mRNA_M-pyrifera_M_contig96180.22165.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig96180.22165.1
Unique NamemRNA_M-pyrifera_M_contig96180.22165.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig96180.22165.1 vs. uniprot
Match: UPI0003A678F1 (hypothetical protein n=1 Tax=Gracilimonas tropica TaxID=454600 RepID=UPI0003A678F1)

HSP 1 Score: 337 bits (863), Expect = 1.130e-106
Identity = 166/229 (72.49%), Postives = 189/229 (82.53%), Query Frame = 1
Query:   31 KIPITVKNNIPGTPQVFGVPIPKGELFSPDHVRVLNSSGNEIPSQITEVSTWAPADNSIKWLWVFFFTEDGDSYSVEYGNEVRNGRMYDERILVNNNQRPTGEVEVNTGPLRFTVEKGLGGGFQRSPAGSGFLDKVEFDIAGDGFDEGDVIATGTAGRASFLDILDKAGLDPSNAVVLRTVKEKGTGPLHAIIRVEGE*RYSRDNNKTQQSTTKKNPTPGKTYQKAKHT 717
            KIP+TV+NN+ GTPQVFGVPIPKGEL+SPDHVRVLNSSG+EIPSQ+T+V+TW PAD SIKWLWVFFFTE+GD+Y VEYG  VRN R YD+ + V NNQRPTGEV VNTGPLRFTVEKG GGGF  +PAGSGFLDKVE D+ G+GF+E DVIATG  GR+SFLDI+D  GLD S AVV RTVKE GTGPLHAIIRVEGE  Y RD+N T    T+ +   GK+Y K +HT
Sbjct:   33 KIPVTVENNVAGTPQVFGVPIPKGELYSPDHVRVLNSSGDEIPSQVTKVTTWEPADESIKWLWVFFFTEEGDTYEVEYGENVRNAREYDQILTVKNNQRPTGEVIVNTGPLRFTVEKGEGGGFFNAPAGSGFLDKVELDVDGNGFEESDVIATGEPGRSSFLDIIDNIGLDKSKAVVTRTVKELGTGPLHAIIRVEGEYHYGRDDNNTAPFITRIHAYAGKSYIKVQHT 261          
BLAST of mRNA_M-pyrifera_M_contig96180.22165.1 vs. uniprot
Match: A0A2E6N3M7_9BACT (Uncharacterized protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A2E6N3M7_9BACT)

HSP 1 Score: 317 bits (813), Expect = 2.290e-99
Identity = 153/238 (64.29%), Postives = 189/238 (79.41%), Query Frame = 1
Query:    4 GSSFASDATKIPITVKNNIPGTPQVFGVPIPKGELFSPDHVRVLNSSGNEIPSQITEVSTWAPADNSIKWLWVFFFTEDGDSYSVEYGNEVRNGRMYDERILVNNNQRPTGEVEVNTGPLRFTVEKGLGGGFQRSPAGSGFLDKVEFDIAGDGFDEGDVIATGTAGRASFLDILDKAGLDPSNAVVLRTVKEKGTGPLHAIIRVEGE*RYSRDNNKTQQSTTKKNPTPGKTYQKAKHT 717
            G    S +  IP+ VK+N+P TPQ+ G+PIPKG L+S D+VRVLN+ G EIPSQIT+VSTW PAD SIKW+WVFFF+E+ D+Y+VEYG+++RNGR+YD+ + VNNNQRPTGEVEVNTGPLRFT+EKGLGGG+  +P  SGF+DKVE D+ GDGF+E DVIATG   RA+FLDILD AGLDPS A V RTVKE GTGPLHAIIRVEGE  Y R++N +     + +   GK+Y + +HT
Sbjct:   15 GVQAQSTSYSIPVEVKDNVPDTPQLLGIPIPKGTLYSSDYVRVLNAYGQEIPSQITKVSTWEPADASIKWIWVFFFSEEEDTYTVEYGDDIRNGRLYDKVLTVNNNQRPTGEVEVNTGPLRFTIEKGLGGGYLNAPPSSGFMDKVELDLEGDGFEEDDVIATGAPQRANFLDILDDAGLDPSKAAVTRTVKELGTGPLHAIIRVEGEYHYEREDNNSAPFVMRIHAYAGKSYVRVQHT 252          
