mRNA_M-pyrifera_M_contig95927.22112.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95927.22112.1
Unique NamemRNA_M-pyrifera_M_contig95927.22112.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig95927.22112.1 vs. uniprot
Match: A0A7S4M3P4_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M3P4_9EUKA)

HSP 1 Score: 131 bits (330), Expect = 3.670e-34
Identity = 65/136 (47.79%), Postives = 92/136 (67.65%), Query Frame = 1 
Query:    1 EVLWIRLVADNLSCIGVMISAYLVSMGYYAADPVSAFLISVAVIYSSVPLAKETASILLLATPHQAKDQLYACVGKINALDGVLGCSEERFWTASSGRLVASLKVRLRNDAKESDVLHSTYQIFGSLVSELTVQIE 408
            +VLW+RLV DNL   GV  SA+    GY+ ADP+ A LISV VIY+S+PLAK+T  +LLLATP+  K  LY C+G++ +++G+L C+ E FWT+S G +V SL+V + + A E + L     IF   +  LTVQ++
Sbjct:  217 QVLWVRLVTDNLVSFGVSFSAFCSQYGYHEADPIVAGLISVVVIYTSIPLAKQTKDMLLLATPNHLKRDLYRCLGEVLSVEGILECAHEHFWTSSHGTIVGSLQVTIADQADEQETLQRVNSIFRPYIQNLTVQVQ 352
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BLAST of mRNA_M-pyrifera_M_contig95927.22112.1 vs. uniprot
Match: C3YT19_BRAFL (Uncharacterized protein n=4 Tax=Branchiostoma TaxID=7737 RepID=C3YT19_BRAFL)

HSP 1 Score: 82.0 bits (201), Expect = 9.860e-16
Identity = 46/135 (34.07%), Postives = 81/135 (60.00%), Query Frame = 1 
Query:   10 WIRLVADNLSCIGVMISAYLVSM-GYYAADPVSAFLISVAVIYSSVPLAKETASILLLATPHQAKDQLYACVGKINALDGVLGCSEERFWTASSGRLVASLKVRLRNDAKESDVLHSTYQIFGSL-VSELTVQIE 408
            ++ ++AD L  +GV+ISA+L+   G+  ADP+ + +I+  +  S++PL +++ SIL+  TP+    QL  C  ++ AL+GV    E  FWT  S   + ++KV +  +A    +L +T+ IF  + V +L VQI+
Sbjct:  235 FLHILADTLGSVGVIISAFLMQQFGWMIADPICSMIIATLIGVSTIPLIRDSVSILMQRTPYDLDHQLPGCYQRVMALEGVYSVHEPHFWTLCSDVYIGTVKVEVAPEADAKYILSATHNIFTQVGVRQLYVQID 369
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BLAST of mRNA_M-pyrifera_M_contig95927.22112.1 vs. uniprot
Match: UPI001CFDD35E (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFDD35E)

HSP 1 Score: 80.9 bits (198), Expect = 3.530e-15
Identity = 46/134 (34.33%), Postives = 75/134 (55.97%), Query Frame = 1 
Query:   10 WIRLVADNLSCIGVMISAYLVS-MGYYAADPVSAFLISVAVIYSSVPLAKETASILLLATPHQAKDQLYACVGKINALDGVLGCSEERFWTASSGRLVASLKVRLRNDAKESDVLHSTYQIFGSLVSELTVQIE 408
            ++ ++AD L  IGV+ S  +V   G+Y ADP+ + +ISV ++Y+S+PL   ++ +LL  TP Q + ++  CV +I  L+GV+      FW   S   V S KV + N + E  +L     IF +   +L + IE
Sbjct:  305 YLHMIADALGSIGVITSTLIVQYFGWYIADPICSLIISVMILYTSIPLITNSSRVLLQRTPIQYEHKINECVKEILQLEGVVQVRNLHFWVLKSNLNVGSCKVMITNQSNEQTILKQVTDIFRNYRCDLDMTIE 438
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BLAST of mRNA_M-pyrifera_M_contig95927.22112.1 vs. uniprot
Match: UPI00139007F7 (zinc transporter 7 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00139007F7)

