mRNA_M-pyrifera_M_contig96015.22132.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig96015.22132.1
Unique NamemRNA_M-pyrifera_M_contig96015.22132.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig96015.22132.1 vs. uniprot
Match: F0ZP43_DICPU (Fe2OG dioxygenase domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZP43_DICPU)

HSP 1 Score: 127 bits (318), Expect = 9.560e-35
Identity = 56/90 (62.22%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:    1 FAWKEGRLAFVLDNVFSEEECQDWIEMTEGKSYEPALVNIGGGRQMHMPDVRNNMRCIVDSEEMADKLFQRIKPFLPETIGRCKIVSLNE 270
            F  ++ ++AFV++NVF+E+EC++WI++TE + YE ALVNIG GRQ  M ++RNN RCI+DSEEMADKL+QRIK ++PETI  CK VSLNE
Sbjct:   23 FEPQQNKIAFVIENVFTEKECKEWIDLTEKQGYEKALVNIGYGRQKLMTNIRNNERCIIDSEEMADKLYQRIKNYIPETISNCKKVSLNE 112
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BLAST of mRNA_M-pyrifera_M_contig96015.22132.1 vs. uniprot
Match: D3BFG1_POLPP (Fe2OG dioxygenase domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BFG1_POLPP)

HSP 1 Score: 115 bits (287), Expect = 3.940e-30
Identity = 53/83 (63.86%), Postives = 65/83 (78.31%), Query Frame = 1 
Query:   22 LAFVLDNVFSEEECQDWIEMTEGKSYEPALVNIGGGRQMHMPDVRNNMRCIVDSEEMADKLFQRIKPFLPETIGRCKIVSLNE 270
            +AF L+NVFS+EECQ+WI +TE + YEPALVNIG GRQ  M DVRNN RCI+DSEEMA+K+F+RIK  LP  I    ++ LNE
Sbjct:   25 IAFTLENVFSKEECQEWIALTEKQGYEPALVNIGYGRQALMTDVRNNDRCIIDSEEMANKIFERIKHLLPAVIKNNNMIELNE 107
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BLAST of mRNA_M-pyrifera_M_contig96015.22132.1 vs. uniprot
Match: A0A8J4Q5I3_9MYCE (Fe2OG dioxygenase domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q5I3_9MYCE)

HSP 1 Score: 112 bits (280), Expect = 2.830e-29
Identity = 52/90 (57.78%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    1 FAWKEGRLAFVLDNVFSEEECQDWIEMTEGKSYEPALVNIGGGRQMHMPDVRNNMRCIVDSEEMADKLFQRIKPFLPETIGRCKIVSLNE 270
            F  +   LAF +DNVFS+EEC++WI  TE   YE ALVN+G G+Q  M D+RNN RCI+DSEEMADK++QR+K F+P+T      VSLNE
Sbjct:   11 FPKEANLLAFTIDNVFSKEECEEWIAHTEKIGYEKALVNVGNGQQRLMTDIRNNDRCIIDSEEMADKIYQRVKQFIPDTFHFKDKVSLNE 100
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BLAST of mRNA_M-pyrifera_M_contig96015.22132.1 vs. uniprot
Match: UPI001E1D2E0D (uncharacterized protein LOC123556340 isoform X1 n=2 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D2E0D)

HSP 1 Score: 112 bits (281), Expect = 6.870e-29
Identity = 53/86 (61.63%), Postives = 68/86 (79.07%), Query Frame = 1 
Query:   13 EGRLAFVLDNVFSEEECQDWIEMTEGKSYEPALVNIGGGRQMHMPDVRNNMRCIVDSEEMADKLFQRIKPFLPETIGRCKIVSLNE 270
            +G+LAFVL NVFS+EEC+D+I+ TE   YE ALVN+GGGRQ  M DVRNN RCI DS E AD+++QRIK ++PET    K+++LNE
Sbjct:   65 KGKLAFVLRNVFSDEECKDYIKKTEKMGYEDALVNVGGGRQCMMKDVRNNTRCIWDSFEEADRIWQRIKKYIPETWKSRKVMALNE 150
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BLAST of mRNA_M-pyrifera_M_contig96015.22132.1 vs. uniprot
Match: F1A584_DICPU (P4Hc domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A584_DICPU)

HSP 1 Score: 110 bits (276), Expect = 1.690e-28
Identity = 51/87 (58.62%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:   10 KEGRLAFVLDNVFSEEECQDWIEMTEGKSYEPALVNIGGGRQMHMPDVRNNMRCIVDSEEMADKLFQRIKPFLPETIGRCKIVSLNE 270
            K   +AFV+ +VFS EEC +WI +TE K YE AL+NIGGG Q+  P+VRNN RCI+DSEEMADK++QR+K  LP  +   + VSLNE
Sbjct:   17 KRKVIAFVIKDVFSSEECDEWINITEEKGYEKALLNIGGGEQILAPEVRNNDRCIIDSEEMADKIYQRVKHLLPNEMNYHEKVSLNE 103
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BLAST of mRNA_M-pyrifera_M_contig96015.22132.1 vs. uniprot
Match: Q54PP0_DICDI (Fe2OG dioxygenase domain-containing protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54PP0_DICDI)