BLAST of mRNA_M-pyrifera_M_contig96180.22165.1 vs. uniprot
Match: A0A523J066_9BACT (Uncharacterized protein n=2 Tax=Caldithrix sp. TaxID=1962856 RepID=A0A523J066_9BACT)

HSP 1 Score: 251 bits (640), Expect = 2.760e-74
Identity = 131/239 (54.81%), Postives = 159/239 (66.53%), Query Frame = 1
Query:    1 LGSSFASDATKIPITVKNNIPGTPQVFGVPIPKGELFSPDHVRVLNSSGNEIPSQITEVSTWAPADNSIKWLWVFFFTEDGDSYSVEYGNEVRNGRMYDERILVNNNQRPTGEVEVNTGPLRFTVEKGLGGGFQRSPAGSGFLDKVEFDIAGDGFDEGDVIATGTAGRASFLDILDKAGLDPSNAVVLRTVKEKGTGPLHAIIRVEGE*RYSRDNNKTQQSTTKKNPTPGKTYQKAKHT 717
            +GSS A  +  +P+TV   I G P   G+P PKG L SPDHVR+LN+ G EIPSQITEV+TW PAD SIKW+WVFFF ED D Y +EYG  V    +  ERI VNNNQR  G + ++TGPLRF + KG          G+GFLDKVE D+AG+GFDE D+IA G  GR SFLDILD  GLD S AV+ R   EKG+GPLH IIR EGE +YSRD+N       + +   GK+Y +  +T
Sbjct:   16 VGSSLAQSS--LPLTVNQPIAGAPLTLGIPFPKGILHSPDHVRILNAKGKEIPSQITEVTTWMPADESIKWIWVFFFCEDSDRYFLEYGKNVVRAPIPSERIAVNNNQRANGYLTISTGPLRFRINKG----------GNGFLDKVELDLAGNGFDENDLIAEGPEGRGSFLDILDDIGLDKSKAVIKRNWIEKGSGPLHMIIRAEGEYQYSRDDNNPSPFVLRVHAYAGKSYVRVLYT 242          
BLAST of mRNA_M-pyrifera_M_contig96180.22165.1 vs. uniprot
Match: UPI0014215AE7 (hypothetical protein n=1 Tax=Rhodocaloribacter litoris TaxID=2558931 RepID=UPI0014215AE7)

HSP 1 Score: 247 bits (630), Expect = 8.010e-73
Identity = 126/231 (54.55%), Postives = 157/231 (67.97%), Query Frame = 1
Query:   25 ATKIPITVKNNIPGTPQVFGVPIPKGELFSPDHVRVLNSSGNEIPSQITEVSTWAPADNSIKWLWVFFFTEDGDSYSVEYGNEVRNGRMYDERILVNNNQRPTGEVEVNTGPLRFTVEKGLGGGFQRSPAGSGFLDKVEFDIAGDGFDEGDVIATGTAGRASFLDILDKAGLDPSNAVVLRTVKEKGTGPLHAIIRVEGE*RYSRDNNKTQQSTTKKNPTPGKTYQKAKHT 717
            A ++PI V+  + G P   GVP PKG L SPDHVRVL++ G EIPSQITEV+TW P D S+KW+WVFFF ED + Y +EYG +VR   +    + V NNQR  G  EV+TGPLRF ++ G          G+GF   VE D+ GDGF+E DVIATG AGR SFLD+LD AG+D S+AVV RTVKEKG+GPLH I+RVEG  RY R++N+     T+ +   GKTY +  HT
Sbjct:   20 AERVPIRVEKAVAGAPITLGVPFPKGTLHSPDHVRVLSTDGREIPSQITEVTTWEPVDPSVKWIWVFFFAEDSEDYVLEYGPDVRRAPLTGPTLRVVNNQRSYGFAEVDTGPLRFRIDNG----------GNGFFKTVELDLEGDGFEEDDVIATGPAGRGSFLDLLDDAGVDSSHAVVTRTVKEKGSGPLHTILRVEGVYRYGREDNREAPFITRIHAYAGKTYVRVLHT 240          
BLAST of mRNA_M-pyrifera_M_contig96180.22165.1 vs. uniprot
Match: A0A7C2CFZ8_9BACT (Uncharacterized protein n=1 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A7C2CFZ8_9BACT)