HSP 1 Score: 80.1 bits (196), Expect = 4.170e-15
Identity = 46/138 (33.33%), Postives = 80/138 (57.97%), Query Frame = 1 
Query:    1 EVLWIRLVADNLSCIGVMISAYLV-SMGYYAADPVSAFLISVAVIYSSVPLAKETASILLLATPHQAKDQLYACVGKINALDGVLGCSEERFWTASSGRLVASLKVRLRNDAKESDVLHSTYQIFGSL-VSELTVQIE 408
            E +++ ++AD L  +GV+ISA L+   G+  ADP+ +  I+V +++S +PL KE+  +L+  TP Q +  L+    ++N ++ V    +  FWT  S   V SL++ +  +A    +L +T+ IF    V +L VQIE
Sbjct:  208 EGVFLHVLADTLGSVGVIISAGLIHQFGWMMADPICSMFIAVLIVFSVIPLLKESTGVLMQRTPPQLEKILHISYQRVNQIEDVYSIQDPHFWTLCSNNWVGSLRLLVAPNADTHKILSTTHHIFNEAGVKQLYVQIE 345
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BLAST of mRNA_M-pyrifera_M_contig95927.22112.1 vs. uniprot
Match: UPI00077A8B5D (zinc transporter 7-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A8B5D)

HSP 1 Score: 77.0 bits (188), Expect = 4.690e-15
Identity = 47/138 (34.06%), Postives = 77/138 (55.80%), Query Frame = 1 
Query:    1 EVLWIRLVADNLSCIGVMISAYLVSM-GYYAADPVSAFLISVAVIYSSVPLAKETASILLLATPHQAKDQLYACVGKINALDGVLGCSEERFWTASSGRLVASLKVRLRNDAKESDVLHSTYQIFGSL-VSELTVQIE 408
            E +++ ++AD L  IGV+ISA L+   G+  ADP+ +  ISV +++S +PL KE+  IL+   P   +  ++    ++N +D V    +  FW  SS   V +L++ +   A    +L  T+ IF  L V +L VQIE
Sbjct:   29 EGVFLHVMADTLGSIGVIISAGLIKQFGWMLADPICSMFISVLIVFSVIPLLKESVGILMQRIPTGLEKNVHIAYQRVNQMDDVFSIQDPHFWALSSNVWVGTLRLLVAPSADTHKILSQTHHIFMELGVKQLYVQIE 166
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BLAST of mRNA_M-pyrifera_M_contig95927.22112.1 vs. uniprot
Match: UPI000A2A8CD2 (zinc transporter 7 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A8CD2)

HSP 1 Score: 79.7 bits (195), Expect = 6.370e-15
Identity = 44/138 (31.88%), Postives = 80/138 (57.97%), Query Frame = 1 
Query:    1 EVLWIRLVADNLSCIGVMISAYLV-SMGYYAADPVSAFLISVAVIYSSVPLAKETASILLLATPHQAKDQLYACVGKINALDGVLGCSEERFWTASSGRLVASLKVRLRNDAKESDVLHSTYQIFGSL-VSELTVQIE 408
            E +++ ++AD L  +GV+ISA L+   G+  ADP+ +  ISV +++S +PL +++  IL+  TP   +  L+    ++N L+ V    +  FWT  S   + +L++ +  +A    +L +T+ IF  + V +L VQIE
Sbjct:  223 EGVFLHVLADTLGSVGVIISAMLIHQFGWMMADPICSMFISVLIVFSVIPLLRDSTGILMQRTPKSLESVLHIAYQRVNQLENVYSIQDPHFWTLDSENSIGTLRLLVAPNADTHKILSATHHIFNEVGVKQLYVQIE 360
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BLAST of mRNA_M-pyrifera_M_contig95927.22112.1 vs. uniprot
Match: A0A6P8HGM9_ACTTE (zinc transporter 7-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HGM9_ACTTE)

