mRNA_M-pyrifera_M_contig95908.22106.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95908.22106.1
Unique NamemRNA_M-pyrifera_M_contig95908.22106.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig95908.22106.1 vs. uniprot
Match: A0A7Y2GRK8_9ACTN (DUF3048 domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GRK8_9ACTN)

HSP 1 Score: 184 bits (467), Expect = 1.090e-53
Identity = 100/159 (62.89%), Postives = 120/159 (75.47%), Query Frame = 1
Query:   10 YQGVLGTLGPDDFVGPAAPAPAPVAAPNTAPLTGMWLESVPQRAAVVVKVDNSSKARPQVGLNAADIVIEEEVEGGITRLAAIYHSNTTTVGPVRSGRTTDISFLTALGSPSLVYSGANDIFDELLLRQPTVANYSAARNGGYWRDKSRSAPSNLFANT 486
            Y+GVLGT   D     ++P   P  A  T PLTG+   + P R A+VVKVDN+S+ARPQ GLN ADIVIEEEVE GITR AA+YH++ +TVGPVRSGR+TDISFL ALGSP LVYSGAN + D+LLL Q  VAN+SAAR+ GYWR  SR AP+NL++ T
Sbjct:  114 YKGVLGTYTLDQVFA-SSPVANPTVASGTLPLTGVP-GTTPSRPAIVVKVDNASRARPQSGLNKADIVIEEEVEFGITRFAAVYHTHDSTVGPVRSGRSTDISFLNALGSPGLVYSGANRVIDQLLLNQTNVANFSAARSSGYWRSSSRPAPNNLYSKT 270          
BLAST of mRNA_M-pyrifera_M_contig95908.22106.1 vs. uniprot
Match: A0A7Y2IHY4_9ACTN (DUF3048 domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IHY4_9ACTN)

HSP 1 Score: 179 bits (455), Expect = 7.730e-52
Identity = 99/159 (62.26%), Postives = 112/159 (70.44%), Query Frame = 1
Query:   10 YQGVLGTLGPDDFVGPAAPAPAPVAAPNTAPLTGMWLESVPQRAAVVVKVDNSSKARPQVGLNAADIVIEEEVEGGITRLAAIYHSNTTTVGPVRSGRTTDISFLTALGSPSLVYSGANDIFDELLLRQPTVANYSAARNGGYWRDKSRSAPSNLFANT 486
            Y+GVLGT   D     +A  P+P  A  T PLTG    +   R AVVVKVDNSSKARPQ GLN ADIV EEEVE GITR AA++HS   TVGPVRSGR+TDISFL A G P+L YSGAN + D LLL Q  ++NYSAAR+ GYWR  SR APSNL+  T
Sbjct:  121 YKGVLGTYSLDQVFASSA-VPSPATAAGTFPLTG-GAGTAANRPAVVVKVDNSSKARPQSGLNQADIVFEEEVEYGITRFAAVFHSKDATVGPVRSGRSTDISFLNAFGQPALAYSGANKVIDRLLLNQVNISNYSAARSSGYWRSSSRRAPSNLYTKT 277          
BLAST of mRNA_M-pyrifera_M_contig95908.22106.1 vs. uniprot
Match: A0A7X5WPT8_9ACTN (DUF3048 domain-containing protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WPT8_9ACTN)

HSP 1 Score: 125 bits (315), Expect = 1.030e-31
Identity = 78/153 (50.98%), Postives = 102/153 (66.67%), Query Frame = 1
Query:    7 AYQGVLGTLGPD-DFVGPAAPAPAPVAAPNTAPLTGMWLE--SVPQRAAVVVKVDNSSKARPQVGLNAADIVIEEEVEGGITRLAAIYHSNTTTVGPVRSGRTTDISFLTALGSPSLVYSGANDIFDELLLRQPTVANYSAARNGGYWRDKSR 456
            AY+GVLG + PD + V P A  PAP AAP  APLTG+ L+  +V  R A++VK+DN++K RPQ  L  AD+V EE +EGG TRLAA+YH+++  +GPVRSGRTTDI+ L +L  P   +SGAN +   LL RQ  V +  AA    Y+R   R
Sbjct:   91 AYRGVLGQIDPDRNVVAPVALPPAP-AAPGIAPLTGLPLDDPAVAGRPALLVKIDNTAKGRPQEALARADLVYEELIEGGFTRLAAVYHTHSPLLGPVRSGRTTDIALLGSLNEPIFAWSGANRVHAALLRRQDFV-DLGAATIRNYFRADDR 241          
BLAST of mRNA_M-pyrifera_M_contig95908.22106.1 vs. uniprot
Match: A0A2E8LAY8_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8LAY8_9ACTN)

