mRNA_M-pyrifera_M_contig95837.22095.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95837.22095.1
Unique NamemRNA_M-pyrifera_M_contig95837.22095.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig95837.22095.1 vs. uniprot
Match: A0A2E2ZRB7_SPHSX (Uncharacterized protein n=1 Tax=Sphingomonas sp. TaxID=28214 RepID=A0A2E2ZRB7_SPHSX)

HSP 1 Score: 164 bits (414), Expect = 1.280e-48
Identity = 84/164 (51.22%), Postives = 116/164 (70.73%), Query Frame = 1
Query:    1 AATLVICSTLAVGSTASAQLSPYAQGPQFQTMVRGIPSTCRSHDNMQ-VAFYSDISLNNIGIATRINGNPIIIMNPNISNQFSDLVTVWWVAHECAHHALYPQYNNETRADCLAIKQLVQYGLLSNASQLNAFSIELQNLPGNSTTGHLPGPMRARAIAQCALS 489
            AA   +C+T      ++ QLS YA GPQ+Q  VRG+P  CR++ N Q VA +SD +L+++GIA+R  G P I++NP++  ++SDLV V+W AHECAHHAL P  N+E+ ADC AI+++   G++    QL AFS EL+NLPG +  GHLPGP+RA+ IA CALS
Sbjct:   13 AALAALCATAWAPPASAQQLSRYAIGPQYQVSVRGVPMNCRAYGNGQYVAIFSDPALDDVGIASRYVGQPYIVLNPDVMARYSDLVAVFWFAHECAHHALGPM-NSESNADCFAIRRMRDLGIIRRREQLLAFSQELRNLPGTAM-GHLPGPLRAQHIAACALS 174          
BLAST of mRNA_M-pyrifera_M_contig95837.22095.1 vs. uniprot
Match: A0A7Z0HCX2_9GAMM (Uncharacterized protein n=1 Tax=Psychrobacter sp. BI730 TaxID=2705463 RepID=A0A7Z0HCX2_9GAMM)

HSP 1 Score: 162 bits (410), Expect = 3.460e-48
Identity = 82/163 (50.31%), Postives = 106/163 (65.03%), Query Frame = 1
Query:    1 AATLVICSTLAVGSTASAQLSPYAQGPQFQTMVRGIPSTCRSHDNMQVAFYSDISLNNIGIATRINGNPIIIMNPNISNQFSDLVTVWWVAHECAHHALYPQYNNETRADCLAIKQLVQYGLLSNASQLNAFSIELQNLPGNSTTGHLPGPMRARAIAQCALS 489
            A T ++CS + V  T         QGP +Q  VRG+P  C ++    VA + +  LNNIG+A   NG P+I++NP +++Q+S++V  WW AHECAHHAL PQ NNET ADC A++QLVQ G++    QL AFS EL  LPG S  GHLPGP RA+ I  CALS
Sbjct:    9 AVTALLCSQVTVAQT---------QGPMYQINVRGLPMNCTAYSGQPVAIFLNSQLNNIGMANYHNGAPVIMLNPRVASQYSNMVAQWWFAHECAHHALPPQLNNETSADCYAVQQLVQKGVIRRREQLIAFSRELWALPG-SPMGHLPGPYRAQNIINCALS 161          
BLAST of mRNA_M-pyrifera_M_contig95837.22095.1 vs. uniprot
Match: UPI0011AB7140 (hypothetical protein n=1 Tax=Sphingosinithalassobacter portus TaxID=2676234 RepID=UPI0011AB7140)

