mRNA_M-pyrifera_M_contig96188.22168.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig96188.22168.1 vs. uniprot
Match: UPI0014741807 (Ig-like domain repeat protein n=1 Tax=Actinomadura oligospora TaxID=111804 RepID=UPI0014741807) HSP 1 Score: 102 bits (253), Expect = 5.040e-22 Identity = 72/174 (41.38%), Postives = 85/174 (48.85%), Query Frame = 1 Query: 7 WGDNSYGQLGCGSLREKKRACPAKVVFPAASVPDSMVEQVFAGWNHCIAIRKPD-VLAWGRGDFGQLGDGGREQKVPTPTMAHMNGSVRLPTSPNILQLTQPQTVVSFAVGSEHCLAVTADESGSRLLAWGWNDHGQLGVGDEANRYEPTIVSLPSDLKPTQVFAGNGGQSFAV 525 WG N GQLG G+ R P V PA MV QV AG +H +A+ +L WGR GQLGDG + TP VRLPT TV + GS H LA+ +D R+LAWG N G+LGVG ANR P V +P K T + AG QSFAV Sbjct: 78 WGRNDVGQLGDGT--STLRTTPVFVRLPAGV----MVTQVAAGGDHSLALTSDGRLLTWGRNTSGQLGDGTATARA-TPVF------VRLPTG---------VTVTRVSGGSYHSLALASD---GRVLAWGDNVFGELGVGGRANRETPVFVRMPKGTKATAIDAGRNSQSFAV 226
BLAST of mRNA_M-pyrifera_M_contig96188.22168.1 vs. uniprot
Match: A0A7K0CB25_9ACTN (Uncharacterized protein n=1 Tax=Streptomyces smaragdinus TaxID=2585196 RepID=A0A7K0CB25_9ACTN) HSP 1 Score: 100 bits (249), Expect = 2.600e-21 Identity = 66/174 (37.93%), Postives = 88/174 (50.57%), Query Frame = 1 Query: 7 WGDNSYGQLGCGSLREKKRACPAKVVFPAASVPDSMVEQVFAGWNHCIAIRKPD-VLAWGRGDFGQLGDGGREQKVPTPTMAHMNGSVRLPTSPNILQLTQPQTVVSFAVGSEHCLAVTADESGSRLLAWGWNDHGQLGVGDEANRYEPTIVSLPSDLKPTQVFAGNGGQSFAV 525 WG+N+YGQLG ++ E+ A V P P V + AG H +A+ VLAWGR D GQLGDG T H+ V LP + T ++ G +H LA+T+D R+L+WGWN +GQLG G +R +P V LP + T + AG G S AV Sbjct: 101 WGNNAYGQLGDNTVTERHTA--GYVDLP----PGVTVTAIAAGDQHSLALTSDGRVLAWGRNDLGQLGDG-------TTVERHLPVYVDLPPGVTV-------TAIAAGTGGQHSLALTSD---GRVLSWGWNAYGQLGDGTTTDRPDPEYVHLPDGVTITAIGAGEG-HSLAV 250
BLAST of mRNA_M-pyrifera_M_contig96188.22168.1 vs. uniprot
Match: UPI0019C9834F (Uncharacterized protein n=2 Tax=Actinomadura sp. RB99 TaxID=2691577 RepID=UPI0019C9834F) HSP 1 Score: 97.1 bits (240), Expect = 4.230e-20 Identity = 60/176 (34.09%), Postives = 86/176 (48.86%), Query Frame = 1 Query: 1 WTWGDNSYGQLGCGSLREKKRACPAKVVFPAASVPDSMVEQVFAGWNHCIAIRKPD-VLAWGRGDFGQLGDGGREQKVPTPTMAHMNGSVRLPTSPNILQLTQPQTVVSFAVGSEHCLAVTADESGSRLLAWGWNDHGQLGVGDEANRYEPTIVSLPSDLKPTQVFAGNGGQSFAV 525 W WG+N GQLG G+ P +V PA + V + G +H +A+ +LAWG DFGQ+GDG ++ +P + L T+ + G+ H LAVT S R+LAWG+N+ GQLG+G+ + P V LP D++ T V AG S A+ Sbjct: 105 WAWGENPNGQLGDGTTNRSH--VPVRVALPAGAT----VTAIATGDDHTLALTSTGRLLAWGYNDFGQIGDGSTTDRL----------------TPVAVDLPSGTTITAIGAGAGHSLAVT---SAGRVLAWGYNNTGQLGIGNNNDSSVPVQVPLPEDVRFTAV-AGGSAHSLAL 254
