mRNA_M-pyrifera_M_contig9597.22128.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9597.22128.1
Unique NamemRNA_M-pyrifera_M_contig9597.22128.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9597.22128.1 vs. uniprot
Match: A0A6H5L6L3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6L3_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 9.100e-22
Identity = 54/107 (50.47%), Postives = 76/107 (71.03%), Query Frame = 1 
Query:    1 TSNSTTPNTVEDIDVEMISLDRFLAQLMRGDVGGLETLFSMLVPKIYLLADPE-----------IIPLILQERRWMVSRNISCWTGFAHSHLARYRKVQQKSLNMAR 288
            TSN  + NTV+D+DVE+ISL RF  QL+RG++GG+ETL SMLV  + L++DPE           I+P++++ERRWMVS  ++ W GF  SH+ +YR+V Q+S N AR
Sbjct:  401 TSNCDSRNTVDDVDVEIISLGRFFGQLIRGEIGGVETLHSMLVRDVELISDPEVYVPKYILRKQIVPIVVRERRWMVSSRLASWMGFILSHIHKYRRVTQES-NAAR 506
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BLAST of mRNA_M-pyrifera_M_contig9597.22128.1 vs. uniprot
Match: D7G3H5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3H5_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 6.750e-9
Identity = 31/53 (58.49%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 TSNSTTPNTVEDIDVEMISLDRFLAQLMRGDVGGLETLFSMLVPKIYLLADPE 159
            TSN  + NTV+D+D+E+ISL RF  QL+RG++GG+ETL SMLV  + L++DPE
Sbjct:  316 TSNCDSRNTVDDVDLEIISLGRFFGQLIRGEIGGVETLHSMLVRDVELISDPE 368
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9597.22128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6L3_9PHAE9.100e-2250.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3H5_ECTSI6.750e-958.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9597contigM-pyrifera_M_contig9597:5099..8255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size718
Cds size717
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9597.22128.1prot_M-pyrifera_M_contig9597.22128.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9597 5100..8255 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816874.972852-CDS-M-pyrifera_M_contig9597:5099..56571622816874.972852-CDS-M-pyrifera_M_contig9597:5099..5657Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9597 5100..5657 -
1692278229.8766391-CDS-M-pyrifera_M_contig9597:5099..56571692278229.8766391-CDS-M-pyrifera_M_contig9597:5099..5657Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9597 5100..5657 -
1622816874.9879766-CDS-M-pyrifera_M_contig9597:6013..60941622816874.9879766-CDS-M-pyrifera_M_contig9597:6013..6094Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9597 6014..6094 -
1692278229.8881736-CDS-M-pyrifera_M_contig9597:6013..60941692278229.8881736-CDS-M-pyrifera_M_contig9597:6013..6094Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9597 6014..6094 -
1622816875.000305-CDS-M-pyrifera_M_contig9597:8177..82551622816875.000305-CDS-M-pyrifera_M_contig9597:8177..8255Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9597 8178..8255 -
1692278229.8994148-CDS-M-pyrifera_M_contig9597:8177..82551692278229.8994148-CDS-M-pyrifera_M_contig9597:8177..8255Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9597 8178..8255 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9597.22128.1