HSP 1 Score: 159 bits (403), Expect = 5.950e-47
Identity = 79/146 (54.11%), Postives = 104/146 (71.23%), Query Frame = 1
Query:   55 QLSPYAQGPQFQTMVRGIPSTCRSHDNMQ-VAFYSDISLNNIGIATRINGNPIIIMNPNISNQFSDLVTVWWVAHECAHHALYPQYNNETRADCLAIKQLVQYGLLSNASQLNAFSIELQNLPGNSTTGHLPGPMRARAIAQCALS 489
            QLS YA GPQ+Q  VRG+P  CR++   Q VA +SD  L+++GIA+     P I++NPN+  ++SDLV VWW AHECAHHAL P  N+E+ ADC AI+++   G++    QL AFS EL+NLPG +  GHLPGP+RA+ IA CALS
Sbjct:   31 QLSRYAMGPQYQVSVRGLPMNCRAYRTGQYVAIFSDPMLDDVGIASSYGNQPYIVLNPNVMARYSDLVAVWWFAHECAHHALGPM-NSESNADCFAIRRMRDLGIIRRREQLIAFSQELRNLPGTAM-GHLPGPLRAQHIAACALS 174          
BLAST of mRNA_M-pyrifera_M_contig95837.22095.1 vs. uniprot
Match: A0A7W9A1C7_9CAUL (Uncharacterized protein n=1 Tax=Brevundimonas halotolerans TaxID=69670 RepID=A0A7W9A1C7_9CAUL)

HSP 1 Score: 138 bits (348), Expect = 1.090e-38
Identity = 67/139 (48.20%), Postives = 89/139 (64.03%), Query Frame = 1
Query:   76 GPQFQTMVRGIPSTCRSHDNMQVAFYSDISLNNIGIATRI-NGNPIIIMNPNISNQFSDLVTVWWVAHECAHHALYPQYNNETRADCLAIKQLVQYGLLSNASQLNAFSIELQNLPGNSTTGHLPGPMRARAIAQCALS 489
            G  +Q  + G+P +C S+    V  Y    LNN+GIATR+ NG PII+MNP++  +F  LV VWW AHEC HHAL P YN+ET ADC  ++ L   G + N   L AF+ +L +LPG S  GHLPGP RA+ +  C+L+
Sbjct:   33 GGMWQVYIAGVPLSCASYYGEPVRIYMTRDLNNVGIATRVQNGQPIIVMNPDVLARFQPLVQVWWFAHECGHHALGP-YNSETNADCWGVRVLRDQGFIRNVYDLQAFAYDLSSLPG-SAVGHLPGPQRAQNVINCSLT 169          
BLAST of mRNA_M-pyrifera_M_contig95837.22095.1 vs. uniprot
Match: UPI000F6573FC (hypothetical protein n=1 Tax=Brevundimonas fluminis TaxID=2487274 RepID=UPI000F6573FC)

HSP 1 Score: 137 bits (344), Expect = 3.910e-38
Identity = 71/139 (51.08%), Postives = 89/139 (64.03%), Query Frame = 1
Query:   76 GPQFQTMVRGIPSTCRSHDNMQVAFYSDISLNNIGIATRIN-GNPIIIMNPNISNQFSDLVTVWWVAHECAHHALYPQYNNETRADCLAIKQLVQYGLLSNASQLNAFSIELQNLPGNSTTGHLPGPMRARAIAQCALS 489
            G  +Q  V G+P +C  H    V  Y    LNN+GIA R   G PI+++NP++  +FS  V VWW AHEC HHAL P YN+ET ADC  +K + Q GLL +  QL+ F+ EL +LPG S  GHLPGP RAR IA CAL+
Sbjct:   29 GGMWQVNVAGVPLSCVDHYGTPVRIYVTNGLNNVGIAARTQQGQPIVVLNPDVFARFSPTVQVWWFAHECGHHALGP-YNSETNADCWGVKVMRQQGLLHSYWQLDQFARELASLPG-SPVGHLPGPARARNIANCALT 165          
BLAST of mRNA_M-pyrifera_M_contig95837.22095.1 vs. uniprot
Match: UPI001BD912AD (hypothetical protein n=1 Tax=Curvibacter sp. CHRR-16 TaxID=2835872 RepID=UPI001BD912AD)

