mRNA_M-pyrifera_M_contig96026.22135.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig96026.22135.1
Unique NamemRNA_M-pyrifera_M_contig96026.22135.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig96026.22135.1 vs. uniprot
Match: UPI001EECD0D8 (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like n=1 Tax=Daphnia pulicaria TaxID=35523 RepID=UPI001EECD0D8)

HSP 1 Score: 60.1 bits (144), Expect = 4.040e-8
Identity = 46/113 (40.71%), Postives = 62/113 (54.87%), Query Frame = 1
Query:    7 VLLKTGFVDLNAKDKEGWTAVHYAACYGTVEVVTALLGR-MPPSAVQATTKSGANALQLVARNTAHGAGIIKALLKT----GFVDINAKDKEGWTAVHYAARYGNSDTIIALI 330
            +LL    ++++  D+ G+TA+H+AA    V  V  LL +   P+AV    KSG + L  VA     G  II  LL+     G  D+N +DKEGWTA+HYAA Y N  T   LI
Sbjct:  453 LLLAHDKINVDDVDEHGFTALHWAALASNVIAVQKLLEKGANPNAVG---KSGDSPLH-VAATQRDGIPIIDLLLEAQKVKGLGDVNDRDKEGWTALHYAAAYSNEITAEHLI 561          
BLAST of mRNA_M-pyrifera_M_contig96026.22135.1 vs. uniprot
Match: A0A0G1B4R9_9BACT (Uncharacterized protein n=1 Tax=candidate division TM6 bacterium GW2011_GWE2_42_60 TaxID=1619076 RepID=A0A0G1B4R9_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 7.420e-8
Identity = 40/115 (34.78%), Postives = 60/115 (52.17%), Query Frame = 1
Query:    1 IKVLLKTGFVDLNAKDKEGWTAVHYAACYGTVEVVTALLGRMPPSAVQATTKSGANALQLVARNTAHGAGIIKALLKTGFVDINAKDKEGWTAVHYAARYGNSDTIIALISSTQP 345
            +K L++ G   ++ K    WTA HYAA  G +E++  L G  P S +++ T +GA  L + A N   GA  +K L+  G   INA D  GWT +H+  +  N  T+I  +    P
Sbjct:  512 VKKLVELG-ATIHTKSLNNWTAFHYAAQKGNLEIIDFLYGEKP-SLLKSLTNTGATPLHIAAANGQLGA--VKKLIDLGST-INATDINGWTVLHFTVQ-NNYPTLIDFLLEKNP 620          
BLAST of mRNA_M-pyrifera_M_contig96026.22135.1 vs. uniprot
Match: A0A2E6T3K4_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E6T3K4_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 9.520e-8
Identity = 40/118 (33.90%), Postives = 56/118 (47.46%), Query Frame = 1
Query:   28 VDLNAKDKEGWTAVHYAACYGTVEVVTALLGRMPPSAVQA-----------------------TTKSGANALQLVARNTAHGAGIIKALLKTGFVDINAKDKEGWTAVHYAARYGNSD 312
            V++NAKD  GWTA+HYAA +G  E+V  L+                                 T      A+ +V +N       ++ALL  G VD+NAKD+ GWTA+HYA R+G  +
Sbjct:  295 VEVNAKDNGGWTALHYAAWHGRKEIVELLISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTHGGKTGAIFVVVKNDDLTG--VQALLDAG-VDVNAKDENGWTALHYAIRHGQKE 409          
BLAST of mRNA_M-pyrifera_M_contig96026.22135.1 vs. uniprot
Match: A0A4V1XNH9_9PEZI (Uncharacterized protein n=1 Tax=Monosporascus sp. CRB-8-3 TaxID=2211644 RepID=A0A4V1XNH9_9PEZI)