HSP 1 Score: 117 bits (293), Expect = 3.700e-28
Identity = 73/153 (47.71%), Postives = 97/153 (63.40%), Query Frame = 1
Query:    7 AYQGVLGTLGPDDFVGPAAPAPAPVAAPNTAPLTGMWL--ESVPQRAAVVVKVDNSSKARPQVGLNAADIVIEEEVEGGITRLAAIYHSNTTT-VGPVRSGRTTDISFLTALGSPSLVYSGANDIFDELLLRQPTVANYSAARNGGYWRDKSR 456
            +Y+G+LG L  D  V  AA  P P  AP TAPLTG+ L   S+ +R A+VVK+DN++ ARP  GLN AD+V   +VEGG TRLAA++HS T   +GPVRS RTTDIS  ++L  P   +SGAN     +L+R+  + +  AA    Y+R   R
Sbjct:  103 SYRGILGQLDADRAVVQAAALP-PEQAPGTAPLTGLPLGDSSIAERPAMVVKIDNTAAARPHAGLNDADLVYVTQVEGGFTRLAAVFHSQTPPEIGPVRSARTTDISVFSSLNGPIFAWSGANP-GHRVLIRRYEMVDLGAATRSEYYRAADR 253          
BLAST of mRNA_M-pyrifera_M_contig95908.22106.1 vs. uniprot
Match: A0A3M2GP56_ACTSX (DUF3048 domain-containing protein n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GP56_ACTSX)

HSP 1 Score: 118 bits (295), Expect = 4.300e-28
Identity = 68/133 (51.13%), Postives = 81/133 (60.90%), Query Frame = 1
Query:   91 NTAPLTGMWLESVPQRAAVVVKVDNSSKARPQVGLNAADIVIEEEVEGGITRLAAIYHSN-TTTVGPVRSGRTTDISFLTALGSPSLVYSGANDIFDELLLRQPTVANYSAARNGGYWRDKSRSAPSNLFANT 486
            N A LTG+     P R A+ VK+DN   A PQ G+NAAD+V EEEVEGG+TRLAA++HS     VGPVRS RTTD + L  L  P    SG N     LL     V   +A+   GY+RD+SR AP NLF NT
Sbjct:  222 NRALLTGLLTYDDPSRPALAVKIDNVDAAHPQAGINAADVVFEEEVEGGLTRLAAVFHSTGAEVVGPVRSMRTTDFTLLAQLNHPLFANSGGNPRARRLLEDSDLVDVGAASLPAGYYRDRSRRAPHNLFTNT 354          
BLAST of mRNA_M-pyrifera_M_contig95908.22106.1 vs. uniprot
Match: A0A7W1E2L0_9ACTN (DUF3048 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W1E2L0_9ACTN)

HSP 1 Score: 115 bits (288), Expect = 6.150e-28
Identity = 68/136 (50.00%), Postives = 86/136 (63.24%), Query Frame = 1
Query:   85 APNTAPLTGMWLESVP-QRAAVVVKVDNSSKARPQVGLNAADIVIEEEVEGGITRLAAIYHS-NTTTVGPVRSGRTTDISFLTALGSPSLVYSGANDIFDELLLRQPTVANYSAARNGGYWRDKSRSAPSNLFANT 486
            A   APLTG+  +     R A++VK+DN+ KARPQ GLN AD+V+EE VEGGITR A I+HS ++  VGPVRS RT+DI+  +AL  P   YSG N  F++LL + P V        GGY R   R AP N F+ T
Sbjct:   47 AAGVAPLTGLPGDPAKLNRPALLVKIDNAPKARPQAGLNQADVVVEEGVEGGITRFATIFHSGDSDPVGPVRSARTSDIAIASALNHPLFAYSGTNADFEKLLDKAPLVNVGPGRFPGGYHRQSGRPAPYNYFSAT 182          
BLAST of mRNA_M-pyrifera_M_contig95908.22106.1 vs. uniprot
Match: A0A2D6UB98_9ACTN (Uncharacterized protein n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6UB98_9ACTN)

