mRNA_M-pyrifera_M_contig96117.22157.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig96117.22157.1
Unique NamemRNA_M-pyrifera_M_contig96117.22157.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig96117.22157.1 vs. uniprot
Match: A0A2M7LG33_9SPHN (Uncharacterized protein n=1 Tax=Sphingomonadales bacterium CG_4_10_14_3_um_filter_58_15 TaxID=1974093 RepID=A0A2M7LG33_9SPHN)

HSP 1 Score: 48.9 bits (115), Expect = 3.320e-5
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1 
Query:    1 MKKVTTSIVLAAALGLAACSGADNAE 78
            MKKVTTSIVLAAALGLAACSGADNAE
Sbjct:    1 MKKVTTSIVLAAALGLAACSGADNAE 26
[Close]
BLAST of mRNA_M-pyrifera_M_contig96117.22157.1 vs. uniprot
Match: A0A653JKH8_9SPHN (Uncharacterized protein n=1 Tax=Sphingorhabdus sp. 109 TaxID=2653173 RepID=A0A653JKH8_9SPHN)

HSP 1 Score: 48.9 bits (115), Expect = 4.930e-5
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1 
Query:    1 MKKVTTSIVLAAALGLAACSGADNAE 78
            MKKVTTSIVLAAALGLAACSGADNAE
Sbjct:    1 MKKVTTSIVLAAALGLAACSGADNAE 26
[Close]
BLAST of mRNA_M-pyrifera_M_contig96117.22157.1 vs. uniprot
Match: A0A127MGP4_9SPHN (Uncharacterized protein n=1 Tax=Sphingorhabdus sp. M41 TaxID=1806885 RepID=A0A127MGP4_9SPHN)

HSP 1 Score: 48.9 bits (115), Expect = 4.930e-5
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1 
Query:    1 MKKVTTSIVLAAALGLAACSGADNAE 78
            MKKVTTSIVLAAALGLAACSGADNAE
Sbjct:    1 MKKVTTSIVLAAALGLAACSGADNAE 26
[Close]
BLAST of mRNA_M-pyrifera_M_contig96117.22157.1 vs. uniprot
Match: A0A220WB21_9SPHN (Uncharacterized protein n=1 Tax=Sphingorhabdus sp. SMR4y TaxID=2584094 RepID=A0A220WB21_9SPHN)

HSP 1 Score: 48.9 bits (115), Expect = 4.930e-5
Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 1 
Query:    1 MKKVTTSIVLAAALGLAACSGADNAEA 81
            MKK+TTSIV+AAALGLAACSGADNAEA
Sbjct:    1 MKKITTSIVIAAALGLAACSGADNAEA 27
[Close]
BLAST of mRNA_M-pyrifera_M_contig96117.22157.1 vs. uniprot
Match: A0A2D3RE70_9SPHN (Uncharacterized protein n=1 Tax=Sphingorhabdus sp. YGSMI21 TaxID=2077182 RepID=A0A2D3RE70_9SPHN)

HSP 1 Score: 48.9 bits (115), Expect = 4.930e-5
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1 
Query:    1 MKKVTTSIVLAAALGLAACSGADNAE 78
            MKKVTTSIVLAAALGLAACSGADNAE
Sbjct:    1 MKKVTTSIVLAAALGLAACSGADNAE 26
[Close]
BLAST of mRNA_M-pyrifera_M_contig96117.22157.1 vs. uniprot
Match: A0A1N6H9K7_9SPHN (Uncharacterized protein n=1 Tax=Parasphingorhabdus marina DSM 22363 TaxID=1123272 RepID=A0A1N6H9K7_9SPHN)