HSP 1 Score: 55.5 bits (132), Expect = 4.600e-7
Identity = 36/112 (32.14%), Postives = 57/112 (50.89%), Query Frame = 1
Query:    1 IKVLLKTGFVDLNAKDKEGWTAVHYAACYGTVEVVTALLGRMPPSAVQATTKSGANALQLVARNTAHGAGIIKALLKTGFVDINAKDKEGWTAVHYAARYGNSDTIIALISS 336
            + +LL+ G  D+N K+  G T +H+ A    +EV   L    PP++ +   K G  AL    R  A G+  +  LL      +NA D  G+TA+H+A   G+ D  +AL+ +
Sbjct:   25 VDLLLQKG-ADVNQKNNNGQTVMHFVASKNNLEVARKLFENKPPASARVRDKRGQYALH---RAAAVGSVPMVNLLLKNRSPLNATDMAGYTALHHAVAEGHGDVAVALLKA 132          
BLAST of mRNA_M-pyrifera_M_contig96026.22135.1 vs. uniprot
Match: A0A3F2RV44_9STRA (Palmitoyltransferase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RV44_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 5.460e-6
Identity = 41/116 (35.34%), Postives = 60/116 (51.72%), Query Frame = 1
Query:   34 LNAKDKEGWTAVHYAACYGT--VEVVTALLGRMPPSAVQATTKSGANALQLVARNTAHGAGIIKA-----------LLKTGFVDINAKDKEGWTAVHYAARYGNSDTIIALISSTQ 342
            L+A+DK G T  HYAA  GT  ++ +  L+ +M  S        G   + + ARN A     I+A           LL+TGFVD+ A+DK+G TA H+AA  G+   +  L+ + Q
Sbjct:   40 LSARDKHGNTLAHYAAAGGTDTLDTMHFLMQQMQAS--------GREKMLMDARNDAEETPFIRAAHVGSLRLADTLLRTGFVDLMAQDKQGNTAAHHAAAQGHLWMLHFLLEAEQ 147          
BLAST of mRNA_M-pyrifera_M_contig96026.22135.1 vs. uniprot
Match: K3WU08_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WU08_GLOUD)

HSP 1 Score: 53.1 bits (126), Expect = 1.010e-5
Identity = 34/101 (33.66%), Postives = 51/101 (50.50%), Query Frame = 1
Query:   31 DLNAKDKEGWTAVHYAACYGTVEVVTALLGRMPPSAVQATTKSGANALQLVARNTAHGAGIIKALLKTGFVDINAKDKEGWTAVHYAARYGNSDTIIALIS 333
            DLNAKD  GW+A+HYAA +G ++VV  LL  +    V  T+ S ++   L                     D+N++D  GWT +  AA  G+++ +  LIS
Sbjct:  386 DLNAKDGSGWSALHYAADFGHLDVVQILLECVMTPEVPPTSVSNSSVHHLA--------------------DVNSRDACGWTPLMCAAANGHTEIVEVLIS 466          
BLAST of mRNA_M-pyrifera_M_contig96026.22135.1 vs. uniprot
Match: A0A0N8ES75_AEDAE (Uncharacterized protein (Fragment) n=1 Tax=Aedes aegypti TaxID=7159 RepID=A0A0N8ES75_AEDAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.050e-5
Identity = 36/110 (32.73%), Postives = 56/110 (50.91%), Query Frame = 1
Query:    1 IKVLLKTGFVDLNAKDKEGWTAVHYAACYGTVEVVTALLGRMPPSAVQATTKSGANALQLVARNTAHGAGIIKALLKTGFVDINAKDKEGWTAVHYAARYGNSDTIIALI 330
            ++ LL    + +N + K G+T  HYAA  G  E++  LL        Q+T   G + L + A+N  +    ++ LL+        KDK+G TA+HYAA +GN   +  LI
Sbjct:   55 VQKLLSCSTIKVNVRGKNGFTTFHYAAKVGLTELIETLLKFNVDINGQST--FGESPLHIAAKN--NQVDFLRKLLERTETKNGLKDKDGLTALHYAAEHGNPKCVNLLI 160          
BLAST of mRNA_M-pyrifera_M_contig96026.22135.1 vs. uniprot
Match: A0A2Z6NF68_TRISU (IPT/TIG domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NF68_TRISU)