HSP 1 Score: 240 bits (613), Expect = 1.750e-70
Identity = 126/234 (53.85%), Postives = 154/234 (65.81%), Query Frame = 1
Query:   16 ASDATKIPITVKNNIPGTPQVFGVPIPKGELFSPDHVRVLNSSGNEIPSQITEVSTWAPADNSIKWLWVFFFTEDGDSYSVEYGNEVRNGRMYDERILVNNNQRPTGEVEVNTGPLRFTVEKGLGGGFQRSPAGSGFLDKVEFDIAGDGFDEGDVIATGTAGRASFLDILDKAGLDPSNAVVLRTVKEKGTGPLHAIIRVEGE*RYSRDNNKTQQSTTKKNPTPGKTYQKAKHT 717
            A   +++ I ++ +  G P +FG+P PKG L SPDHVRVL   G EIPSQITEVSTWAPAD S+KW+WVFFF E  D Y VEYG  VR      +R+ V NNQ   G  EV TGPLRF V KG GG          FL +V+ D+ G+GFDE DVIA G  GR SFLD+LD AG+DPS AV+ RTV EKG+GPLHAI+R+EGE RY+R +N       + +   GK+Y +  HT
Sbjct:   13 APSPSRVRIRIERSSEGAPILFGLPFPKGALHSPDHVRVLAPDGREIPSQITEVSTWAPADESVKWIWVFFFAEASDEYIVEYGPTVRRAWPPPQRLTVINNQGERGFAEVTTGPLRFLVRKGEGG----------FLHRVQLDVDGNGFDEADVIAEGPIGRGSFLDLLDDAGVDPSRAVITRTVVEKGSGPLHAILRIEGEYRYARADNPAAPFVMRIHAYAGKSYLRVLHT 236          
BLAST of mRNA_M-pyrifera_M_contig96180.22165.1 vs. uniprot
Match: A0A2P6BZX9_9BACT (Uncharacterized protein n=1 Tax=Salinibacter sp. 10B TaxID=1923971 RepID=A0A2P6BZX9_9BACT)

HSP 1 Score: 236 bits (603), Expect = 5.820e-69
Identity = 122/234 (52.14%), Postives = 156/234 (66.67%), Query Frame = 1
Query:   16 ASDATKIPITVKNNIPGTPQVFGVPIPKGELFSPDHVRVLNSSGNEIPSQITEVSTWAPADNSIKWLWVFFFTEDGDSYSVEYGNEVRNGRMYDERILVNNNQRPTGEVEVNTGPLRFTVEKGLGGGFQRSPAGSGFLDKVEFDIAGDGFDEGDVIATGTAGRASFLDILDKAGLDPSNAVVLRTVKEKGTGPLHAIIRVEGE*RYSRDNNKTQQSTTKKNPTPGKTYQKAKHT 717
            A+ + +I ITV +  PG P   G+P PKGEL SP+H+RVL S G  IPSQIT V++WAPAD+S+KW+WVFFF  DGDSY +EYG  V+   +  +R+ V NNQRP G  E+ TGPLR  +EKG GG F         L++V FD  GDGF+  D +AT   GR S+LD+LD AGLD S A V +T KEKG+GPLHAI+R+EG   YSRD+N +    T+ +   GK Y +  HT
Sbjct:   25 ATASDQIRITVDHVQPGAPITVGLPFPKGELQSPEHMRVLTSDGTPIPSQITPVTSWAPADSSLKWVWVFFFATDGDSYQLEYGPNVQRAPIMGDRLRVKNNQRPYGHTEITTGPLRLRIEKGSGGSF---------LEEVFFDAEGDGFEADDRMATEPDGRGSYLDLLDAAGLDSSRATVTQTYKEKGSGPLHAILRIEGTYHYSRDDNNSAPFVTRIHAYAGKPYLRVLHT 249          
BLAST of mRNA_M-pyrifera_M_contig96180.22165.1 vs. uniprot
Match: A0A7C2XVE7_9BACT (Uncharacterized protein n=1 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A7C2XVE7_9BACT)

HSP 1 Score: 233 bits (595), Expect = 6.220e-69
Identity = 127/237 (53.59%), Postives = 151/237 (63.71%), Query Frame = 1
