mRNA_M-pyrifera_M_contig96119.22158.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig96119.22158.1
Unique NamemRNA_M-pyrifera_M_contig96119.22158.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig96119.22158.1 vs. uniprot
Match: A0A0L0FCB8_9EUKA (Uncharacterized protein n=2 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FCB8_9EUKA)

HSP 1 Score: 65.5 bits (158), Expect = 1.940e-10
Identity = 37/101 (36.63%), Postives = 57/101 (56.44%), Query Frame = 1 
Query:    4 LFSTLAWLGILHDRMHD-------FWRFMEVTIPPHPISFIYSEDDQMTPVKPLDDLVQLKKHQGVNIAHVCRLKSSPHVTHLRHHPQTYTTLAKNVLKAA 285
            +F  +A LG+++ R          FW  M+ +       +IYS DD++T  K LD+L+  +K +GV I  + RL+SSPHV HL+ HP+ Y     N+L+ A
Sbjct:  226 VFGIVAALGVVYARATGAPGRGVVFWDHMQQSNLGCKQYYIYSVDDELTDAKYLDELIAYRKEKGVEITAI-RLESSPHVQHLKSHPEVYNQFVDNILEEA 325
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BLAST of mRNA_M-pyrifera_M_contig96119.22158.1 vs. uniprot
Match: A0A0L0FF09_9EUKA (Uncharacterized protein n=2 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FF09_9EUKA)

HSP 1 Score: 61.6 bits (148), Expect = 4.730e-9
Identity = 36/96 (37.50%), Postives = 54/96 (56.25%), Query Frame = 1 
Query:    1 KLFSTLAWLGILHDRMHDFWRFMEVTIPPHPISFIYSEDDQMTPVKPLDDLVQLKKHQGVNIAHVCRLKSSPHVTHLRHHPQTYTTLAKNVLKAAQ 288
            KL + LA       R   FW  M+ +       +IYS DD +T VK LD+L+  ++ +GV I  + RL+SSPHV HL++HP+ Y      +L+ A+
Sbjct:  239 KLIAVLAETTDSIMRGTLFWEHMQQSNLGCKQYYIYSVDDYLTDVKFLDELITYRREKGVEITAI-RLESSPHVQHLKYHPEVYNKFVDGILEEAR 333
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig96119.22158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0L0FCB8_9EUKA1.940e-1036.63Uncharacterized protein n=2 Tax=Sphaeroforma arcti... [more]
A0A0L0FF09_9EUKA4.730e-937.50Uncharacterized protein n=2 Tax=Sphaeroforma arcti... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig96119contigM-pyrifera_M_contig96119:55..342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score67.8
Seed ortholog evalue3.2e-09
Seed eggNOG ortholog72019.SARC_13067T0
Preferred nameTMEM53
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Eukaryotic protein of unknown function (DUF829)
EggNOG OGs39R86@33154,KOG2521@1,KOG2521@2759
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816876.5409348-CDS-M-pyrifera_M_contig96119:54..3421622816876.5409348-CDS-M-pyrifera_M_contig96119:54..342Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96119 55..342 +
1692278230.9531636-CDS-M-pyrifera_M_contig96119:54..3421692278230.9531636-CDS-M-pyrifera_M_contig96119:54..342Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96119 55..342 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig96119.22158.1prot_M-pyrifera_M_contig96119.22158.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig96119 55..342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig96119.22158.1

>prot_M-pyrifera_M_contig96119.22158.1 ID=prot_M-pyrifera_M_contig96119.22158.1|Name=mRNA_M-pyrifera_M_contig96119.22158.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
KLFSTLAWLGILHDRMHDFWRFMEVTIPPHPISFIYSEDDQMTPVKPLDD
LVQLKKHQGVNIAHVCRLKSSPHVTHLRHHPQTYTTLAKNVLKAAQ
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mRNA from alignment at M-pyrifera_M_contig96119:55..342+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig96119.22158.1 ID=mRNA_M-pyrifera_M_contig96119.22158.1|Name=mRNA_M-pyrifera_M_contig96119.22158.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig96119:55..342+ (Macrocystis pyrifera P11B4 male)
AAGCTCTTTTCTACACTGGCTTGGCTCGGCATTCTGCACGACCGCATGCA
TGATTTTTGGAGGTTTATGGAAGTGACCATCCCACCACACCCAATCTCCT
TCATCTACTCGGAAGACGACCAAATGACCCCAGTGAAACCGCTCGACGAT
CTCGTGCAGCTCAAGAAGCACCAAGGCGTCAACATCGCCCACGTGTGCAG
GCTGAAATCTTCGCCGCACGTCACCCACCTCAGACACCACCCACAAACGT
ACACCACGCTTGCCAAGAATGTCCTCAAAGCAGCGCAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig96119:55..342+

>mRNA_M-pyrifera_M_contig96119.22158.1 ID=mRNA_M-pyrifera_M_contig96119.22158.1|Name=mRNA_M-pyrifera_M_contig96119.22158.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig96119:55..342+ (Macrocystis pyrifera P11B4 male)
AAGCTCTTTTCTACACTGGCTTGGCTCGGCATTCTGCACGACCGCATGCA
TGATTTTTGGAGGTTTATGGAAGTGACCATCCCACCACACCCAATCTCCT
TCATCTACTCGGAAGACGACCAAATGACCCCAGTGAAACCGCTCGACGAT
CTCGTGCAGCTCAAGAAGCACCAAGGCGTCAACATCGCCCACGTGTGCAG
GCTGAAATCTTCGCCGCACGTCACCCACCTCAGACACCACCCACAAACGT
ACACCACGCTTGCCAAGAATGTCCTCAAAGCAGCGCAAAAGCTCTTTTCT
ACACTGGCTTGGCTCGGCATTCTGCACGACCGCATGCATGATTTTTGGAG
GTTTATGGAAGTGACCATCCCACCACACCCAATCTCCTTCATCTACTCGG
AAGACGACCAAATGACCCCAGTGAAACCGCTCGACGATCTCGTGCAGCTC
AAGAAGCACCAAGGCGTCAACATCGCCCACGTGTGCAGGCTGAAATCTTC
GCCGCACGTCACCCACCTCAGACACCACCCACAAACGTACACCACGCTTG
CCAAGAATGTCCTCAAAGCAGCGCAA
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