HSP 1 Score: 53.1 bits (126), Expect = 1.070e-5
Identity = 38/111 (34.23%), Postives = 57/111 (51.35%), Query Frame = 1
Query:   28 VDLNAKDKEGWTAVHYAACYGT---VEVVTALLGRMPPSAVQATTKSGANALQLVARNTAHGAGI------IKALLKTGFVDINAKDKEGWTAVHYAARYGNSDTIIALIS 333
            V++N +D  GWTA+H+AA  G    + + + LL ++  S        G N L    +   H A +      I  +L  G V+IN +D  GWTA+H+AA  G   T+ AL+S
Sbjct:  550 VNINFRDVNGWTALHWAASCGRQVKLNLYSWLLHKVTESG------KGPNVLDKDGQGVLHLAAVLDYDWAITPILIAG-VNINFRDVNGWTALHWAASCGRERTVAALVS 653          
BLAST of mRNA_M-pyrifera_M_contig96026.22135.1 vs. uniprot
Match: UPI001EDF34B4 (uncharacterized protein LOC124208913 n=1 Tax=Daphnia pulex TaxID=6669 RepID=UPI001EDF34B4)

HSP 1 Score: 52.8 bits (125), Expect = 1.500e-5
Identity = 39/112 (34.82%), Postives = 57/112 (50.89%), Query Frame = 1
Query:    1 IKVLLKTGFVDLNAKDKEGWTAVHYAACYGTVEVVTALLGRMPPSAVQATTKSGANALQLVARNTAHGAGIIKALLKTGFVDINAKDKEGWTAVHYAARYGNSDTIIALISS 336
            + +LL+   VD+N     G+T +H+A     V VV  LL R     V    ++GA  L + A   A    ++  +LKT  VDIN +DK G TA+HYA R    D +  L+ +
Sbjct: 1755 LDLLLEDEDVDINDGGISGYTLLHWAMATSNVTVVDFLLSRGANPNVAG--QNGATPLHMAAY-CADKTDVLDLILKTKQVDINRRDKNGQTALHYAVRGYRVDNVGYLLEN 1863          
BLAST of mRNA_M-pyrifera_M_contig96026.22135.1 vs. uniprot
Match: A0A6J4JP56_9BACT (Uncharacterized protein n=1 Tax=uncultured Armatimonadetes bacterium TaxID=157466 RepID=A0A6J4JP56_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 1.690e-5
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 1
Query:    1 IKVLLKTGFVDLNAKDKEGWTAVHYAACYGTVEVVTALLGRMPPSAVQATTKSGANALQLVAR---NTAHGAGIIKA--LLKTGFVDINAKDKEGWTAVHYAARYGNSDTI 318
            +++L+  G  D  A ++EGWTA+H+AA  G VE+V+ LL        + TT+ G   L L         HG  +  A  L++ G  D+NA+ K+G TA+ +AA  G  D +
Sbjct:  120 VRLLIGRG-ADAGAANEEGWTALHHAAGAGNVEIVSTLLDARANVNAR-TTRFGETPLMLACGLFGGGGHGRAVACARLLIERG-ADVNARTKDGETALTFAAGRGRVDAV 227          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig96026.22135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
UPI001EECD0D84.040e-840.71serine/threonine-protein phosphatase 6 regulatory ... [more]
A0A0G1B4R9_9BACT7.420e-834.78Uncharacterized protein n=1 Tax=candidate division... [more]
A0A2E6T3K4_9BACT9.520e-833.90Uncharacterized protein n=1 Tax=Verrucomicrobiales... [more]
A0A4V1XNH9_9PEZI4.600e-732.14Uncharacterized protein n=1 Tax=Monosporascus sp. ... [more]
A0A3F2RV44_9STRA5.460e-635.34Palmitoyltransferase n=3 Tax=Phytophthora kernovia... [more]
K3WU08_GLOUD1.010e-533.66Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A0N8ES75_AEDAE1.050e-532.73Uncharacterized protein (Fragment) n=1 Tax=Aedes a... [more]
A0A2Z6NF68_TRISU1.070e-534.23IPT/TIG domain-containing protein n=1 Tax=Trifoliu... [more]
UPI001EDF34B41.500e-534.82uncharacterized protein LOC124208913 n=1 Tax=Daphn... [more]
A0A6J4JP56_9BACT1.690e-535.14Uncharacterized protein n=1 Tax=uncultured Armatim... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig96026contigM-pyrifera_M_contig96026:363..710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeNematoda
Seed ortholog score63.2
Seed ortholog evalue9.5e-08
Seed eggNOG ortholog281687.CJA28726b
KEGG koko:K17705
KEGG Pathwayko04015,ko04212,map04015,map04212
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005886,GO:0016020,GO:0016324,GO:0016327,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0045177,GO:0071944,GO:0098590
EggNOG free text desc.Ankyrin repeats (many copies)
EggNOG OGs1KW8J@119089,38HR2@33154,3BAD6@33208,3D27U@33213,40DQG@6231,410K4@6236,KOG4335@1,KOG4335@2759
COG Functional cat.T
Best tax levelRhabditida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size348
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816875.3285692-CDS-M-pyrifera_M_contig96026:362..7101622816875.3285692-CDS-M-pyrifera_M_contig96026:362..710Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96026 363..710 -
1692278230.1106632-CDS-M-pyrifera_M_contig96026:362..7101692278230.1106632-CDS-M-pyrifera_M_contig96026:362..710Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96026 363..710 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig96026.22135.1prot_M-pyrifera_M_contig96026.22135.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig96026 363..710 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig96026.22135.1

