mRNA_M-pyrifera_M_contig95920.22109.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95920.22109.1
Unique NamemRNA_M-pyrifera_M_contig95920.22109.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig95920.22109.1 vs. uniprot
Match: L8GYB3_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GYB3_ACACA)

HSP 1 Score: 97.8 bits (242), Expect = 7.800e-21
Identity = 48/149 (32.21%), Postives = 93/149 (62.42%), Query Frame = 1
Query:    1 DAWLVAGDLTDKQSGFAFNFGVALQILDDVQDVRRDVRDNQDTMCTLAFKQNHPEEFEILTRRLLNFLFVLINPESNGITDKESDDYAMRKSMVNMCYSIVLKAIAKDSYLFTENFAKEIEWYSPLPFSSMKKIVMIKKLMTLVRKDQI 447
            D +LV G +T++++ FAF FGV LQ++DD+QD  +D   N  T+ T  + +   +  ++   +    L++ I+P+   I +K SD   +R +++ M ++I+LKAIAK  Y+FTE F + +  ++P+P   ++++  + +++ +VR +QI
Sbjct:  556 DGYLVHGVMTEEEALFAFGFGVCLQLVDDLQDTLKDTEVNHQTLFTYGWTRK--QSADVKAYKAFQLLYLFIDPDHYDIDEKGSD---LRGALLKMTHTIMLKAIAKYCYIFTEAFVEALAQFAPIPIQHLQRVNNMARMLQMVRNNQI 699          
BLAST of mRNA_M-pyrifera_M_contig95920.22109.1 vs. uniprot
Match: A0A7S2EY93_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Stereomyxa ramosa TaxID=1078864 RepID=A0A7S2EY93_9EUKA)

HSP 1 Score: 89.0 bits (219), Expect = 1.600e-19
Identity = 47/114 (41.23%), Postives = 72/114 (63.16%), Query Frame = 1
Query:    1 DAWLVAGDLTDKQSGFAFNFGVALQILDDVQDVRRDVRDNQDTMCTLAFKQNHPEEFEILTRRLLNFLFVLINPESNGITDKESDDYAMRKSMVNMCYSIVLKAIAKDSYLFTE 342
            D +LV GD++++ + F F  GVALQ++DD+QD  RD+  NQ TMCTL F    P   + +  RLL  + V++NP+   + D+    + +R +M+ M  +I +KAIAK  Y+FTE
Sbjct:   57 DGYLVHGDMSEEDALFTFGLGVALQLVDDLQDTSRDIAVNQHTMCTLPFLLKQP--CDSVACRLLQLMEVMVNPDHYSLEDRA---HKLRYAMLKMTNTIAMKAIAKYCYIFTE 165          
BLAST of mRNA_M-pyrifera_M_contig95920.22109.1 vs. uniprot
Match: L8GXJ2_ACACA (Carboxylesterase superfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GXJ2_ACACA)

HSP 1 Score: 75.1 bits (183), Expect = 2.140e-13
Identity = 37/126 (29.37%), Postives = 76/126 (60.32%), Query Frame = 1
Query:   70 LQILDDVQDVRRDVRDNQDTMCTLAFKQNHPEEFEILTRRLLNFLFVLINPESNGITDKESDDYAMRKSMVNMCYSIVLKAIAKDSYLFTENFAKEIEWYSPLPFSSMKKIVMIKKLMTLVRKDQI 447
            LQ++DD+QD  +D   N  T+ T  + +   +  ++   +    L++ I+P+   I +K SD   +R +++ M ++I+LKAIAK  Y+FTE F + +  ++P+P   ++++  + +++ +VR +QI
Sbjct:  150 LQLVDDLQDTLKDTEVNHQTLFTYGWTRK--QSADVKAYKAFQLLYLFIDPDHYDIDEKGSD---LRGALLKMTHTIMLKAIAKYCYIFTEAFVEALAQFAPIPIQHLQRVNNMARMLQMVRNNQI 270          
BLAST of mRNA_M-pyrifera_M_contig95920.22109.1 vs. uniprot
Match: UPI001BA89C32 (hypothetical protein n=2 Tax=Alkaliphilus TaxID=114627 RepID=UPI001BA89C32)