>prot_M-pyrifera_M_contig9597.22128.1 ID=prot_M-pyrifera_M_contig9597.22128.1|Name=mRNA_M-pyrifera_M_contig9597.22128.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=239bp
TSNSTTPNTVEDIDVEMISLDRFLAQLMRGDVGGLETLFSMLVPKIYLLA
DPEIIPLILQERRWMVSRNISCWTGFAHSHLARYRKVQQKSLNMARKARF
KKQQRLEALGKKDASAPTITSSSASTSTPESISSPTSTSSLSSTSISYLT
SASTSDSASTLASTSNSATTSSSTSGSTSSSAPNVNSTLTLTPPSFSTSS
STSASSGGREVSPSSVAVAGSVGEEEQGIVRKGDGEQKT
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mRNA from alignment at M-pyrifera_M_contig9597:5099..8255-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9597.22128.1 ID=mRNA_M-pyrifera_M_contig9597.22128.1|Name=mRNA_M-pyrifera_M_contig9597.22128.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3157bp|location=Sequence derived from alignment at M-pyrifera_M_contig9597:5099..8255- (Macrocystis pyrifera P11B4 male)
ACCTCGAACAGCACCACCCCGAACACGGTAGAGGACATCGACGTGGAGAT
GATCAGCCTCGACCGTTTCCTGGCGCAGGTGCGGAGACGTGCTTATAGCA
GGGAATCTGAACCAACAGGCACCTGTGTTTGTATTGCCCACAAAACGTAT
ACCAAGTGCACATGTTTTTTTAGGACAAATCGACAACTGGAACCACCTCT
ACCCCCGTTATTTTCCTGTGGGACATCCCGTAATTCTGCTTTAGCTTCGA
ATTTTTTCATCGGTCCGTGATTCGGCAAGGCGTATGTGAGCGAACTTGGT
GCACTCCCGTCATGTCAGTGTGCCACAGCGACAGCATTTTCCGTGCTCTC
CGTCGAGGTGGACCTCGTCGCTGAAATTTGAAAGCGTGGCTCCACGCGCT
TGAATATGCGATCTCTTGTGCTGCAGTCAACTTTTTTTTTTCCTGCGTTA
GAACGACCAGGAGAATCACAGGAGGAGCTACTCGTACATACATACCAGTG
TTGACCATAGGCTCAGTTGTTCTTTCGCTGCTCCTTCCAAGAGCGCAGCC
AGTCTGCAGCAGCAAAGCCAGTGCGTCGGGAGACAACACGGAGTTCGAGT
TTTTTGGCATGTTTCGACTGGCGCAAGCGAGAGCACGAGAGAAAATTTGT
GTACAGTATACTGCGTAGCCCCTGAGTTCCTCCTGGTAGTTCTACAGCAG
AAACAATACTTGGCTTACGGTACAAGAAACCGCACATTCAAGCACCTGGA
ACCACGTTTTCCAAAAAAATCAGCGACGAGGTTTTTGGAGTGTCAGGGTT
GGGGTTGGGGTGGGCGGTCCAACCCTGTTGGGAGTTCGGAGGGGAGAACG
CTTTGACGATAAAAAAGTAACGATTGCAACAACGCCCACTCTGTATGGGT
TGGGGAACGATACCAAGATTGGTGTGCGAGCTACGATGGTTGATGCAAGG
AGTCAGTCGCACGGCGCGGGAGGCAGCATTGTGACGATTGCAAACAACGG
CCGCTTTGTAGGGGTTGGGGGACGATACCAAGATTGGTGTCCGAGCTACG
ATGGTTGAAAGCAAGGAGTCAGTCGCACGGCAAGGGAGGCAGCATTGCCC
CTCTCGTACTGCTGGGCGCTCACGCTGCTCGTAGACGGCCTATAACACCA
ATTTTACCGACCGTTGTGTTGGTCGCTACCTTTAACACACAGTGGGGTTA
AGGTCGAATTGGAAGAAATGGGGTCGGAATCAGGGTTGGGGTTTGTGTGG
TGTTACGGCATATCGCCTCGAAGCCCCTTGAAAGGCAGGTTAGTTACCTG
AGCTTTAGGCCATGGGAACGTGTTTGTATTACTCGGGAGACTAGGGTGCG
GGTTGGGGGTTGGGTTTAGGGCCGGGGTTAGAGTTGGGGTTAGTGTTGTG
TTGCCTTGAAATACCTTGAAATGTCGGCAGTTTACTCGAGTTTACGTAAT
GGCAATATATTTGTTGTTCTTCGGAGGCTAGAGTGCGGGTTGGAGTTGGG
GTTCGGGTCGGGGGTTGGGTCGGGGTTCGTGTGGTGTTGTGGTATTGCCG
TGAAAACACCTTGAAGTACCGATCATTACCTGGGTTGAGGTAATGGGACT
TGCTTTTGCAACACTTGGGAGGCTAGGGTGCGGGCTGGGGTTGCGGGTTG
GGTTTGAGTATGGTTTGGGGTTGCTGCTGCCCCCCACCTTTTCTTCTATG
CGGGGCGCACAAGGTCCGAACGATGAAAATATCCGTAGCAGTACAGCGTC
TCTGCGAGGACGAAACGACCTGCTCCTCCGCGGGCCGTCGCTTGTTTTTG
GACTCCGCCGCTGTGGTTGGTGGCGTTCCCGTGTTCTACACGGCTCGCAT
CGCGAGACTAAGGGGGGCAGAAATTGCTTGTGTAGTTGCGAGGGGGGGGC
GGGTCGTTATTTTTTGTCGACGGGGTCGTTGTTTATTGTCCCCTCGCGTG
CCTATGTGTTTTGTGTTTGTCGCGGCAGTCTTCTTTGAGCCACAGAGTCG
GAGTTACGTTTAGCCCAGTCTCTCACTTAAAAAGGCCATGAGGTTACACG