Query:    7 SSFASDATKIPITVKNNIPGTPQVFGVPIPKGELFSPDHVRVLNSSGNEIPSQITEVSTWAPADNSIKWLWVFFFTEDGDSYSVEYGNEVRNGRMYDERILVNNNQRPTGEVEVNTGPLRFTVEKGLGGGFQRSPAGSGFLDKVEFDIAGDGFDEGDVIATGTAGRASFLDILDKAGLDPSNAVVLRTVKEKGTGPLHAIIRVEGE*RYSRDNNKTQQSTTKKNPTPGKTYQKAKHT 717
            SSF S   ++ I ++    G P + G+P PKG L SP+HVRVL   G EIPSQITEVSTWAPAD S+KW+WVFFF E  D Y VEYG  VR      +R+ V NNQ   G  EV TGPLRF V KG GG          FL +V+ D  G+GFDE DVIA G  GR SFLD+LD AG+DPS AV+ RTV EKG+GPLH I+RVEGE RY+R +N       + +   GK Y +  HT
Sbjct:   27 SSFPS---RVRIRIERPREGAPILLGLPFPKGALHSPEHVRVLTPEGREIPSQITEVSTWAPADESVKWIWVFFFAEASDEYLVEYGPTVRRAWPPPQRVTVINNQGERGFAEVTTGPLRFLVRKGEGG----------FLHRVQLDTEGNGFDESDVIAEGPLGRGSFLDLLDDAGVDPSRAVITRTVVEKGSGPLHVIVRVEGEYRYARADNPAAPFVMRIHAYAGKPYIRVLHT 250          
BLAST of mRNA_M-pyrifera_M_contig96180.22165.1 vs. uniprot
Match: A0A2H5VJQ9_9BACT (Uncharacterized protein n=3 Tax=Bacteria TaxID=2 RepID=A0A2H5VJQ9_9BACT)

HSP 1 Score: 227 bits (579), Expect = 1.480e-65
Identity = 122/231 (52.81%), Postives = 146/231 (63.20%), Query Frame = 1
Query:   25 ATKIPITVKNNIPGTPQVFGVPIPKGELFSPDHVRVLNSSGNEIPSQITEVSTWAPADNSIKWLWVFFFTEDGDSYSVEYGNEVRNGRMYDERILVNNNQRPTGEVEVNTGPLRFTVEKGLGGGFQRSPAGSGFLDKVEFDIAGDGFDEGDVIATGTAGRASFLDILDKAGLDPSNAVVLRTVKEKGTGPLHAIIRVEGE*RYSRDNNKTQQSTTKKNPTPGKTYQKAKHT 717
            A+++ I V+    G P +FG+P PKG L SPDHVRVL   G EIPSQITEVSTW PAD S+KW WVFFF E    Y VEYG  VR       R+ + NNQ   G VEV TGPLR    KG GG          FL +V+ D+ G+GF+E DVIA G  GR SFLD+LD AGLDPS A + RTV EKG+GPLHAI+R+EGE RY+R +N       + +   GK Y +  HT
Sbjct:   30 ASRVRIRVERPQEGAPILFGLPFPKGALRSPDHVRVLTPDGREIPSQITEVSTWEPADASVKWAWVFFFAEAAAEYFVEYGPGVRRTASGSARVSIVNNQGERGFVEVTTGPLRILARKGEGG----------FLHRVQLDLEGNGFEESDVIAEGPVGRGSFLDLLDDAGLDPSRAFITRTVVEKGSGPLHAIVRIEGEYRYARADNNPAPFVMRLHAYAGKPYLRILHT 250          
BLAST of mRNA_M-pyrifera_M_contig96180.22165.1 vs. uniprot
Match: A0A6I7QFZ9_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6I7QFZ9_9BACT)

HSP 1 Score: 220 bits (561), Expect = 4.710e-63
Identity = 118/228 (51.75%), Postives = 146/228 (64.04%), Query Frame = 1
Query:   34 IPITVKNNIPGTPQVFGVPIPKGELFSPDHVRVLNSSGNEIPSQITEVSTWAPADNSIKWLWVFFFTEDGDSYSVEYGNEVRNGRMYDERILVNNNQRPTGEVEVNTGPLRFTVEKGLGGGFQRSPAGSGFLDKVEFDIAGDGFDEGDVIATGTAGRASFLDILDKAGLDPSNAVVLRTVKEKGTGPLHAIIRVEGE*RYSRDNNKTQQSTTKKNPTPGKTYQKAKHT 717