HSP 1 Score: 110 bits (275), Expect = 5.790e-28
Identity = 49/83 (59.04%), Postives = 66/83 (79.52%), Query Frame = 1 
Query:   25 AFVLDNVFSEEECQDWIEMTEGKSYEPALVNIGGGRQMHMPDVRNNMRCIVDSEEMADKLFQRIKPFLPETIG-RCKIVSLNE 270
            A  +D+VF+EEEC++WI++TE   YEPALVNIG G+Q  M D+RNN RCI+DS EMADK++QR+K F+P T   + ++VSLNE
Sbjct:   21 AITIDDVFTEEECKEWIDLTEKTGYEPALVNIGYGQQQLMTDIRNNDRCIIDSVEMADKIYQRVKKFIPHTFNQKWEVVSLNE 103
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BLAST of mRNA_M-pyrifera_M_contig96015.22132.1 vs. uniprot
Match: A0A820VAE5_9BILA (Hypothetical protein n=1 Tax=Rotaria socialis TaxID=392032 RepID=A0A820VAE5_9BILA)

HSP 1 Score: 105 bits (263), Expect = 1.720e-27
Identity = 48/84 (57.14%), Postives = 65/84 (77.38%), Query Frame = 1 
Query:   16 GRLAFVLDNVFSEEECQDWIEMTEGKSYEPALVNIGGGRQMHMPDVRNNMRCIVDSEEMADKLFQRIKPFLPETIGRCKIVSLN 267
            G+LAF+L NVF+EEEC +WI++TE + Y+PALVN+G  R++ MPDVRNN RCI+D  +MA KLF RIK +LP+     ++V LN
Sbjct:   21 GKLAFILFNVFTEEECSEWIKLTEERCYKPALVNVGV-REVSMPDVRNNDRCIIDDVDMAKKLFDRIKSYLPDKWNSYQLVGLN 103
[Close]
BLAST of mRNA_M-pyrifera_M_contig96015.22132.1 vs. uniprot
Match: D3BIU9_POLPP (Fe2OG dioxygenase domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BIU9_POLPP)

HSP 1 Score: 107 bits (268), Expect = 2.570e-27
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:   22 LAFVLDNVFSEEECQDWIEMTEGKSYEPALVNIGGGRQMHMPDVRNNMRCIVDSEEMADKLFQRIKPFLPETIGRCKIVSLNE 270
            +AF L+NVFS+EEC+ WI +TE + YEPALVN+G G+Q+ M DVRNN RCI+DSEEMA+K++ RIK  LP       ++ LNE
Sbjct:   21 VAFTLENVFSKEECEQWIALTEKQGYEPALVNVGYGKQVLMTDVRNNDRCIIDSEEMANKIYDRIKHLLPADFHNHDMIELNE 103
[Close]
BLAST of mRNA_M-pyrifera_M_contig96015.22132.1 vs. uniprot
Match: A0A820IEW9_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A820IEW9_9BILA)

HSP 1 Score: 104 bits (260), Expect = 9.800e-27
Identity = 48/86 (55.81%), Postives = 63/86 (73.26%), Query Frame = 1 
Query:   13 EGRLAFVLDNVFSEEECQDWIEMTEGKSYEPALVNIGGGRQMHMPDVRNNMRCIVDSEEMADKLFQRIKPFLPETIGRCKIVSLNE 270
            + +LAF+L NVF+ +ECQDWIE+TE + Y PA VNIGGGR+  M D R++ RCI+D   MA+ LFQRI+ FLP+T     +V LNE
Sbjct:   21 QDKLAFILLNVFTPKECQDWIELTEQRGYSPAKVNIGGGREKLMTDFRDSDRCIIDDVNMANILFQRIESFLPKTCNDYHLVELNE 106
[Close]
BLAST of mRNA_M-pyrifera_M_contig96015.22132.1 vs. uniprot
Match: A0A817SFL2_9BILA (Hypothetical protein n=4 Tax=Rotaria TaxID=231623 RepID=A0A817SFL2_9BILA)