BLAST of mRNA_M-pyrifera_M_contig96188.22168.1 vs. uniprot
Match: A0A6J1SJR2_FRAOC (secretion-regulating guanine nucleotide exchange factor-like n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1SJR2_FRAOC) HSP 1 Score: 95.1 bits (235), Expect = 7.990e-20 Identity = 57/175 (32.57%), Postives = 87/175 (49.71%), Query Frame = 1 Query: 7 WGDNSYGQLGCGSLREKKRACPAKVVFPAASVPDSMVEQVFAGWNHCIAIR-KPDVLAWGRGDFGQLGDGGREQKVP-TPTMAHMNGSVRLPTSPNILQLTQPQTVVSFAVGSEHCLAVTADESGSRLLAWGWNDHGQLGVGDEANRYEPTIVSLPSDLKPTQVFAGNGGQSFAV 525 WGDN +GQLG S + P ++ A + V+AGW H + + K +V+ WGR +GQL + GR + V PT+ ++ ++ AVGSEH + +T E+GS +++WGWN+HG GVG + N EPT++ K + G SFA+ Sbjct: 217 WGDNRFGQLGLDSTVQPVVYEPQELSLSALTGVKGDPSSVYAGWTHSVLLTDKGEVVNWGRNTYGQLSNNGRRRAVSWNPTLLSIDERIK-----------------QIAVGSEHNIILT--ETGS-IMSWGWNEHGNCGVGTQENVLEPTLIQAGLQNKANLIGTG-ACHSFAI 370
BLAST of mRNA_M-pyrifera_M_contig96188.22168.1 vs. uniprot
Match: A0A438M794_9ACTN (Alpha-tubulin suppressor-like RCC1 family protein n=1 Tax=Nonomuraea polychroma TaxID=46176 RepID=A0A438M794_9ACTN) HSP 1 Score: 95.1 bits (235), Expect = 1.960e-19 Identity = 61/177 (34.46%), Postives = 85/177 (48.02%), Query Frame = 1 Query: 1 WTWGDNSYGQLGCGSLREKKRACPAKVVFPAASVPDSMVEQVFAGWNHCIAIRKP-DVLAWGRGDFGQLGDGGR-EQKVPTPTMAHMNGSVRLPTSPNILQLTQPQTVVSFAVGSEHCLAVTADESGSRLLAWGWNDHGQLGVGDEANRYEPTIVSLPSDLKPTQVFAGNGGQSFAV 525 W WG+N GQLG G+ P +V PA + V + G +H +A+ +LAWG DFGQ+GDG ++ P P + L T+ + G+ H LAVT S R+L+WG+N+ GQLG+GD P V LP+D+ T V AG S A+ Sbjct: 115 WAWGENLNGQLGDGTTNSSP--VPVRVALPAGTT----VTAIATGDDHTLALTSTGSLLAWGYNDFGQVGDGTTIDRNAPVP-----------------VALRAGTTITAIGAGAGHSLAVT---STGRVLSWGYNNTGQLGIGDTTGSSRPAEVPLPADVTITAV-AGGSAHSLAL 264
BLAST of mRNA_M-pyrifera_M_contig96188.22168.1 vs. uniprot
Match: A0A372JIR2_9ACTN (Cell wall anchor protein n=1 Tax=Actinomadura logoneensis TaxID=2293572 RepID=A0A372JIR2_9ACTN) HSP 1 Score: 92.4 bits (228), Expect = 1.730e-18 Identity = 66/176 (37.50%), Postives = 82/176 (46.59%), Query Frame = 1 Query: 4 TWGDNSYGQLGCGSLREKKRACPAKVVFPAASVPDSMVEQVFAGWNHCIAIRKPD-VLAWGRGDFGQLGDGGRE-QKVPTPTMAHMNGSVRLPTSPNILQLTQPQTVVSFAVGSEHCLAVTADESGSRLLAWGWNDHGQLGVGDEANRYEPTIVSLPSDLKPTQVFAGNGGQSFAV 525 TWG N +GQLG S P + PA + V+QV G+ +A+ V AWG GQLGDG +VP P V LP TV + A G +H LA+T S RLLAWG+ND GQ+G G +R P V LP+ T + AG G S AV Sbjct: 42 TWGRNQFGQLGNDSTEHSN--VPVTALLPAGT----SVKQVSGGYGFSVALTSDGRVWAWGENPNGQLGDGTTNGSRVPVP--------VALPAG---------TTVTALATGDDHTLALT---STGRLLAWGYNDFGQVGDGSTTDRLAPVAVDLPNGTTITAIGAG-AGHSLAV 190