            I ITV+   PG P  FGVP PKGEL SPDHVRVLNS G EI SQ T V+TW PAD SIKWLWVFFF ++ + YSVEYG  VR     +  I+  NNQR  G  E+NTGPL   V KG          GSGF+D+V+++   DGF +  +IA+G   R +FLD+LD AG+D S AV+ +   EKG+GP+HAI+RVEGE  Y RD+++     T  +   GK Y K  HT
Sbjct:   29 ITITVQQAEPGAPVKFGVPFPKGELHSPDHVRVLNSRGQEIASQKTSVTTWEPADGSIKWLWVFFFADESEEYSVEYGENVRQTVFTENPIVFKNNQRDNGFAEINTGPLFLRVNKG----------GSGFIDRVQYNPEMDGFGDEHLIASGIDARGTFLDLLDDAGVDTSRAVIHQHFIEKGSGPMHAILRVEGEYEYDRDDHENAPFVTYIHAYAGKPYVKVLHT 246          
BLAST of mRNA_M-pyrifera_M_contig96180.22165.1 vs. uniprot
Match: A0A0P7WJT9_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium HLUCCA01 TaxID=1666909 RepID=A0A0P7WJT9_9BACT)

HSP 1 Score: 220 bits (560), Expect = 5.740e-63
Identity = 111/219 (50.68%), Postives = 145/219 (66.21%), Query Frame = 1
Query:   58 IPGTPQVFGVPIPKGELFSPDHVRVLNSSGNEIPSQITEVSTWAPADNSIKWLWVFFFTEDGDSYSVEYGNEVRNGRMYDERILVNNNQRPTGEVEVNTGPLRFTVEKGLGGGFQRSPAGSGFLDKVEFDIAGDGFDEGDVIATGTAGRASFLDILDKAGLDPSNAVVLRTVKEKGTGPLHAIIRVEGE*RYSRDNNKTQQSTTKKNPTPGKTYQKAKH 714
            +PG+P V GVP PKG L SPDHVRV+ S+G EIPSQITEVSTW P+D SIKW+WVFFF +  D Y +EYG +VR    Y   I++ NNQRP G +EV TGPLR TV+K   GGF         LD+VE +   DGF +  ++AT   GR SFLD++D  G D S AV+ +   +KG+GPLH IIR+EGE +Y+R +N +    T+ +   G++Y +  H
Sbjct:    8 VPGSPVVLGVPFPKGALHSPDHVRVVGSNGAEIPSQITEVSTWEPSDRSIKWVWVFFFADAADGYRLEYGPDVRREAAYAHGIIIKNNQRPAGGIEVTTGPLRITVDKRTAGGF---------LDRVEVNPDADGFGDEHLLATSPLGRGSFLDMIDDNGPDSSRAVIQQIFVDKGSGPLHTIIRIEGEYQYNRADNPSSPFVTRVHAYAGRSYIRVYH 217          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig96180.22165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0003A678F11.130e-10672.49hypothetical protein n=1 Tax=Gracilimonas tropica ... [more]
A0A2E6N3M7_9BACT2.290e-9964.29Uncharacterized protein n=1 Tax=Balneola sp. TaxID... [more]
A0A523J066_9BACT2.760e-7454.81Uncharacterized protein n=2 Tax=Caldithrix sp. Tax... [more]
UPI0014215AE78.010e-7354.55hypothetical protein n=1 Tax=Rhodocaloribacter lit... [more]
A0A7C2CFZ8_9BACT1.750e-7053.85Uncharacterized protein n=1 Tax=Blastocatellia bac... [more]
A0A2P6BZX9_9BACT5.820e-6952.14Uncharacterized protein n=1 Tax=Salinibacter sp. 1... [more]
A0A7C2XVE7_9BACT6.220e-6953.59Uncharacterized protein n=1 Tax=Blastocatellia bac... [more]
A0A2H5VJQ9_9BACT1.480e-6552.81Uncharacterized protein n=3 Tax=Bacteria TaxID=2 R... [more]