HSP 1 Score: 115 bits (287), Expect = 2.670e-27
Identity = 73/152 (48.03%), Postives = 94/152 (61.84%), Query Frame = 1
Query:   10 YQGVLGTLGPDDFVGPAAPAPAPVAAPNTAPLTGMWL--ESVPQRAAVVVKVDNSSKARPQVGLNAADIVIEEEVEGGITRLAAIYHSNTTT-VGPVRSGRTTDISFLTALGSPSLVYSGANDIFDELLLRQPTVANYSAARNGGYWRDKSR 456
            Y G+L  L  D  V  AA  P P   P TAPLTG+ L   S+ +R A+VVK+DN++ ARP  GLN AD+V   +VEGG TRLAA++HS T   +GPVRS RTTDIS  T+L  P  V+SGAN     +L+R+  + +  AA    Y+R   R
Sbjct:  104 YSGILAQLDADRAVVQAAALP-PEQDPGTAPLTGLPLAESSIAERPAMVVKIDNTAAARPHAGLNDADLVYVTQVEGGFTRLAAVFHSQTPPEIGPVRSARTTDISVFTSLNEPVFVWSGANP-GHRVLIRRYDMVDLGAATRSEYYRAADR 253          
BLAST of mRNA_M-pyrifera_M_contig95908.22106.1 vs. uniprot
Match: A0A7V9NPZ7_9ACTN (DUF3048 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9NPZ7_9ACTN)

HSP 1 Score: 113 bits (283), Expect = 2.890e-27
Identity = 67/136 (49.26%), Postives = 86/136 (63.24%), Query Frame = 1
Query:   85 APNTAPLTGMWLESVPQ-RAAVVVKVDNSSKARPQVGLNAADIVIEEEVEGGITRLAAIYHS-NTTTVGPVRSGRTTDISFLTALGSPSLVYSGANDIFDELLLRQPTVANYSAARNGGYWRDKSRSAPSNLFANT 486
            A + +PLTG+  ++  + R A++VK+DN+ K RPQ GL AADIV+EE VEGGITRLAAI+ S +   VGPVRS R++D+     L  P   YSG N  F  L+ R P V          Y RDK RSAP NLF++T
Sbjct:   42 ASDVSPLTGLPQDAATKGRPALIVKIDNAPKGRPQYGLGAADIVVEEGVEGGITRLAAIFQSKDAALVGPVRSARSSDLHIAVPLDHPLFAYSGTNSNFQALIDRAPLVNVGINKLGSAYHRDKRRSAPYNLFSST 177          
BLAST of mRNA_M-pyrifera_M_contig95908.22106.1 vs. uniprot
Match: A0A6G0ABW5_9ACTN (DUF3048 domain-containing protein n=2 Tax=Bacteria TaxID=2 RepID=A0A6G0ABW5_9ACTN)

HSP 1 Score: 112 bits (280), Expect = 5.530e-26
Identity = 65/130 (50.00%), Postives = 75/130 (57.69%), Query Frame = 1
Query:  100 PLTGMWLESVPQRAAVVVKVDNSSKARPQVGLNAADIVIEEEVEGGITRLAAIYHSNTT-TVGPVRSGRTTDISFLTALGSPSLVYSGANDIFDELLLRQPTVANYSAARNGGYWRDKSRSAPSNLFANT 486
            PLTG+    VP R A+  K+DN  +ARPQ GLN ADIV EE VEGGITR  A+YHS    TVGPVRSGRT+D   +  L  P    SG N      L  QP +      R   YWRD  R+AP NL+  T
Sbjct:  229 PLTGVPASEVPARPAIAAKIDNYERARPQSGLNQADIVYEEIVEGGITRFVALYHSREAPTVGPVRSGRTSDFDLVLNLNWPLFASSGGNRNVLSQLADQPILDVTENTRPQLYWRDDQRTAPHNLYTTT 358          
BLAST of mRNA_M-pyrifera_M_contig95908.22106.1 vs. uniprot
Match: UPI0018F23ED1 (DUF3048 domain-containing protein n=1 Tax=Qaidamihabitans albus TaxID=2795733 RepID=UPI0018F23ED1)