BLAST of mRNA_M-pyrifera_M_contig96188.22168.1 vs. uniprot
Match: A0A1S3JZ09_LINUN (secretion-regulating guanine nucleotide exchange factor isoform X1 n=3 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JZ09_LINUN) HSP 1 Score: 91.3 bits (225), Expect = 2.050e-18 Identity = 62/179 (34.64%), Postives = 81/179 (45.25%), Query Frame = 1 Query: 7 WGDNSYGQLGCGSLREKKRACPAKVVFPAASVPDSMVEQVFAGWNHCIAIRKP-DVLAWGRGDFGQLG----DGGREQKVPTPTMAHMNGSVRLPTSPNILQLTQPQTVVSFAVGSEHCLAVTADESGSRLLAWGWNDHGQLGVGDEANRYEPTIVSLPSDLKPTQVFAGNGGQSFAVC 528 WG N YGQ + + P V P + V QV++GW H +A+ V +WGR D+GQLG G PTP + + P + QL GSEH LA+TAD S++L WGWN+HG G GDE N P V + + AG G S A+C Sbjct: 222 WGCNKYGQCALDPHTQPQVNRPHCV--PQKVFRNKKVCQVYSGWTHLLAVTDDGQVFSWGRADYGQLGRPVQSGQLCDFTPTP----------IESIPQVSQL---------CCGSEHSLAITAD---SKVLTWGWNEHGICGTGDEINVMTPQTVKTLDTFRTVLIGAG-AGHSMALC 375
BLAST of mRNA_M-pyrifera_M_contig96188.22168.1 vs. uniprot
Match: UPI000371A944 (Ig-like domain repeat protein n=1 Tax=Salinispora arenicola TaxID=168697 RepID=UPI000371A944) HSP 1 Score: 91.7 bits (226), Expect = 2.780e-18 Identity = 69/174 (39.66%), Postives = 83/174 (47.70%), Query Frame = 1 Query: 7 WGDNSYGQLGCGSLREKKRACPAKVVFPAASVPDSMVEQVFAGWNHCIAIRKPD-VLAWGRGDFGQLGDGGREQKVPTPTMAHMNGSVRLPTSPNILQLTQPQTVVSFAVGSEHCLAVTADESGSRLLAWGWNDHGQLGVGDEANRYEPTIVSLPSDLKPTQVFAGNGGQSFAV 525 WG N+ GQLG G+ + P V PA + V V AG H +A+ VLAWG +FGQLGDG T T + +V LP TV + A G H +AVT S +LAWG+ND GQLG G NR P V LP+ T V AG G S AV Sbjct: 169 WGANTDGQLGDGTTTSS--STPVAVDVPAGTT----VTAVAAGGAHSVAVTSAGTVLAWGNNNFGQLGDG-------TTTDSSTPVAVDLPAG---------TTVTAVAAGKFHSVAVT---SAGTVLAWGFNDSGQLGDGTTTNRSTPVAVDLPAGTTVTAVAAG-GFHSVAV 316
BLAST of mRNA_M-pyrifera_M_contig96188.22168.1 vs. uniprot
