mRNA_M-pyrifera_M_contig9619.22169.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9619.22169.1
Unique NamemRNA_M-pyrifera_M_contig9619.22169.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9619.22169.1 vs. uniprot
Match: D8LDR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDR1_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 1.360e-56
Identity = 103/145 (71.03%), Postives = 120/145 (82.76%), Query Frame = 1 
Query:   37 RHTRTQLFESISGNRAKITRAMNSLRDALRSGDDELAERLKAFIMHLRQRDPQYATQDAMDDAVEKGLFSTAAKLKIKLTEINQNPFRQSLLDVKV-DGDS------DGGGSDDISEDMSWGFDQSFFGKDSDDSDED-EDYDEI 447
            R  RT+LFESI GNR KI RAMNSLRDA+R+GD+ELAERLKAFIMHLR+RDPQ+ATQDAMD+A+E+GLFSTAAKLK+KL EINQNPFR SLLDV   DG        DGG   D SEDMSWGFDQ+FFG++ D+ D+D +DYD+I
Sbjct:   33 RDRRTRLFESIRGNREKIGRAMNSLRDAMRTGDEELAERLKAFIMHLRKRDPQFATQDAMDEALEQGLFSTAAKLKLKLEEINQNPFRHSLLDVSAEDGXXXXXXXXDGG---DTSEDMSWGFDQTFFGEEGDNIDDDPDDYDDI 174
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BLAST of mRNA_M-pyrifera_M_contig9619.22169.1 vs. uniprot
Match: A0A6H5L051_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L051_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 3.370e-55
Identity = 101/147 (68.71%), Postives = 117/147 (79.59%), Query Frame = 1 
Query:   37 RHTRTQLFESISGNRAKITRAMNSLRDALRSGDDELAERLKAFIMHLRQRDPQYATQDAMDDAVEKGLFSTAAKLKIKLTEINQNPFRQSLLDVKVDGDS---------DGGGSDDISEDMSWGFDQSFFGKDSDDSDED-EDYDEI 447
            R  RT+LFESI GNR KI RAMNSLRDA+RSGD+EL ERLKAFIMHLR+RDPQ+ATQDAMD+A+E+GLFSTAAKLK+KL +I QNPFR SLLDV  DG           DGG   D SEDMSWGFDQ+FFG++ D+ D+D +DYD I
Sbjct:   78 RDRRTRLFESIRGNREKIGRAMNSLRDAMRSGDEELVERLKAFIMHLRKRDPQFATQDAMDEALEQGLFSTAAKLKLKLEDIKQNPFRHSLLDVSEDGXXXXXXXXXXXDGG---DTSEDMSWGFDQTFFGEEGDNIDDDPDDYDNI 221
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9619.22169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDR1_ECTSI1.360e-5671.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L051_9PHAE3.370e-5568.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9619contigM-pyrifera_M_contig9619:868..3401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_001650.1
Exons3
Model size450
Cds size450
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9619.22169.1prot_M-pyrifera_M_contig9619.22169.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9619 868..3401 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816877.0881195-CDS-M-pyrifera_M_contig9619:867..10591622816877.0881195-CDS-M-pyrifera_M_contig9619:867..1059Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9619 868..1059 -
1692278231.2925553-CDS-M-pyrifera_M_contig9619:867..10591692278231.2925553-CDS-M-pyrifera_M_contig9619:867..1059Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9619 868..1059 -