HSP 1 Score: 107 bits (267), Expect = 4.930e-25
Identity = 61/117 (52.14%), Postives = 72/117 (61.54%), Query Frame = 1
Query:  130 PQRAAVVVKVDNSSKARPQVGLNAADIVIEEEVEGGITRLAAIYHSNTTTV-GPVRSGRTTDISFLTALGSPSLVYSGANDIFDELLLRQPTVANYSAARNGGYWRDKSRSAPSNLF 477
            PQR  +V+K+DN   ARPQ GL AA++V  E VEGG+TRLAA+Y +N   V GPVRS R TDI  L   G P+L YSGA      LL   P V    AA  G Y+R+ SR  P NLF
Sbjct:   55 PQRRLLVIKIDNVEPARPQTGLGAAEVVYVEPVEGGLTRLAAVYSANLPDVAGPVRSARQTDIQLLAQYGRPTLAYSGAAPEIRPLLRSAPLVIAPEAAAPGAYFRNSSRPRPHNLF 171          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95908.22106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y2GRK8_9ACTN1.090e-5362.89DUF3048 domain-containing protein n=1 Tax=Acidimic... [more]
A0A7Y2IHY4_9ACTN7.730e-5262.26DUF3048 domain-containing protein n=1 Tax=Acidimic... [more]
A0A7X5WPT8_9ACTN1.030e-3150.98DUF3048 domain-containing protein (Fragment) n=1 T... [more]
A0A2E8LAY8_9ACTN3.700e-2847.71Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A3M2GP56_ACTSX4.300e-2851.13DUF3048 domain-containing protein n=1 Tax=Actinomy... [more]
A0A7W1E2L0_9ACTN6.150e-2850.00DUF3048 domain-containing protein n=1 Tax=Actinomy... [more]
A0A2D6UB98_9ACTN2.670e-2748.03Uncharacterized protein n=5 Tax=Acidimicrobiaceae ... [more]
A0A7V9NPZ7_9ACTN2.890e-2749.26DUF3048 domain-containing protein n=1 Tax=Actinomy... [more]
A0A6G0ABW5_9ACTN5.530e-2650.00DUF3048 domain-containing protein n=2 Tax=Bacteria... [more]
UPI0018F23ED14.930e-2552.14DUF3048 domain-containing protein n=1 Tax=Qaidamih... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95908contigM-pyrifera_M_contig95908:240..725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score103.6
Seed ortholog evalue8.8e-20
Seed eggNOG ortholog1896.JOAU01000012_gene936
Preferred nameyerB
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF3048) C-terminal domain
EggNOG OGs2GP8D@201174,COG1470@1,COG1470@2
COG Functional cat.S
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size486
Cds size486
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816873.9022324-CDS-M-pyrifera_M_contig95908:239..7251622816873.9022324-CDS-M-pyrifera_M_contig95908:239..725Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95908 240..725 +
1692278229.2530572-CDS-M-pyrifera_M_contig95908:239..7251692278229.2530572-CDS-M-pyrifera_M_contig95908:239..725Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95908 240..725 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95908.22106.1prot_M-pyrifera_M_contig95908.22106.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95908 240..725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95908.22106.1

