contig96201.22172.1 vs. uniprot
Match: A0A7Z9IQC8_9CHLR (Class C beta-lactamase-related serine hydrolase n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A7Z9IQC8_9CHLR)

HSP 1 Score: 97.8 bits (242), Expect = 1.590e-23
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 1
Query:    1 GMGVGLGFSVLADAAANRMVASDGEFAWGGAASTAFWVDPSEALAVVFMTQQVPSRQYPLRRELRNVVYGALT 219
            G+G GLGFSVL D AA+++  S GE AWGGAASTAFW+DP E +AVVFMTQ +PS  Y +RRELR++VY AL+
Sbjct:  157 GVGFGLGFSVLLDPAASQVSGSKGELAWGGAASTAFWIDPLEDMAVVFMTQLIPSSTYNVRRELRSLVYSALS 229          
BLAST of mRNA_M-pyrifera_M_contig96201.22172.1 vs. uniprot
Match: A0A1D2TT99_9CAUL (Serine hydrolase n=1 Tax=Phenylobacterium sp. SCN 69-14 TaxID=1660128 RepID=A0A1D2TT99_9CAUL)

HSP 1 Score: 100 bits (248), Expect = 2.910e-23
Identity = 48/72 (66.67%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    1 GMGVGLGFSVLADAAANRMVASDGEFAWGGAASTAFWVDPSEALAVVFMTQQVPSRQYPLRRELRNVVYGAL 216
            G+G GLGF+V+ DAA   +  SDGEF WGGAASTAFWVDP+E LAVVFMTQ +PS  YP+RRELR ++Y A+
Sbjct:  332 GVGFGLGFAVVQDAARTLVPCSDGEFYWGGAASTAFWVDPAEDLAVVFMTQLLPSSAYPIRRELRTLIYSAM 403          
BLAST of mRNA_M-pyrifera_M_contig96201.22172.1 vs. uniprot
Match: A0A0Q8UPB4_9CAUL (Serine hydrolase n=4 Tax=Phenylobacterium TaxID=20 RepID=A0A0Q8UPB4_9CAUL)

HSP 1 Score: 98.2 bits (243), Expect = 1.530e-22
Identity = 48/72 (66.67%), Postives = 57/72 (79.17%), Query Frame = 1
Query:    1 GMGVGLGFSVLADAAANRMVASDGEFAWGGAASTAFWVDPSEALAVVFMTQQVPSRQYPLRRELRNVVYGAL 216
            G+G GLGF+V+ DA    +  SDGEF WGGAASTAFWVDP+E L+VVFMTQ +PS  YP+RRELR +VY AL
Sbjct:  332 GVGFGLGFAVVQDAPRTLVPCSDGEFYWGGAASTAFWVDPAEDLSVVFMTQVLPSSAYPIRRELRTLVYSAL 403          
BLAST of mRNA_M-pyrifera_M_contig96201.22172.1 vs. uniprot
Match: A0A535UXS1_9CHLR (Beta-lactamase family protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535UXS1_9CHLR)

HSP 1 Score: 90.9 bits (224), Expect = 3.220e-22
Identity = 42/72 (58.33%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    1 GMGVGLGFSVLADAAANRMVASDGEFAWGGAASTAFWVDPSEALAVVFMTQQVPSRQYPLRRELRNVVYGAL 216
            G+G GLGFSV+ DA   R + SDGE+AWGGAASTAFWVDP+E +  +F+TQ +PS  +P+R + R +VY AL
Sbjct:   16 GVGFGLGFSVVVDAVKGRSLCSDGEYAWGGAASTAFWVDPAEQITGLFLTQLLPSSTHPIRSQFRTLVYQAL 87          
BLAST of mRNA_M-pyrifera_M_contig96201.22172.1 vs. uniprot
Match: A0A2E4W210_9ACTN (Serine hydrolase n=7 Tax=Actinobacteria TaxID=201174 RepID=A0A2E4W210_9ACTN)

HSP 1 Score: 97.1 bits (240), Expect = 3.850e-22
Identity = 49/72 (68.06%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    1 GMGVGLGFSVLADAAANRMVASDGEFAWGGAASTAFWVDPSEALAVVFMTQQVPSRQYPLRRELRNVVYGAL 216
            GMG GLGFSVL + AAN  + S GEFAWGGAAST FWVDP E +  VFMTQ +PS  YP+RREL+ VVY AL
Sbjct:  329 GMGFGLGFSVLVNPAANAALGSVGEFAWGGAASTRFWVDPLEEITCVFMTQFMPSSHYPIRRELKAVVYQAL 400          
BLAST of mRNA_M-pyrifera_M_contig96201.22172.1 vs. uniprot
Match: UPI0013316AE9 (serine hydrolase n=1 Tax=Roseomonas harenae TaxID=2692566 RepID=UPI0013316AE9)