A0A6I7QFZ9_9BACT4.710e-6351.75Uncharacterized protein (Fragment) n=1 Tax=Balneol... [more]
A0A0P7WJT9_9BACT5.740e-6350.68Uncharacterized protein n=1 Tax=Bacteroidetes bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig96180contigM-pyrifera_M_contig96180:6..722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score170.6
Seed ortholog evalue4.1e-40
Seed eggNOG ortholog1121930.AQXG01000002_gene2286
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Beta-L-arabinofuranosidase, GH127
EggNOG OGs4PM85@976,COG3533@1,COG3533@2
COG Functional cat.S
Best tax levelBacteroidetes
Best eggNOG OGNA|NA|NA
Exons1
Model size717
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig96180.22165.1prot_M-pyrifera_M_contig96180.22165.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig96180 294..632 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816876.9044638-UTR-M-pyrifera_M_contig96180:5..2931622816876.9044638-UTR-M-pyrifera_M_contig96180:5..293Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig96180 6..293 +
1692278231.1550038-UTR-M-pyrifera_M_contig96180:5..2931692278231.1550038-UTR-M-pyrifera_M_contig96180:5..293Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig96180 6..293 +
1622816876.9311967-UTR-M-pyrifera_M_contig96180:632..7221622816876.9311967-UTR-M-pyrifera_M_contig96180:632..722Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig96180 633..722 +
1692278231.2030983-UTR-M-pyrifera_M_contig96180:632..7221692278231.2030983-UTR-M-pyrifera_M_contig96180:632..722Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig96180 633..722 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816876.9165323-CDS-M-pyrifera_M_contig96180:293..6321622816876.9165323-CDS-M-pyrifera_M_contig96180:293..632Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96180 294..632 +
1692278231.1773195-CDS-M-pyrifera_M_contig96180:293..6321692278231.1773195-CDS-M-pyrifera_M_contig96180:293..632Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96180 294..632 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig96180.22165.1

>prot_M-pyrifera_M_contig96180.22165.1 ID=prot_M-pyrifera_M_contig96180.22165.1|Name=mRNA_M-pyrifera_M_contig96180.22165.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
MYDERILVNNNQRPTGEVEVNTGPLRFTVEKGLGGGFQRSPAGSGFLDKV