HSP 1 Score: 79.7 bits (195), Expect = 6.450e-15
Identity = 44/138 (31.88%), Postives = 79/138 (57.25%), Query Frame = 1 
Query:    1 EVLWIRLVADNLSCIGVMISAYLV-SMGYYAADPVSAFLISVAVIYSSVPLAKETASILLLATPHQAKDQLYACVGKINALDGVLGCSEERFWTASSGRLVASLKVRLRNDAKESDVLHSTYQIFGSL-VSELTVQIE 408
            E +++ ++AD L  +GV+ISA L+   G+  ADP+ +  ISV +++S +PL +++  IL+  TP   +  L+    ++N ++ V    +  FWT  S   + +L+V +  ++    +L ST+ IF  + V  L VQIE
Sbjct:  225 EGVFLHVLADTLGSVGVIISAILIHQFGWMLADPICSMFISVLIVFSVIPLIRDSTGILMQRTPKALESVLHIAYQRVNQIENVYSIQDPHFWTLDSENFIGTLRVLIAPNSDIHKILSSTHHIFNEIGVKHLYVQIE 362
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BLAST of mRNA_M-pyrifera_M_contig95927.22112.1 vs. uniprot
Match: A0A6A5BPY6_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BPY6_NAEFO)

HSP 1 Score: 80.1 bits (196), Expect = 6.940e-15
Identity = 45/134 (33.58%), Postives = 75/134 (55.97%), Query Frame = 1 
Query:   10 WIRLVADNLSCIGVMISAYLVS-MGYYAADPVSAFLISVAVIYSSVPLAKETASILLLATPHQAKDQLYACVGKINALDGVLGCSEERFWTASSGRLVASLKVRLRNDAKESDVLHSTYQIFGSLVSELTVQIE 408
            ++ ++AD L  IGV+ S  +V  +G+Y ADP+ + +ISV ++Y+S+PL   ++ +LL  TP Q + ++  CV ++  L+GV+      FW   S   V S KV + N + E  +L     IF +    L + IE
Sbjct:  344 YLHMIADALGSIGVITSTLIVQYLGWYIADPICSLIISVMILYTSIPLITNSSRVLLQRTPIQHEHKINECVKEVLQLEGVVQVRNLHFWVLKSNLNVGSCKVLISNQSNEQTILKQVTNIFRNYRCNLDMTIE 477
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BLAST of mRNA_M-pyrifera_M_contig95927.22112.1 vs. uniprot
Match: UPI000719EB65 (zinc transporter 7-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719EB65)

HSP 1 Score: 78.6 bits (192), Expect = 1.790e-14
Identity = 46/135 (34.07%), Postives = 79/135 (58.52%), Query Frame = 1 
Query:   10 WIRLVADNLSCIGVMISAYLVSM-GYYAADPVSAFLISVAVIYSSVPLAKETASILLLATPHQAKDQLYACVGKINALDGVLGCSEERFWTASSGRLVASLKVRLRNDAKESDVLHSTYQIFGSL-VSELTVQIE 408
            ++ ++AD L  +GV+ SA L+   G+  ADP+ +  I+V +  S++PL +++ SIL++ TP Q    L     +++ L+GV    E  FWT  S   V ++K+ + N+A    +L ST+ IF  + V +L VQI+
Sbjct:  238 FLHILADTLGSVGVIFSAILMHFFGWMIADPLCSMFIAVLIAISTIPLLRDSVSILMMRTPTQLDFTLPEAYSRVSHLEGVYSVQEPHFWTLCSDIYVGTVKLEVANNADMQYILSSTHNIFAQIGVRQLYVQID 372
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BLAST of mRNA_M-pyrifera_M_contig95927.22112.1 vs. uniprot
Match: UPI001CF5EB4A (zinc transporter 7-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF5EB4A)