1622816877.0989592-CDS-M-pyrifera_M_contig9619:2370..25051622816877.0989592-CDS-M-pyrifera_M_contig9619:2370..2505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9619 2371..2505 -
1692278231.3038151-CDS-M-pyrifera_M_contig9619:2370..25051692278231.3038151-CDS-M-pyrifera_M_contig9619:2370..2505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9619 2371..2505 -
1622816877.1096163-CDS-M-pyrifera_M_contig9619:3278..34011622816877.1096163-CDS-M-pyrifera_M_contig9619:3278..3401Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9619 3279..3401 -
1692278231.3134818-CDS-M-pyrifera_M_contig9619:3278..34011692278231.3134818-CDS-M-pyrifera_M_contig9619:3278..3401Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9619 3279..3401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9619.22169.1

>prot_M-pyrifera_M_contig9619.22169.1 ID=prot_M-pyrifera_M_contig9619.22169.1|Name=mRNA_M-pyrifera_M_contig9619.22169.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=150bp
GGIDGRGGGRRARHTRTQLFESISGNRAKITRAMNSLRDALRSGDDELAE
RLKAFIMHLRQRDPQYATQDAMDDAVEKGLFSTAAKLKIKLTEINQNPFR
QSLLDVKVDGDSDGGGSDDISEDMSWGFDQSFFGKDSDDSDEDEDYDEI*
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mRNA from alignment at M-pyrifera_M_contig9619:868..3401-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9619.22169.1 ID=mRNA_M-pyrifera_M_contig9619.22169.1|Name=mRNA_M-pyrifera_M_contig9619.22169.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2534bp|location=Sequence derived from alignment at M-pyrifera_M_contig9619:868..3401- (Macrocystis pyrifera P11B4 male)
GGTGGTATCGATGGGAGAGGGGGCGGGAGGAGGGCCCGCCATACGCGCAC
CCAGCTGTTCGAAAGCATAAGTGGGAACAGGGCCAAGATCACTCGAGCTA
TGAACAGCCTCCGGGACGCGCTGGTGAGAACGGAGCAGGGCTAGTATGTA
CGCGTACCTTTCTCGGCGCTCGTTTTCGCCACAACGGAGGGGGTTGTCGA
AGGCGAACAACGTATTCCCGGAAAATATTCTCGATTTGACCTTTCCGAAA
ACACCCTATTCGTTATTGGCAATTTTCCTGTTGTGTAAACATCTATTACG
GGGGACCGTAGTAAATAGGACCAAATATTGTTAGTAAAAATCGTGAAATG
TATAGGTTTTTGTGCATACCGTAGGTCCTATTTACTATATTGCTCCGTAA
TAGTGCTGAAAAACGATCACACCCCTGCGCCAAAGTGCTTTACGGGTGTC
ATCGTGGTCTCACCCAGTCGGAATTTTGAGCGCGAGAGGCGTCTCCTCCT
TCCTCTTCCTCCTTCCACGCTTCCTTTCCCTCCCAGCCCTCGCCTGAGAC
GACTGGTGGTTGTCGTTACTACCTGCTGACTGCAGCTGGCTGCTGCTGCC
TGCTGTTGACTGCATCGTACTGCTGCTGACTGCTGCTGCTGCTGCTGAAC
TGCTGAACTGCGCCAAGAGTGGCGATCCCGTACCGGACTGTCGCACGCGC
TCCCGTTCACCCGTTACCACGCTCATACGTTAGTTTCCTCGATCATCCCT
AACAATCCCCCCTACAACGCCGTGCATGTGTTGCTTCTTGTTTTTTTTTC
GGGGGGTTGTGGGTGTGTGTCTGGTTGTGGGTGCTGGTATGCATCTGTAT
GCGGCCGTGGATGTCGGTGTGGGTTGTTTGGGGGTGGGGGGGCCAGAGAT
CGGGTGACGACGAGCTAGCCGAGAGATTGAAAGCTTTCATCATGCACCTC
CGACAGCGAGACCCGCAGTACGCCACGCAAGACGCCATGGATGACGCTGT
CGAAAAGGGCCTGTTCTCCACCGCCGCCAAGGTGCGAAACGCTTTTTTCG
TTTTTTCGTTTTTTCGTTTTTTATCGTTTTGTTTTTGCGTGCGAGTGAGC