HSP 1 Score: 48.5 bits (114), Expect = 8.370e-5
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 1 
Query:    1 MKKVTTSIVLAAALGLAACSGADNAEA 81
            MKKVTTSIVLAAALGLAACSGA+NAEA
Sbjct:    1 MKKVTTSIVLAAALGLAACSGAENAEA 27
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig96117.22157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2M7LG33_9SPHN3.320e-5100.00Uncharacterized protein n=1 Tax=Sphingomonadales b... [more]
A0A653JKH8_9SPHN4.930e-5100.00Uncharacterized protein n=1 Tax=Sphingorhabdus sp.... [more]
A0A127MGP4_9SPHN4.930e-5100.00Uncharacterized protein n=1 Tax=Sphingorhabdus sp.... [more]
A0A220WB21_9SPHN4.930e-592.59Uncharacterized protein n=1 Tax=Sphingorhabdus sp.... [more]
A0A2D3RE70_9SPHN4.930e-5100.00Uncharacterized protein n=1 Tax=Sphingorhabdus sp.... [more]
A0A1N6H9K7_9SPHN8.370e-596.30Uncharacterized protein n=1 Tax=Parasphingorhabdus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig96117contigM-pyrifera_M_contig96117:161..505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size345
Cds size345
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816876.5064714-CDS-M-pyrifera_M_contig96117:160..5051622816876.5064714-CDS-M-pyrifera_M_contig96117:160..505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96117 161..505 -
1692278230.9389937-CDS-M-pyrifera_M_contig96117:160..5051692278230.9389937-CDS-M-pyrifera_M_contig96117:160..505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96117 161..505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig96117.22157.1prot_M-pyrifera_M_contig96117.22157.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig96117 161..505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig96117.22157.1

>prot_M-pyrifera_M_contig96117.22157.1 ID=prot_M-pyrifera_M_contig96117.22157.1|Name=mRNA_M-pyrifera_M_contig96117.22157.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
MKKVTTSIVLAAALGLAACSGADNAEAGADEAVEGTEATAEEAADDAMDA
AEGTADAMGEAAAEATAEAGEAAEAAGEAADAAGEAAKAAGEAAKDAANN
AVDKAAAAAKEAVN*
back to top

mRNA from alignment at M-pyrifera_M_contig96117:161..505-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig96117.22157.1 ID=mRNA_M-pyrifera_M_contig96117.22157.1|Name=mRNA_M-pyrifera_M_contig96117.22157.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig96117:161..505- (Macrocystis pyrifera P11B4 male)
ATGAAAAAAGTTACAACATCAATCGTTCTGGCCGCTGCACTCGGCCTGGC
TGCATGCTCAGGCGCAGACAATGCCGAAGCTGGTGCGGATGAAGCAGTAG
AAGGCACGGAAGCAACCGCTGAAGAAGCTGCTGATGATGCAATGGATGCC
GCTGAAGGCACAGCCGACGCCATGGGCGAAGCAGCTGCTGAAGCAACTGC
AGAAGCTGGTGAAGCTGCTGAAGCTGCTGGTGAAGCTGCGGATGCCGCTG
GCGAAGCTGCAAAAGCTGCTGGCGAAGCTGCTAAAGATGCTGCCAATAAC
GCAGTAGACAAAGCCGCTGCCGCTGCGAAAGAAGCAGTCAATTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig96117:161..505-

>mRNA_M-pyrifera_M_contig96117.22157.1 ID=mRNA_M-pyrifera_M_contig96117.22157.1|Name=mRNA_M-pyrifera_M_contig96117.22157.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig96117:161..505- (Macrocystis pyrifera P11B4 male)
ATGAAAAAAGTTACAACATCAATCGTTCTGGCCGCTGCACTCGGCCTGGC
TGCATGCTCAGGCGCAGACAATGCCGAAGCTGGTGCGGATGAAGCAGTAG
AAGGCACGGAAGCAACCGCTGAAGAAGCTGCTGATGATGCAATGGATGCC
GCTGAAGGCACAGCCGACGCCATGGGCGAAGCAGCTGCTGAAGCAACTGC
AGAAGCTGGTGAAGCTGCTGAAGCTGCTGGTGAAGCTGCGGATGCCGCTG
GCGAAGCTGCAAAAGCTGCTGGCGAAGCTGCTAAAGATGCTGCCAATAAC
GCAGTAGACAAAGCCGCTGCCGCTGCGAAAGAAGCAGTCAATTAAATGAA
AAAAGTTACAACATCAATCGTTCTGGCCGCTGCACTCGGCCTGGCTGCAT
GCTCAGGCGCAGACAATGCCGAAGCTGGTGCGGATGAAGCAGTAGAAGGC
ACGGAAGCAACCGCTGAAGAAGCTGCTGATGATGCAATGGATGCCGCTGA
AGGCACAGCCGACGCCATGGGCGAAGCAGCTGCTGAAGCAACTGCAGAAG
CTGGTGAAGCTGCTGAAGCTGCTGGTGAAGCTGCGGATGCCGCTGGCGAA
GCTGCAAAAGCTGCTGGCGAAGCTGCTAAAGATGCTGCCAATAACGCAGT
AGACAAAGCCGCTGCCGCTGCGAAAGAAGCAGTCAATTAA
back to top