CTACTCTACCTCAGTTCCTGACGTCCTGTTTTCCTTCCTTGTTTCCACCC
TTCCTCCTCCCCACCTGCCCCTCTCCTCATGTTCTTATTCGGCGTTTATC
CAATCTCGAAGCTGATGAGGGGAGACGTAGGTGGGCTGGAAACCCTGTTT
TCCATGCTCGTGCCGAAGATCTACCTGCTTGCAGACCCGGAGGTAATCCC
CATGGGCTCACCGCTCAACTTCTGAAGAAATACCAGGCGCATTGTTTCGT
TTCTTCCATCGATTTAATGTTGTACCTGTTGTCTCGCTTTCTCGAAACAT
TAACGGCTGGGGCCTGACATGGGAGTTAGGGGCTTAGTTTAGGGCTAAGT
GGTGCAAAAATCTCTGGTGAGCCCGAGTATACAAAGATCACGCTACGCAT
GTAAGAGGACCGTTTTTTCGGTTAGCATGCACTAGGCTACGGAGTGCCCG
CAGCCGAGCCCCGATCGGTGCACGTCCTCCTCTCACCGTATGCCTTTCTG
CTTGCCTCCCCGCTTGCCGAAAACGCCGCAACACATCGCAAACTCCAGAT
CATCCCTCTCATCTTGCAAGAGCGGCGTTGGATGGTGTCCAGGAACATTT
CGTGCTGGACCGGCTTCGCGCACAGCCACCTCGCCAGATATAGGAAGGTC
CAGCAGAAGTCACTCAACATGGCCCGGAAGGCGAGGTTCAAGAAGCAGCA
GAGGCTGGAAGCCCTGGGGAAGAAGGACGCCTCGGCGCCAACTATAACTT
CAAGTTCAGCTTCGACCTCAACTCCGGAATCGATTTCATCTCCAACTTCG
ACATCAAGCTTAAGTTCGACTTCAATTTCGTATTTAACTTCAGCTTCAAC
TTCGGATTCAGCTTCGACACTGGCGTCGACCTCAAATTCGGCTACAACTT
CAAGTTCAACTTCGGGTTCAACTTCAAGTTCAGCACCAAATGTAAATTCG
ACCTTAACCTTAACCCCACCTTCATTTTCAACTTCAAGTTCAACCTCGGC
GTCGTCGGGAGGACGTGAAGTGTCTCCTTCGTCCGTCGCGGTGGCTGGAT
CTGTTGGCGAAGAAGAACAAGGCATCGTAAGGAAAGGAGACGGAGAGCAG
AAAACGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9597:5099..8255-

>mRNA_M-pyrifera_M_contig9597.22128.1 ID=mRNA_M-pyrifera_M_contig9597.22128.1|Name=mRNA_M-pyrifera_M_contig9597.22128.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1434bp|location=Sequence derived from alignment at M-pyrifera_M_contig9597:5099..8255- (Macrocystis pyrifera P11B4 male)
ACCTCGAACAGCACCACCCCGAACACGGTAGAGGACATCGACGTGGAGAT
GATCAGCCTCGACCGTTTCCTGGCGCAGACCTCGAACAGCACCACCCCGA
ACACGGTAGAGGACATCGACGTGGAGATGATCAGCCTCGACCGTTTCCTG
GCGCAGCTGATGAGGGGAGACGTAGGTGGGCTGGAAACCCTGTTTTCCAT
GCTCGTGCCGAAGATCTACCTGCTTGCAGACCCGGAGCTGATGAGGGGAG
ACGTAGGTGGGCTGGAAACCCTGTTTTCCATGCTCGTGCCGAAGATCTAC
CTGCTTGCAGACCCGGAGATCATCCCTCTCATCTTGCAAGAGCGGCGTTG
GATGGTGTCCAGGAACATTTCGTGCTGGACCGGCTTCGCGCACAGCCACC
TCGCCAGATATAGGAAGGTCCAGCAGAAGTCACTCAACATGGCCCGGAAG
GCGAGGTTCAAGAAGCAGCAGAGGCTGGAAGCCCTGGGGAAGAAGGACGC
CTCGGCGCCAACTATAACTTCAAGTTCAGCTTCGACCTCAACTCCGGAAT
CGATTTCATCTCCAACTTCGACATCAAGCTTAAGTTCGACTTCAATTTCG
TATTTAACTTCAGCTTCAACTTCGGATTCAGCTTCGACACTGGCGTCGAC
CTCAAATTCGGCTACAACTTCAAGTTCAACTTCGGGTTCAACTTCAAGTT
CAGCACCAAATGTAAATTCGACCTTAACCTTAACCCCACCTTCATTTTCA
ACTTCAAGTTCAACCTCGGCGTCGTCGGGAGGACGTGAAGTGTCTCCTTC
GTCCGTCGCGGTGGCTGGATCTGTTGGCGAAGAAGAACAAGGCATCGTAA
GGAAAGGAGACGGAGAGCAGAAAACGATCATCCCTCTCATCTTGCAAGAG
CGGCGTTGGATGGTGTCCAGGAACATTTCGTGCTGGACCGGCTTCGCGCA
CAGCCACCTCGCCAGATATAGGAAGGTCCAGCAGAAGTCACTCAACATGG
CCCGGAAGGCGAGGTTCAAGAAGCAGCAGAGGCTGGAAGCCCTGGGGAAG
AAGGACGCCTCGGCGCCAACTATAACTTCAAGTTCAGCTTCGACCTCAAC
TCCGGAATCGATTTCATCTCCAACTTCGACATCAAGCTTAAGTTCGACTT
CAATTTCGTATTTAACTTCAGCTTCAACTTCGGATTCAGCTTCGACACTG
GCGTCGACCTCAAATTCGGCTACAACTTCAAGTTCAACTTCGGGTTCAAC
TTCAAGTTCAGCACCAAATGTAAATTCGACCTTAACCTTAACCCCACCTT
CATTTTCAACTTCAAGTTCAACCTCGGCGTCGTCGGGAGGACGTGAAGTG
TCTCCTTCGTCCGTCGCGGTGGCTGGATCTGTTGGCGAAGAAGAACAAGG
CATCGTAAGGAAAGGAGACGGAGAGCAGAAAACG
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