HSP 1 Score: 105 bits (263), Expect = 1.320e-26
Identity = 48/84 (57.14%), Postives = 65/84 (77.38%), Query Frame = 1 
Query:   16 GRLAFVLDNVFSEEECQDWIEMTEGKSYEPALVNIGGGRQMHMPDVRNNMRCIVDSEEMADKLFQRIKPFLPETIGRCKIVSLN 267
            G+LAF+L NVF+EEEC +WI++TE + Y+PALVN+G  R++ MPDVRNN RCI+D  +MA KLF RIK +LP+     ++V LN
Sbjct:   21 GKLAFILFNVFTEEECSEWIKLTEERCYKPALVNVGV-REVSMPDVRNNDRCIIDDVDMAKKLFDRIKSYLPDKWNSYQLVGLN 103
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig96015.22132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0ZP43_DICPU9.560e-3562.22Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
D3BFG1_POLPP3.940e-3063.86Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A8J4Q5I3_9MYCE2.830e-2957.78Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
UPI001E1D2E0D6.870e-2961.63uncharacterized protein LOC123556340 isoform X1 n=... [more]
F1A584_DICPU1.690e-2858.62P4Hc domain-containing protein n=1 Tax=Dictyosteli... [more]
Q54PP0_DICDI5.790e-2859.04Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A820VAE5_9BILA1.720e-2757.14Hypothetical protein n=1 Tax=Rotaria socialis TaxI... [more]
D3BIU9_POLPP2.570e-2757.83Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A820IEW9_9BILA9.800e-2755.81Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
A0A817SFL2_9BILA1.320e-2657.14Hypothetical protein n=4 Tax=Rotaria TaxID=231623 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig96015contigM-pyrifera_M_contig96015:455..724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.1
Seed ortholog evalue4.1e-27
Seed eggNOG ortholog5786.XP_003289189.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Prolyl 4-hydroxylase alpha subunit homologues.
EggNOG OGs2BV78@1,2S24K@2759,3XH4R@554915
COG Functional cat.E
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons1
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816875.1940746-CDS-M-pyrifera_M_contig96015:454..7241622816875.1940746-CDS-M-pyrifera_M_contig96015:454..724Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96015 455..724 +
1692278230.031321-CDS-M-pyrifera_M_contig96015:454..7241692278230.031321-CDS-M-pyrifera_M_contig96015:454..724Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig96015 455..724 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig96015.22132.1prot_M-pyrifera_M_contig96015.22132.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig96015 455..724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig96015.22132.1

>prot_M-pyrifera_M_contig96015.22132.1 ID=prot_M-pyrifera_M_contig96015.22132.1|Name=mRNA_M-pyrifera_M_contig96015.22132.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
FAWKEGRLAFVLDNVFSEEECQDWIEMTEGKSYEPALVNIGGGRQMHMPD
VRNNMRCIVDSEEMADKLFQRIKPFLPETIGRCKIVSLNE
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mRNA from alignment at M-pyrifera_M_contig96015:455..724+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig96015.22132.1 ID=mRNA_M-pyrifera_M_contig96015.22132.1|Name=mRNA_M-pyrifera_M_contig96015.22132.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig96015:455..724+ (Macrocystis pyrifera P11B4 male)
TTTGCCTGGAAAGAGGGCCGGCTGGCCTTCGTGCTTGACAACGTCTTCTC
AGAGGAAGAGTGCCAAGATTGGATTGAGATGACCGAGGGCAAGTCCTATG
AGCCCGCGCTGGTCAACATCGGCGGGGGACGGCAGATGCACATGCCTGAC
GTGCGTAACAACATGCGCTGCATCGTCGACTCGGAGGAGATGGCAGACAA
GCTCTTCCAGCGCATCAAGCCCTTCCTGCCAGAGACCATTGGCAGGTGCA
AGATTGTTTCGCTCAACGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig96015:455..724+

>mRNA_M-pyrifera_M_contig96015.22132.1 ID=mRNA_M-pyrifera_M_contig96015.22132.1|Name=mRNA_M-pyrifera_M_contig96015.22132.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig96015:455..724+ (Macrocystis pyrifera P11B4 male)
TTTGCCTGGAAAGAGGGCCGGCTGGCCTTCGTGCTTGACAACGTCTTCTC
AGAGGAAGAGTGCCAAGATTGGATTGAGATGACCGAGGGCAAGTCCTATG
AGCCCGCGCTGGTCAACATCGGCGGGGGACGGCAGATGCACATGCCTGAC
GTGCGTAACAACATGCGCTGCATCGTCGACTCGGAGGAGATGGCAGACAA
GCTCTTCCAGCGCATCAAGCCCTTCCTGCCAGAGACCATTGGCAGGTGCA
AGATTGTTTCGCTCAACGAATTTGCCTGGAAAGAGGGCCGGCTGGCCTTC
GTGCTTGACAACGTCTTCTCAGAGGAAGAGTGCCAAGATTGGATTGAGAT
GACCGAGGGCAAGTCCTATGAGCCCGCGCTGGTCAACATCGGCGGGGGAC
GGCAGATGCACATGCCTGACGTGCGTAACAACATGCGCTGCATCGTCGAC
TCGGAGGAGATGGCAGACAAGCTCTTCCAGCGCATCAAGCCCTTCCTGCC
AGAGACCATTGGCAGGTGCAAGATTGTTTCGCTCAACGAA
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