HSP 1 Score: 75.9 bits (185), Expect = 1.750e-13
Identity = 46/138 (33.33%), Postives = 77/138 (55.80%), Query Frame = 1 
Query:    1 EVLWIRLVADNLSCIGVMISAYLVSM-GYYAADPVSAFLISVAVIYSSVPLAKETASILLLATPHQAKDQLYACVGKINALDGVLGCSEERFWTASSGRLVASLKVRLRNDAKESDVLHSTYQIFGSL-VSELTVQIE 408
            E +++ ++AD L  IGV+ISA L+   G+  ADP+ +  ISV +++S +PL +E+  IL+   P   +  ++    ++N +D V    +  FW  SS   V +L++ +   A    +L  T+ IF  L V +L VQIE
Sbjct:  249 EGVFLHVMADTLGSIGVIISAGLIKQFGWMLADPICSMFISVLIVFSVIPLLRESVGILMQRIPTGLEKNVHIAYQRVNQMDDVFSIQDPHFWALSSNVWVGTLRLLVAPSADTHKILSQTHHIFMELGVKQLYVQIE 386
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95927.22112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A7S4M3P4_9EUKA3.670e-3447.79Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
C3YT19_BRAFL9.860e-1634.07Uncharacterized protein n=4 Tax=Branchiostoma TaxI... [more]
UPI001CFDD35E3.530e-1534.33uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
UPI00139007F74.170e-1533.33zinc transporter 7 n=1 Tax=Nematostella vectensis ... [more]
UPI00077A8B5D4.690e-1534.06zinc transporter 7-like n=1 Tax=Acropora digitifer... [more]
UPI000A2A8CD26.370e-1531.88zinc transporter 7 n=1 Tax=Exaiptasia diaphana Tax... [more]
A0A6P8HGM9_ACTTE6.450e-1531.88zinc transporter 7-like n=1 Tax=Actinia tenebrosa ... [more]
A0A6A5BPY6_NAEFO6.940e-1533.58Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
UPI000719EB651.790e-1434.07zinc transporter 7-like n=1 Tax=Priapulus caudatus... [more]
UPI001CF5EB4A1.750e-1333.33zinc transporter 7-like n=1 Tax=Acropora millepora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95927contigM-pyrifera_M_contig95927:96..563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score84.7
Seed ortholog evalue3.6e-14
Seed eggNOG ortholog6412.HelroP98434
Preferred nameSLC30A5
KEGG koko:K14692
KEGG TC2.A.4.4.3,2.A.4.4.5
Hectar predicted targeting categoryother localisation
GOsGO:0000041,GO:0003674,GO:0005215,GO:0005385,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005794,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006824,GO:0006829,GO:0006873,GO:0006875,GO:0006882,GO:0008150,GO:0008270,GO:0008324,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0010155,GO:0012505,GO:0012506,GO:0015075,GO:0015318,GO:0016020,GO:0016021,GO:0016324,GO:0019725,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0030141,GO:0030659,GO:0030667,GO:0031090,GO:0031224,GO:0031226,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032879,GO:0034220,GO:0034762,GO:0034765,GO:0042221,GO:0042592,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043269,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045177,GO:0046872,GO:0046873,GO:0046914,GO:0046915,GO:0046916,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051049,GO:0051179,GO:0051234,GO:0055065,GO:0055069,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0061088,GO:0065007,GO:0065008,GO:0070013,GO:0070838,GO:0071577,GO:0071944,GO:0072503,GO:0072507,GO:0072509,GO:0072511,GO:0097708,GO:0098588,GO:0098590,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098805,GO:0099503,GO:1904062
EggNOG free text desc.regulation of sequestering of zinc ion
EggNOG OGs38DVB@33154,3BAWZ@33208,3CRI5@33213,COG1230@1,KOG1484@2759
COG Functional cat.P
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons2
Model size408
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816874.1671605-CDS-M-pyrifera_M_contig95927:95..1721622816874.1671605-CDS-M-pyrifera_M_contig95927:95..172Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95927 96..172 +
1692278229.387323-CDS-M-pyrifera_M_contig95927:95..1721692278229.387323-CDS-M-pyrifera_M_contig95927:95..172Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95927 96..172 +
1622816874.1821966-CDS-M-pyrifera_M_contig95927:232..5631622816874.1821966-CDS-M-pyrifera_M_contig95927:232..563Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95927 233..563 +
1692278229.4011774-CDS-M-pyrifera_M_contig95927:232..5631692278229.4011774-CDS-M-pyrifera_M_contig95927:232..563Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95927 233..563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95927.22112.1prot_M-pyrifera_M_contig95927.22112.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95927 96..563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95927.22112.1