HSP 1 Score: 75.1 bits (183), Expect = 5.630e-13
Identity = 44/134 (32.84%), Postives = 87/134 (64.93%), Query Frame = 1
Query:    1 DAWLVAGDLTDKQSGFAFNFGVALQILDDVQDVRRDVRDNQDTMCTLAFKQNHPEEFEILTRRLLNFLFVLINPESNGITDKESDDYAMRKSMVNMCYSIVLKAIAKDSYLFTENFAKEIEWYSPLPFSSMKKI 402
            D +LV G L++++SGF F +GV LQ++DD+QDV+ D+ +N  T+ +   K+   ++   LT +L  F+  ++N +++  + +ES    +++ + + C  ++L+AI+K+  +F++ + K+IE YS + FS  KK+
Sbjct:  274 DGYLVKGQLSEEESGFMFAYGVFLQLIDDLQDVKDDLVNNHMTIFSSLAKKLPLDK---LTNKLFWFIEEVLN-DTDTFSSEES--IKVKEVIRDSCKIMILEAISKNKNMFSKEYVKKIEKYSMVRFSYYKKL 401          
BLAST of mRNA_M-pyrifera_M_contig95920.22109.1 vs. uniprot
Match: K0AZX6_GOTA9 (Uncharacterized protein n=1 Tax=Gottschalkia acidurici (strain ATCC 7906 / DSM 604 / BCRC 14475 / CIP 104303 / KCTC 5404 / NCIMB 10678 / 9a) TaxID=1128398 RepID=K0AZX6_GOTA9)

HSP 1 Score: 72.8 bits (177), Expect = 3.600e-12
Identity = 46/158 (29.11%), Postives = 88/158 (55.70%), Query Frame = 1
Query:    1 DAWLVAGDLTDKQSGFAFNFGVALQILDDVQDVRRDVRDNQDTMCTLAFKQNHPEEFEILTRRLLNFLFVLINPESNGITDKESDDYAMRKSMVNMCYSIVLKAIAKDSYLFTENFAKEIEWYSPLPFSSMKKIVM----------IKKLMTLVRKDQ 444
            D +LV G LT ++  F F +G+ LQ++DD+QDV+ D+ +   T+ T  ++  + ++   LT +L  F+   +  E+N  +   S+   ++K +   C  ++L+AIAK+  +F++ + K+I+ YS   FS  KK+            I +++  ++KDQ
Sbjct:  262 DGYLVRGKLTYEEEEFMFIYGIVLQLIDDLQDVKEDLSNENVTIFTNEYRSCYLDK---LTNKLFRFIKQFLC-ETNMFSSNNSEK--LKKVIYESCIIMMLEAIAKNKEMFSKKYIKDIKKYSIFRFSYYKKLKNKFESSFSSNDISEVLNALKKDQ 413          
BLAST of mRNA_M-pyrifera_M_contig95920.22109.1 vs. uniprot
Match: UPI001123A56A (hypothetical protein n=2 Tax=Clostridium thermarum TaxID=1716543 RepID=UPI001123A56A)

HSP 1 Score: 70.5 bits (171), Expect = 2.410e-11
Identity = 44/149 (29.53%), Postives = 84/149 (56.38%), Query Frame = 1
Query:    1 DAWLVAGDLTDKQSGFAFNFGVALQILDDVQDVRRDVRDNQDTMCTLAFKQNHPEEFEILTRRLLNFLFVLINPESNGITDKESDDYA--MRKSMVNMCYSIVLKAIAKDSYLFTENFAKEIEWYSPLPFSSMKKI-VMIKKLMTLVRK 438
            DA+L+ G+L   +  F+F  G+ALQ+LDD+QD++ D ++   T+ T +  + + ++      RL+NF+  L++     +   E+  Y   +++++   C  +VL A +++S LF + F + I+ + P P S MKK   ++    T +RK
Sbjct:  283 DAYLIRGELNLPEIIFSFGLGIALQLLDDLQDIKADEKEGNITIFTHSMDKQYLDDN---VTRLVNFISYLVD-----LIPNENKHYIQNIKQALKRNCILMVLFAASRNSKLFRKEFVENIQQFYPYPVSYMKKFNSILNSKCTKIRK 423          
BLAST of mRNA_M-pyrifera_M_contig95920.22109.1 vs. uniprot
Match: UPI001159A894 (hypothetical protein n=1 Tax=Hathewaya massiliensis TaxID=1964382 RepID=UPI001159A894)