GTGCACGGCTCGATTTTCGCCCCTTGCCGCTTGCTCGCCCGTACCGGCTT
TCGCGGCGCCTCGCCGTTCGCGATTGGTGGGCGGGCGGGCGCGCAGCTTG
ATGGCATTAACTTTTTGTTGTTGGGTGGGAGCAGCAGCGGTAGTTTCTTC
AATTTACCTGTCGTTTTGCTTTTCTTCAAAGGGTGGCATGAGCGACGGCA
GTTACTTTACTGTAGTTTTCCCTGTCGGCACCGACGGCATTGCGCACCGC
CCCCGAGCATCATCAGTCTCGCGCATATGAGTTAATGGGCTCGTGGCTTT
TTCGCTCGTGAGTTTTTCATTACCAAGTTTTTTGCACTCGTGGTATTTTT
TTGCGCTTGCGGTGTTTTCGCTATAACGATAGCGATCGTACTTTGTTTTT
GCATCATGCGTGCACGAACGATGACAAGAAAACGAAAGGTTTTAGAGAGT
ACGAACAATCCTGTGTGTATGTTGGTATAGAGATAATGGCATGTTTATAC
GCCTCAAACGCGTGATCGTAGCCCTTGGTGACCAGTGCTTAGAGCCACCG
TCGTGTACAAATGAGAGTGCACTTCGAAGCGAGAGCACGTCGGAGCAGAA
ACCAGACTGCACGAGGATAAGACATTTGCGAAGTACAGTATATGTGTAAC
TCTCAGGCTAGCAGCTAACGGTGTTGTTATTTTTTCGTCCAGGGCCTGCG
TGTCTCGTCTAACGAGAAGCGAGTTTGACTTGGATTGTCTCGCTAGAATC
CAGATCGACTAGTTCGTAAGGAGCGGGGTCTGCTTATGTATATGTATATG
TATATATATATGCGTCAGGCAACCTATGGAACGGGGGCAGCGGGGGCGGT
GAACAGGCGTAACGCGGAACAGGCAGTCCCGCTCGAACCCAGCGTTGGTG
CGTACTTGCGTATCCCAGAGGCAGAGGTTCTCTATTTTCGTTTTGCCGTT
GGAGGCATCGATGCGTGTCTTCCTCTGAAGTACTCCAGCCCCCTCCCTCC
CTCCCTCCCTCCATCCCTGCGTCCCCCCGTGCCTCCCTCTCATCCTCTCT
TCCTCCCTCCCTCTCTATATATATCCCCCTCTTCCTCTCTCTTTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCTCCCCCGCCCCCACC
CTTCCCGTCGAATGCTAATTAATTCTGTGTTTCCGTCCGTGTTGTGCACT
CGCTCCGTCGGGAACACCGGAAACCTTTTGCCGCAAGAAAAGTTGAAGAT
AAAGCTAACGGAAATAAACCAGAACCCGTTCAGGCAAAGCCTGTTGGATG
TGAAGGTAGACGGCGACAGCGACGGCGGTGGAAGCGATGATATTTCGGAA
GACATGAGCTGGGGTTTCGATCAGTCGTTCTTCGGGAAGGACAGCGACGA
TTCGGACGAAGACGAGGACTACGACGAAATTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9619:868..3401-

>mRNA_M-pyrifera_M_contig9619.22169.1 ID=mRNA_M-pyrifera_M_contig9619.22169.1|Name=mRNA_M-pyrifera_M_contig9619.22169.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig9619:868..3401- (Macrocystis pyrifera P11B4 male)
GGTGGTATCGATGGGAGAGGGGGCGGGAGGAGGGCCCGCCATACGCGCAC
CCAGCTGTTCGAAAGCATAAGTGGGAACAGGGCCAAGATCACTCGAGCTA
TGAACAGCCTCCGGGACGCGCTGGGTGGTATCGATGGGAGAGGGGGCGGG
AGGAGGGCCCGCCATACGCGCACCCAGCTGTTCGAAAGCATAAGTGGGAA
CAGGGCCAAGATCACTCGAGCTATGAACAGCCTCCGGGACGCGCTGAGAT
CGGGTGACGACGAGCTAGCCGAGAGATTGAAAGCTTTCATCATGCACCTC
CGACAGCGAGACCCGCAGTACGCCACGCAAGACGCCATGGATGACGCTGT
CGAAAAGGGCCTGTTCTCCACCGCCGCCAAGAGATCGGGTGACGACGAGC
TAGCCGAGAGATTGAAAGCTTTCATCATGCACCTCCGACAGCGAGACCCG
CAGTACGCCACGCAAGACGCCATGGATGACGCTGTCGAAAAGGGCCTGTT
CTCCACCGCCGCCAAGTTGAAGATAAAGCTAACGGAAATAAACCAGAACC
CGTTCAGGCAAAGCCTGTTGGATGTGAAGGTAGACGGCGACAGCGACGGC
GGTGGAAGCGATGATATTTCGGAAGACATGAGCTGGGGTTTCGATCAGTC
GTTCTTCGGGAAGGACAGCGACGATTCGGACGAAGACGAGGACTACGACG
AAATTTGATTGAAGATAAAGCTAACGGAAATAAACCAGAACCCGTTCAGG
CAAAGCCTGTTGGATGTGAAGGTAGACGGCGACAGCGACGGCGGTGGAAG
CGATGATATTTCGGAAGACATGAGCTGGGGTTTCGATCAGTCGTTCTTCG
GGAAGGACAGCGACGATTCGGACGAAGACGAGGACTACGACGAAATTTGA
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