>prot_M-pyrifera_M_contig95927.22112.1 ID=prot_M-pyrifera_M_contig95927.22112.1|Name=mRNA_M-pyrifera_M_contig95927.22112.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=136bp
EVLWIRLVADNLSCIGVMISAYLVSMGYYAADPVSAFLISVAVIYSSVPL
AKETASILLLATPHQAKDQLYACVGKINALDGVLGCSEERFWTASSGRLV
ASLKVRLRNDAKESDVLHSTYQIFGSLVSELTVQIE
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mRNA from alignment at M-pyrifera_M_contig95927:96..563+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95927.22112.1 ID=mRNA_M-pyrifera_M_contig95927.22112.1|Name=mRNA_M-pyrifera_M_contig95927.22112.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig95927:96..563+ (Macrocystis pyrifera P11B4 male)
GAGGTGCTGTGGATCAGACTTGTTGCTGACAACCTCTCTTGCATTGGTGT
CATGATATCGGCCTACCTGGTCTCCATGTATGCAATGCTCGCACCCCCCG
AAGCGCGAGCGCTTGCAATTTGTTGACCGTCTTCTAGGGGCTACTATGCG
GCAGATCCTGTATCGGCCTTCCTCATTTCTGTTGCTGTCATCTACTCCAG
CGTACCTTTGGCCAAGGAGACTGCGAGCATTCTTCTCCTGGCCACACCAC
ACCAGGCCAAGGACCAGCTCTACGCCTGCGTTGGAAAGATCAATGCCCTT
GATGGTGTCCTGGGTTGCAGCGAAGAACGCTTTTGGACTGCCAGCTCGGG
CCGTTTGGTGGCGAGCTTGAAGGTCCGCCTCAGGAACGATGCCAAGGAGA
GCGACGTGCTCCACTCCACGTACCAGATCTTCGGCAGCCTTGTGAGCGAA
CTCACTGTCCAGATTGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95927:96..563+

>mRNA_M-pyrifera_M_contig95927.22112.1 ID=mRNA_M-pyrifera_M_contig95927.22112.1|Name=mRNA_M-pyrifera_M_contig95927.22112.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig95927:96..563+ (Macrocystis pyrifera P11B4 male)
GAGGTGCTGTGGATCAGACTTGTTGCTGACAACCTCTCTTGCATTGGTGT
CATGATATCGGCCTACCTGGTCTCCATGAGGTGCTGTGGATCAGACTTGT
TGCTGACAACCTCTCTTGCATTGGTGTCATGATATCGGCCTACCTGGTCT
CCATGGGCTACTATGCGGCAGATCCTGTATCGGCCTTCCTCATTTCTGTT
GCTGTCATCTACTCCAGCGTACCTTTGGCCAAGGAGACTGCGAGCATTCT
TCTCCTGGCCACACCACACCAGGCCAAGGACCAGCTCTACGCCTGCGTTG
GAAAGATCAATGCCCTTGATGGTGTCCTGGGTTGCAGCGAAGAACGCTTT
TGGACTGCCAGCTCGGGCCGTTTGGTGGCGAGCTTGAAGGTCCGCCTCAG
GAACGATGCCAAGGAGAGCGACGTGCTCCACTCCACGTACCAGATCTTCG
GCAGCCTTGTGAGCGAACTCACTGTCCAGATTGAGGGGCTACTATGCGGC
AGATCCTGTATCGGCCTTCCTCATTTCTGTTGCTGTCATCTACTCCAGCG
TACCTTTGGCCAAGGAGACTGCGAGCATTCTTCTCCTGGCCACACCACAC
CAGGCCAAGGACCAGCTCTACGCCTGCGTTGGAAAGATCAATGCCCTTGA
TGGTGTCCTGGGTTGCAGCGAAGAACGCTTTTGGACTGCCAGCTCGGGCC
GTTTGGTGGCGAGCTTGAAGGTCCGCCTCAGGAACGATGCCAAGGAGAGC
GACGTGCTCCACTCCACGTACCAGATCTTCGGCAGCCTTGTGAGCGAACT
CACTGTCCAGATTGAG
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