>prot_M-pyrifera_M_contig96026.22135.1 ID=prot_M-pyrifera_M_contig96026.22135.1|Name=mRNA_M-pyrifera_M_contig96026.22135.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
IKVLLKTGFVDLNAKDKEGWTAVHYAACYGTVEVVTALLGRMPPSAVQAT
TKSGANALQLVARNTAHGAGIIKALLKTGFVDINAKDKEGWTAVHYAARY
GNSDTIIALISSTQPL
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mRNA from alignment at M-pyrifera_M_contig96026:363..710-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig96026.22135.1 ID=mRNA_M-pyrifera_M_contig96026.22135.1|Name=mRNA_M-pyrifera_M_contig96026.22135.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig96026:363..710- (Macrocystis pyrifera P11B4 male)
ATTAAGGTACTATTAAAGACAGGTTTTGTAGATCTCAATGCCAAAGATAA AGAAGGCTGGACAGCTGTGCATTATGCTGCATGTTACGGCACGGTAGAGG TGGTAACAGCTTTATTGGGAAGGATGCCGCCTTCGGCGGTTCAAGCTACA ACAAAGTCTGGCGCAAATGCACTACAGTTGGTCGCTCGCAATACTGCCCA TGGCGCAGGCATAATTAAGGCACTATTAAAGACAGGTTTTGTAGATATCA ATGCCAAAGATAAAGAAGGCTGGACAGCTGTGCATTATGCTGCACGTTAT GGTAATTCGGACACAATTATTGCGCTTATTAGTAGCACTCAGCCGCTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig96026:363..710-

>mRNA_M-pyrifera_M_contig96026.22135.1 ID=mRNA_M-pyrifera_M_contig96026.22135.1|Name=mRNA_M-pyrifera_M_contig96026.22135.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig96026:363..710- (Macrocystis pyrifera P11B4 male)
ATTAAGGTACTATTAAAGACAGGTTTTGTAGATCTCAATGCCAAAGATAA
AGAAGGCTGGACAGCTGTGCATTATGCTGCATGTTACGGCACGGTAGAGG
TGGTAACAGCTTTATTGGGAAGGATGCCGCCTTCGGCGGTTCAAGCTACA
ACAAAGTCTGGCGCAAATGCACTACAGTTGGTCGCTCGCAATACTGCCCA
TGGCGCAGGCATAATTAAGGCACTATTAAAGACAGGTTTTGTAGATATCA
ATGCCAAAGATAAAGAAGGCTGGACAGCTGTGCATTATGCTGCACGTTAT
GGTAATTCGGACACAATTATTGCGCTTATTAGTAGCACTCAGCCGCTAAT
TAAGGTACTATTAAAGACAGGTTTTGTAGATCTCAATGCCAAAGATAAAG
AAGGCTGGACAGCTGTGCATTATGCTGCATGTTACGGCACGGTAGAGGTG
GTAACAGCTTTATTGGGAAGGATGCCGCCTTCGGCGGTTCAAGCTACAAC
AAAGTCTGGCGCAAATGCACTACAGTTGGTCGCTCGCAATACTGCCCATG
GCGCAGGCATAATTAAGGCACTATTAAAGACAGGTTTTGTAGATATCAAT
GCCAAAGATAAAGAAGGCTGGACAGCTGTGCATTATGCTGCACGTTATGG
TAATTCGGACACAATTATTGCGCTTATTAGTAGCACTCAGCCGCTA
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