HSP 1 Score: 68.6 bits (166), Expect = 1.110e-10
Identity = 43/141 (30.50%), Postives = 80/141 (56.74%), Query Frame = 1
Query:    1 DAWLVAGDLTDKQSGFAFNFGVALQILDDVQDVRRDVRDNQDTMCT-LAFKQNHPEEFEILTRRLLNFLFV------LINPESNGITDKESDDYAMRKSMVNMCYSIVLKAIAKDSYLFTENFAKEIEWYSPLPFSSMKKI 402
            D +LV+G+L+ ++  F F+FGV+LQI DD+QD+R D+++N +T+ T +A++     + + L   LLNF          +N + N + ++    + ++KSM     + +  AIAK+  L++  F  + E Y P     ++K+
Sbjct:  263 DGYLVSGELSIEEIYFLFSFGVSLQIADDIQDIREDIKNNHNTLATKIAYRW----DLDNLACNLLNFTLEGLKDLEKVNKDKNEVLER----FIIKKSM-----NFIYFAIAKNKKLYSNEFIIDFEKYLPYTLKYIEKL 390          
BLAST of mRNA_M-pyrifera_M_contig95920.22109.1 vs. uniprot
Match: A0A4U9R6S6_HATHI (Uncharacterized protein n=1 Tax=Hathewaya histolytica TaxID=1498 RepID=A0A4U9R6S6_HATHI)

HSP 1 Score: 68.2 bits (165), Expect = 1.520e-10
Identity = 42/127 (33.07%), Postives = 68/127 (53.54%), Query Frame = 1
Query:    1 DAWLVAGDLTDKQSGFAFNFGVALQILDDVQDVRRDVRDNQDTMCTLAFKQNHPEEFEILTRRLLNFLFVLINPESNGITDKES--DDYAMRKSMVNMCYSIVLKAIAKDSYLFTENFAKEIEWYSP 375
            D +LV G L   +  F F+FG+ALQI+DD+QD+  D+R+N +T+ T   K  H    + LT+ LL F   ++   +    DK    +++ ++++M       V  AI K+  L++  F  E E Y P
Sbjct:  265 DGYLVKGKLNVDEIYFLFSFGIALQIVDDIQDIEEDIRENHNTVVT---KVGHRWNLDNLTKNLLGFTVDILKDLAKVNKDKNIIFENFVVKRAM-----HFVYFAITKNKKLYSSKFMNEFENYLP 383          
BLAST of mRNA_M-pyrifera_M_contig95920.22109.1 vs. uniprot
Match: A0A8B5WBD6_9LACT (Uncharacterized protein n=1 Tax=Alkalibacterium sp. TaxID=1872447 RepID=A0A8B5WBD6_9LACT)

HSP 1 Score: 67.8 bits (164), Expect = 2.050e-10
Identity = 43/136 (31.62%), Postives = 79/136 (58.09%), Query Frame = 1
Query:    1 DAWLVAGDLTDKQSGFAFNFGVALQILDDVQDVRRDVRDNQDTMCTLAFKQNHPEEFEILTRRLLNFLFVLINPESNGITDKESDDYAMRKSMVNMCYSIVLKAIAKDSYLFTENFAKEIEWYSPL---PFSSMKK 399
            DA+L+ G LTDK+  +A+N+G  LQ+LDD+QDV+ D  +   T+ ++   Q   EE     + L++ +F + +PE +G TD +     M+K + N    ++++ + K+    T +F KE+E  S +    +S+++K
Sbjct:  278 DAYLIKGKLTDKERTYAYNYGAFLQLLDDLQDVKSDRDEGNQTLFSVEQTQ---EETVREIKTLISLIFKVNSPE-DGDTDVQ---VKMKKVITNCTMLMIMETVGKNPDSVTSSFYKELETVSKVRLKAYSALEK 406          
BLAST of mRNA_M-pyrifera_M_contig95920.22109.1 vs. uniprot
Match: UPI0006E18A4E (class 1 isoprenoid biosynthesis enzyme n=1 Tax=Desnuesiella massiliensis TaxID=1650662 RepID=UPI0006E18A4E)