HSP 1 Score: 97.1 bits (240), Expect = 4.050e-22
Identity = 45/72 (62.50%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    1 GMGVGLGFSVLADAAANRMVASDGEFAWGGAASTAFWVDPSEALAVVFMTQQVPSRQYPLRRELRNVVYGAL 216
            G+G GLGFSV+ D A  ++V + GE+AWGGAASTAFW+DP+E LAV+ MTQ  PS  YP+RRELR++ YGA+
Sbjct:  334 GVGFGLGFSVMLDPARAQIVGTLGEYAWGGAASTAFWIDPAEELAVILMTQLTPSSTYPIRRELRSLTYGAI 405          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig96201.22172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A351EQ74_9ACTN5.250e-2569.44Serine hydrolase (Fragment) n=1 Tax=Acidimicrobiac... [more]
A0A357FPE0_9CHLR3.470e-2464.38Uncharacterized protein n=1 Tax=Dehalococcoidia ba... [more]
A0A2D8GDQ8_9ACTN3.900e-2470.83Serine hydrolase n=8 Tax=Acidimicrobiaceae bacteri... [more]
A0A6L7MP72_9GAMM1.440e-2365.28Serine hydrolase (Fragment) n=1 Tax=Gammaproteobac... [more]
A0A7Z9IQC8_9CHLR1.590e-2365.75Class C beta-lactamase-related serine hydrolase n=... [more]
A0A1D2TT99_9CAUL2.910e-2366.67Serine hydrolase n=1 Tax=Phenylobacterium sp. SCN ... [more]
A0A0Q8UPB4_9CAUL1.530e-2266.67Serine hydrolase n=4 Tax=Phenylobacterium TaxID=20... [more]
A0A535UXS1_9CHLR3.220e-2258.33Beta-lactamase family protein (Fragment) n=1 Tax=C... [more]
A0A2E4W210_9ACTN3.850e-2268.06Serine hydrolase n=7 Tax=Actinobacteria TaxID=2011... [more]
UPI0013316AE94.050e-2262.50serine hydrolase n=1 Tax=Roseomonas harenae TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig96201contigM-pyrifera_M_contig96201:500..721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score96.3
Seed ortholog evalue6.4e-18
Seed eggNOG ortholog882083.SacmaDRAFT_1821
Preferred nameMA20_17095
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Beta-lactamase
EggNOG OGs2H2SY@201174,4DXGA@85010,COG1680@1,COG1680@2
COG Functional cat.V
Best tax levelPseudonocardiales
Best eggNOG OGNA|NA|NA
Exons1
Model size222
Cds size219
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816877.211627-CDS-M-pyrifera_M_contig96201:499..7181622816877.211627-CDS-M-pyrifera_M_contig96201:499..718Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96201 500..718 -
1692278231.3534877-CDS-M-pyrifera_M_contig96201:499..7181692278231.3534877-CDS-M-pyrifera_M_contig96201:499..718Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96201 500..718 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816877.2253702-UTR-M-pyrifera_M_contig96201:718..7211622816877.2253702-UTR-M-pyrifera_M_contig96201:718..721Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig96201 719..721 -
1692278231.3649173-UTR-M-pyrifera_M_contig96201:718..7211692278231.3649173-UTR-M-pyrifera_M_contig96201:718..721Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig96201 719..721 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig96201.22172.1prot_M-pyrifera_M_contig96201.22172.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig96201 500..718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig96201.22172.1

>prot_M-pyrifera_M_contig96201.22172.1 ID=prot_M-pyrifera_M_contig96201.22172.1|Name=mRNA_M-pyrifera_M_contig96201.22172.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
MGVGLGFSVLADAAANRMVASDGEFAWGGAASTAFWVDPSEALAVVFMTQ
QVPSRQYPLRRELRNVVYGALT*
back to top

mRNA from alignment at M-pyrifera_M_contig96201:500..721-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig96201.22172.1 ID=mRNA_M-pyrifera_M_contig96201.22172.1|Name=mRNA_M-pyrifera_M_contig96201.22172.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig96201:500..721- (Macrocystis pyrifera P11B4 male)
GGGATGGGCGTCGGTCTCGGGTTCTCCGTCCTCGCCGACGCCGCCGCCAA CCGGATGGTCGCCAGCGACGGCGAATTCGCCTGGGGTGGCGCGGCCAGCA CTGCGTTCTGGGTCGACCCGAGCGAAGCCCTCGCCGTGGTGTTCATGACC CAGCAGGTGCCGTCGCGGCAATACCCGCTGCGTCGCGAACTGCGCAATGT CGTCTATGGCGCGCTCACCTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig96201:500..721-

>mRNA_M-pyrifera_M_contig96201.22172.1 ID=mRNA_M-pyrifera_M_contig96201.22172.1|Name=mRNA_M-pyrifera_M_contig96201.22172.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig96201:500..721- (Macrocystis pyrifera P11B4 male)
ATGGGCGTCGGTCTCGGGTTCTCCGTCCTCGCCGACGCCGCCGCCAACCG
GATGGTCGCCAGCGACGGCGAATTCGCCTGGGGTGGCGCGGCCAGCACTG
CGTTCTGGGTCGACCCGAGCGAAGCCCTCGCCGTGGTGTTCATGACCCAG
CAGGTGCCGTCGCGGCAATACCCGCTGCGTCGCGAACTGCGCAATGTCGT
CTATGGCGCGCTCACCTGAATGGGCGTCGGTCTCGGGTTCTCCGTCCTCG
CCGACGCCGCCGCCAACCGGATGGTCGCCAGCGACGGCGAATTCGCCTGG
GGTGGCGCGGCCAGCACTGCGTTCTGGGTCGACCCGAGCGAAGCCCTCGC
CGTGGTGTTCATGACCCAGCAGGTGCCGTCGCGGCAATACCCGCTGCGTC
GCGAACTGCGCAATGTCGTCTATGGCGCGCTCACCTGA
back to top