>prot_M-pyrifera_M_contig95908.22106.1 ID=prot_M-pyrifera_M_contig95908.22106.1|Name=mRNA_M-pyrifera_M_contig95908.22106.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=162bp
MLAYQGVLGTLGPDDFVGPAAPAPAPVAAPNTAPLTGMWLESVPQRAAVV
VKVDNSSKARPQVGLNAADIVIEEEVEGGITRLAAIYHSNTTTVGPVRSG
RTTDISFLTALGSPSLVYSGANDIFDELLLRQPTVANYSAARNGGYWRDK
SRSAPSNLFANT
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mRNA from alignment at M-pyrifera_M_contig95908:240..725+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95908.22106.1 ID=mRNA_M-pyrifera_M_contig95908.22106.1|Name=mRNA_M-pyrifera_M_contig95908.22106.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig95908:240..725+ (Macrocystis pyrifera P11B4 male)
ATGCTGGCCTATCAGGGTGTCCTCGGAACCCTCGGGCCCGACGACTTCGT CGGCCCGGCCGCTCCTGCCCCGGCACCGGTTGCCGCTCCCAACACCGCCC CGCTCACCGGGATGTGGCTCGAGTCGGTCCCCCAGCGTGCGGCCGTCGTC GTGAAGGTCGACAACTCCTCGAAGGCACGACCCCAGGTCGGATTGAATGC CGCCGACATCGTGATCGAAGAAGAGGTCGAGGGCGGCATCACTCGCCTCG CCGCGATCTACCACTCGAACACGACCACCGTCGGTCCGGTCCGCAGCGGT CGAACGACCGACATCTCGTTCCTGACCGCCCTGGGTTCGCCCTCGCTGGT CTACTCCGGAGCAAACGACATCTTCGACGAGCTCCTGCTTCGGCAGCCGA CGGTGGCGAACTACAGCGCCGCCCGCAACGGTGGTTACTGGCGAGACAAG TCACGCAGCGCGCCGAGCAATCTCTTCGCCAACACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95908:240..725+

>mRNA_M-pyrifera_M_contig95908.22106.1 ID=mRNA_M-pyrifera_M_contig95908.22106.1|Name=mRNA_M-pyrifera_M_contig95908.22106.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=972bp|location=Sequence derived from alignment at M-pyrifera_M_contig95908:240..725+ (Macrocystis pyrifera P11B4 male)
ATGCTGGCCTATCAGGGTGTCCTCGGAACCCTCGGGCCCGACGACTTCGT
CGGCCCGGCCGCTCCTGCCCCGGCACCGGTTGCCGCTCCCAACACCGCCC
CGCTCACCGGGATGTGGCTCGAGTCGGTCCCCCAGCGTGCGGCCGTCGTC
GTGAAGGTCGACAACTCCTCGAAGGCACGACCCCAGGTCGGATTGAATGC
CGCCGACATCGTGATCGAAGAAGAGGTCGAGGGCGGCATCACTCGCCTCG
CCGCGATCTACCACTCGAACACGACCACCGTCGGTCCGGTCCGCAGCGGT
CGAACGACCGACATCTCGTTCCTGACCGCCCTGGGTTCGCCCTCGCTGGT
CTACTCCGGAGCAAACGACATCTTCGACGAGCTCCTGCTTCGGCAGCCGA
CGGTGGCGAACTACAGCGCCGCCCGCAACGGTGGTTACTGGCGAGACAAG
TCACGCAGCGCGCCGAGCAATCTCTTCGCCAACACCATGCTGGCCTATCA
GGGTGTCCTCGGAACCCTCGGGCCCGACGACTTCGTCGGCCCGGCCGCTC
CTGCCCCGGCACCGGTTGCCGCTCCCAACACCGCCCCGCTCACCGGGATG
TGGCTCGAGTCGGTCCCCCAGCGTGCGGCCGTCGTCGTGAAGGTCGACAA
CTCCTCGAAGGCACGACCCCAGGTCGGATTGAATGCCGCCGACATCGTGA
TCGAAGAAGAGGTCGAGGGCGGCATCACTCGCCTCGCCGCGATCTACCAC
TCGAACACGACCACCGTCGGTCCGGTCCGCAGCGGTCGAACGACCGACAT
CTCGTTCCTGACCGCCCTGGGTTCGCCCTCGCTGGTCTACTCCGGAGCAA
ACGACATCTTCGACGAGCTCCTGCTTCGGCAGCCGACGGTGGCGAACTAC
AGCGCCGCCCGCAACGGTGGTTACTGGCGAGACAAGTCACGCAGCGCGCC
GAGCAATCTCTTCGCCAACACC
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