HSP 1 Score: 67.4 bits (163), Expect = 2.810e-10
Identity = 38/134 (28.36%), Postives = 72/134 (53.73%), Query Frame = 1
Query:    1 DAWLVAGDLTDKQSGFAFNFGVALQILDDVQDVRRDVRDNQDTMCTLAFKQNHPEEFEILTRRLLNFLFVLINPESNGITDKESDDYAMRKSMVNMCYSIVLKAIAKDSYLFTENFAKEIEWYSPLPFSSMKKI 402
            D +LV G+L+ ++  F   +G+ LQ+ DD+QDV+ D+++N  T+ +L  KQ    + + +T +L+NF+  ++  E      +  +D  M + +   C  +   ++      F+ ++ K IE Y P  FS +K I
Sbjct:  263 DGYLVKGNLSFEEIKFMLGYGIMLQLCDDLQDVKEDLKNNHMTIFSLTAKQ---WDLDNITNKLINFIDYIVYEELKDFKYEIKED--MDEFLKENCLMLAFLSMGNSKDYFSYSYIKNIEKYMPFRFSFLKSI 391          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95920.22109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8GYB3_ACACA7.800e-2132.21Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
A0A7S2EY93_9EUKA1.600e-1941.23Hypothetical protein (Fragment) n=1 Tax=Stereomyxa... [more]
L8GXJ2_ACACA2.140e-1329.37Carboxylesterase superfamily protein n=1 Tax=Acant... [more]
UPI001BA89C325.630e-1332.84hypothetical protein n=2 Tax=Alkaliphilus TaxID=11... [more]
K0AZX6_GOTA93.600e-1229.11Uncharacterized protein n=1 Tax=Gottschalkia acidu... [more]
UPI001123A56A2.410e-1129.53hypothetical protein n=2 Tax=Clostridium thermarum... [more]
UPI001159A8941.110e-1030.50hypothetical protein n=1 Tax=Hathewaya massiliensi... [more]
A0A4U9R6S6_HATHI1.520e-1033.07Uncharacterized protein n=1 Tax=Hathewaya histolyt... [more]
A0A8B5WBD6_9LACT2.050e-1031.62Uncharacterized protein n=1 Tax=Alkalibacterium sp... [more]
UPI0006E18A4E2.810e-1028.36class 1 isoprenoid biosynthesis enzyme n=1 Tax=Des... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95920contigM-pyrifera_M_contig95920:1..450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score72.8
Seed ortholog evalue1.5e-10
Seed eggNOG ortholog1128398.Curi_c23470
Hectar predicted targeting categoryother localisation
EggNOG OGs1UC9R@1239,248GH@186801,26AYZ@186813,28H5M@1,2Z7I7@2
Best tax levelunclassified Clostridiales
Best eggNOG OGNA|NA|NA
Exons1
Model size450
Cds size450
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816874.0581276-CDS-M-pyrifera_M_contig95920:0..4501622816874.0581276-CDS-M-pyrifera_M_contig95920:0..450Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95920 1..450 +
1692278229.3209908-CDS-M-pyrifera_M_contig95920:0..4501692278229.3209908-CDS-M-pyrifera_M_contig95920:0..450Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95920 1..450 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95920.22109.1prot_M-pyrifera_M_contig95920.22109.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95920 1..450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95920.22109.1