EFDIAGDGFDEGDVIATGTAGRASFLDILDKAGLDPSNAVVLRTVKEKGT
GPLHAIIRVEGE*
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mRNA from alignment at M-pyrifera_M_contig96180:6..722+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig96180.22165.1 ID=mRNA_M-pyrifera_M_contig96180.22165.1|Name=mRNA_M-pyrifera_M_contig96180.22165.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=717bp|location=Sequence derived from alignment at M-pyrifera_M_contig96180:6..722+ (Macrocystis pyrifera P11B4 male)
TTAGGATCGAGTTTTGCAAGTGATGCAACAAAGATCCCTATTACTGTAAA GAATAATATTCCTGGTACTCCTCAAGTTTTCGGAGTGCCTATTCCAAAAG GAGAATTATTTTCTCCCGATCATGTTCGGGTTCTTAATAGTAGCGGCAAT GAAATTCCATCACAAATAACTGAGGTATCGACATGGGCACCTGCTGACAA TAGTATTAAATGGCTTTGGGTATTCTTTTTTACAGAAGATGGTGATTCTT ATAGTGTTGAATACGGCAATGAAGTAAGAAATGGAAGAATGTATGATGAA AGAATACTTGTTAACAATAATCAAAGACCAACTGGTGAAGTTGAAGTAAA CACTGGCCCCCTTAGGTTTACAGTTGAAAAAGGATTAGGTGGAGGATTTC AAAGATCTCCAGCTGGTAGTGGTTTTCTTGATAAGGTAGAATTCGATATT GCTGGCGATGGTTTTGATGAAGGAGACGTTATTGCAACAGGTACGGCAGG AAGAGCTTCTTTTTTAGACATCCTCGATAAAGCAGGTCTCGATCCATCGA ATGCGGTAGTGCTTAGAACGGTAAAGGAAAAAGGAACAGGCCCTCTTCAT GCTATAATAAGAGTAGAAGGTGAATAAAGATATTCCAGAGATAACAACAA AACGCAACAATCCACAACTAAAAAAAATCCTACTCCGGGAAAAACCTATC AAAAAGCAAAACATACA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig96180:6..722+

>mRNA_M-pyrifera_M_contig96180.22165.1 ID=mRNA_M-pyrifera_M_contig96180.22165.1|Name=mRNA_M-pyrifera_M_contig96180.22165.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig96180:6..722+ (Macrocystis pyrifera P11B4 male)
ATGTATGATGAAAGAATACTTGTTAACAATAATCAAAGACCAACTGGTGA
AGTTGAAGTAAACACTGGCCCCCTTAGGTTTACAGTTGAAAAAGGATTAG
GTGGAGGATTTCAAAGATCTCCAGCTGGTAGTGGTTTTCTTGATAAGGTA
GAATTCGATATTGCTGGCGATGGTTTTGATGAAGGAGACGTTATTGCAAC
AGGTACGGCAGGAAGAGCTTCTTTTTTAGACATCCTCGATAAAGCAGGTC
TCGATCCATCGAATGCGGTAGTGCTTAGAACGGTAAAGGAAAAAGGAACA
GGCCCTCTTCATGCTATAATAAGAGTAGAAGGTGAATAAATGTATGATGA
AAGAATACTTGTTAACAATAATCAAAGACCAACTGGTGAAGTTGAAGTAA
ACACTGGCCCCCTTAGGTTTACAGTTGAAAAAGGATTAGGTGGAGGATTT
CAAAGATCTCCAGCTGGTAGTGGTTTTCTTGATAAGGTAGAATTCGATAT
TGCTGGCGATGGTTTTGATGAAGGAGACGTTATTGCAACAGGTACGGCAG
GAAGAGCTTCTTTTTTAGACATCCTCGATAAAGCAGGTCTCGATCCATCG
AATGCGGTAGTGCTTAGAACGGTAAAGGAAAAAGGAACAGGCCCTCTTCA
TGCTATAATAAGAGTAGAAGGTGAATAA
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