Match: A0A1G7BCI0_9ACTN (Alpha-tubulin suppressor n=1 Tax=Glycomyces harbinensis TaxID=58114 RepID=A0A1G7BCI0_9ACTN) HSP 1 Score: 91.7 bits (226), Expect = 2.990e-18 Identity = 63/180 (35.00%), Postives = 81/180 (45.00%), Query Frame = 1 Query: 4 TWGDNSYGQLGCGSLREKKRACPAKVVFPAASVPDSMVEQVFAGWNHCIAIRKPD-VLAWGRGDFGQLGDGGREQKVPTPTMAHMNGSVRLPTSPNILQLTQPQTVVSFAVGSEHCLAVTADESGSRLLAWGWNDHGQLGVGDEANRYEPTIVSLPSDLKPTQVFAGNGGQSFAVCMDEV 540 +WG N YGQLG GSL P V P + V V G+ IA+ VLAWG+ D GQLG+ S T P ++L + TV + +VG +H LA+T S ++LAWG+N+ GQLG G P V LPS T + AG G EV Sbjct: 15 SWGRNQYGQLGNGSLNSAGEWVPGSVALPDGA----SVTAVGGGYGFSIALTSAGAVLAWGQNDVGQLGE----------------DSFTNSTEPVNVELPEGTTVTAISVGDDHVLALT---STGQVLAWGYNEWGQLGNGTNTESGLPVEVDLPSGTTVTAIAAGAGHSLALTSTGEV 171
BLAST of mRNA_M-pyrifera_M_contig96188.22168.1 vs. uniprot
Match: A0A7K0C9E3_9ACTN (Uncharacterized protein n=1 Tax=Streptomyces smaragdinus TaxID=2585196 RepID=A0A7K0C9E3_9ACTN) HSP 1 Score: 90.9 bits (224), Expect = 5.840e-18 Identity = 59/167 (35.33%), Postives = 81/167 (48.50%), Query Frame = 1 Query: 4 TWGDNSYGQLGCGSLREKKRACPAKVVFPAASVPDSMVEQVFAGWNHCIAIRKPD-VLAWGRGDFGQLGDGGREQKVPTPTMAHMNGSVRLPTSPNILQLTQPQTVVSFAVGSEHCLAVTADESGSRLLAWGWNDHGQLGVGDEANRYEPTIVSLPSDLKPTQVFAG 501 +WG N G LG G+ + R+ P V P P + Q +G +H +A+ VLAWG +GQ+GD + TP M G+ T+ A G E LA+T+D R+LAWGWN HGQLG G NR+ P V +P+D+ T + AG Sbjct: 39 SWGYNRSGSLGDGTTDQ--RSLPGNVDLP----PGVTITQFASGDSHSLALTTDGRVLAWGWNYYGQVGDDTTINRS-TPVEVDMQGA----------------TITEVAAGQEFSLALTSDH---RVLAWGWNGHGQLGDGTYINRHTPVEVHVPADVTVTHIDAG 179 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig96188.22168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig96188.22168.1 >prot_M-pyrifera_M_contig96188.22168.1 ID=prot_M-pyrifera_M_contig96188.22168.1|Name=mRNA_M-pyrifera_M_contig96188.22168.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=184bp WTWGDNSYGQLGCGSLREKKRACPAKVVFPAASVPDSMVEQVFAGWNHCIback to top mRNA from alignment at M-pyrifera_M_contig96188:2..608+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig96188.22168.1 ID=mRNA_M-pyrifera_M_contig96188.22168.1|Name=mRNA_M-pyrifera_M_contig96188.22168.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=607bp|location=Sequence derived from alignment at M-pyrifera_M_contig96188:2..608+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig96188:2..608+ >mRNA_M-pyrifera_M_contig96188.22168.1 ID=mRNA_M-pyrifera_M_contig96188.22168.1|Name=mRNA_M-pyrifera_M_contig96188.22168.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1104bp|location=Sequence derived from alignment at M-pyrifera_M_contig96188:2..608+ (Macrocystis pyrifera P11B4 male)back to top |