>prot_M-pyrifera_M_contig95920.22109.1 ID=prot_M-pyrifera_M_contig95920.22109.1|Name=mRNA_M-pyrifera_M_contig95920.22109.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=150bp
DAWLVAGDLTDKQSGFAFNFGVALQILDDVQDVRRDVRDNQDTMCTLAFK
QNHPEEFEILTRRLLNFLFVLINPESNGITDKESDDYAMRKSMVNMCYSI
VLKAIAKDSYLFTENFAKEIEWYSPLPFSSMKKIVMIKKLMTLVRKDQI*
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mRNA from alignment at M-pyrifera_M_contig95920:1..450+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95920.22109.1 ID=mRNA_M-pyrifera_M_contig95920.22109.1|Name=mRNA_M-pyrifera_M_contig95920.22109.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig95920:1..450+ (Macrocystis pyrifera P11B4 male)
GACGCATGGCTTGTCGCCGGAGACCTCACTGATAAGCAGAGTGGTTTTGC TTTCAACTTCGGTGTAGCTCTCCAGATCCTGGACGATGTTCAGGACGTCC GCAGAGACGTCAGAGATAACCAGGATACCATGTGCACCCTTGCATTCAAG CAAAACCACCCGGAGGAGTTTGAAATCCTCACAAGAAGGCTGCTGAACTT CCTCTTCGTTTTGATCAACCCTGAGTCGAACGGCATCACTGACAAGGAGA GCGATGACTATGCCATGAGGAAGAGCATGGTCAACATGTGCTACTCGATC GTCCTCAAGGCGATTGCGAAGGACAGCTACCTTTTCACAGAGAACTTTGC CAAGGAGATTGAGTGGTACTCTCCCTTGCCCTTCTCGAGCATGAAGAAGA TTGTGATGATCAAGAAGCTCATGACCCTCGTGAGAAAGGACCAAATCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95920:1..450+

>mRNA_M-pyrifera_M_contig95920.22109.1 ID=mRNA_M-pyrifera_M_contig95920.22109.1|Name=mRNA_M-pyrifera_M_contig95920.22109.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig95920:1..450+ (Macrocystis pyrifera P11B4 male)
GACGCATGGCTTGTCGCCGGAGACCTCACTGATAAGCAGAGTGGTTTTGC
TTTCAACTTCGGTGTAGCTCTCCAGATCCTGGACGATGTTCAGGACGTCC
GCAGAGACGTCAGAGATAACCAGGATACCATGTGCACCCTTGCATTCAAG
CAAAACCACCCGGAGGAGTTTGAAATCCTCACAAGAAGGCTGCTGAACTT
CCTCTTCGTTTTGATCAACCCTGAGTCGAACGGCATCACTGACAAGGAGA
GCGATGACTATGCCATGAGGAAGAGCATGGTCAACATGTGCTACTCGATC
GTCCTCAAGGCGATTGCGAAGGACAGCTACCTTTTCACAGAGAACTTTGC
CAAGGAGATTGAGTGGTACTCTCCCTTGCCCTTCTCGAGCATGAAGAAGA
TTGTGATGATCAAGAAGCTCATGACCCTCGTGAGAAAGGACCAAATCTAA
GACGCATGGCTTGTCGCCGGAGACCTCACTGATAAGCAGAGTGGTTTTGC
TTTCAACTTCGGTGTAGCTCTCCAGATCCTGGACGATGTTCAGGACGTCC
GCAGAGACGTCAGAGATAACCAGGATACCATGTGCACCCTTGCATTCAAG
CAAAACCACCCGGAGGAGTTTGAAATCCTCACAAGAAGGCTGCTGAACTT
CCTCTTCGTTTTGATCAACCCTGAGTCGAACGGCATCACTGACAAGGAGA
GCGATGACTATGCCATGAGGAAGAGCATGGTCAACATGTGCTACTCGATC
GTCCTCAAGGCGATTGCGAAGGACAGCTACCTTTTCACAGAGAACTTTGC
CAAGGAGATTGAGTGGTACTCTCCCTTGCCCTTCTCGAGCATGAAGAAGA
TTGTGATGATCAAGAAGCTCATGACCCTCGTGAGAAAGGACCAAATCTAA
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