HSP 1 Score: 121 bits (304), Expect = 2.730e-32
Identity = 57/125 (45.60%), Postives = 76/125 (60.80%), Query Frame = 1
Query:  109 PSTCRSHDNMQVAFYSDISLNNIGIA-TRINGNPIIIMNPNISNQFSDLVTVWWVAHECAHHALYPQYNNETRADCLAIKQLVQYGLLSNASQLNAFSIELQNLPGNSTTGHLPGPMRARAIAQC 480
            P  C S   + V +  D +LNN+G+A T  NG PII++NPN+     + V  +W AHECAHHAL+P  N+E  ADC AIK +   G++SN  Q+      +  LPGN  TGHLPGP RA+ +  C
Sbjct:   21 PLPCSSFSGIPVPYIPDPTLNNVGVAHTMQNGQPIIVINPNVVGPLPEYVRQFWYAHECAHHALHPMQNSEVNADCYAIKAIRNIGIISNPQQIGVLLNYISTLPGNIMTGHLPGPARAQNLYAC 145          
BLAST of mRNA_M-pyrifera_M_contig95837.22095.1 vs. uniprot
Match: UPI0003809D6B (hypothetical protein n=3 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI0003809D6B)

HSP 1 Score: 112 bits (279), Expect = 1.620e-28
Identity = 56/125 (44.80%), Postives = 77/125 (61.60%), Query Frame = 1
Query:  109 PSTCRSHDNMQVAFYSDISLNNIGIAT-RINGNPIIIMNPNISNQFSDLVTVWWVAHECAHHALYPQYNNETRADCLAIKQLVQYGLLSNASQLNAFSIELQNLPGNSTTGHLPGPMRARAIAQC 480
            P  C +++ + V + ++  LNN+G+A   +NG PII +NPN+ NQ    V  +W AHECAHHAL+PQ N+E  ADC AIK +   G++ N  Q+      +  LPG S  GHLPGP RA+ I  C
Sbjct:   23 PLPCTAYNGVPVQYIANPQLNNVGMANVMMNGQPIIQLNPNVINQLPYQVRQFWYAHECAHHALFPQQNSEVNADCWAIKTIRNLGIIQNQQQITQLLNYIFTLPG-SMQGHLPGPARAQNIYWC 146          
BLAST of mRNA_M-pyrifera_M_contig95837.22095.1 vs. uniprot
Match: A0A0F6RBG8_9GAMM (Uncharacterized protein n=1 Tax=Kangiella geojedonensis TaxID=914150 RepID=A0A0F6RBG8_9GAMM)

HSP 1 Score: 107 bits (266), Expect = 1.560e-26
Identity = 53/126 (42.06%), Postives = 77/126 (61.11%), Query Frame = 1
Query:  109 PSTCRSHDNMQVAFYSDISLNNIGIA--TRINGNPIIIMNPNISNQFSDLVTVWWVAHECAHHALYPQYNNETRADCLAIKQLVQYGLLSNASQLNAFSIELQNLPGNSTTGHLPGPMRARAIAQC 480
            P  C++ +   V +Y++ +L+N+G+A  TR NG  II +NPN+     + V  +W AHECAHHAL+P  N+E  ADC AIK L   G++   +Q++     +  LPG+  TGHLPGP RA  +  C
Sbjct:   23 PLPCKAFNGQPVPYYANPNLSNVGVAHMTR-NGQRIIQINPNVVGPLPEYVRQFWYAHECAHHALHPAQNSEVAADCYAIKNLRNIGVIRFRNQVSGLLNYISTLPGSVQTGHLPGPARANNLYAC 147          
BLAST of mRNA_M-pyrifera_M_contig95837.22095.1 vs. uniprot
Match: UPI001C909991 (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001C909991)

HSP 1 Score: 97.8 bits (242), Expect = 1.500e-23
Identity = 47/96 (48.96%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  193 INGNPIIIMNPNISNQFSDLVTVWWVAHECAHHALYPQYNNETRADCLAIKQLVQYGLLSNASQLNAFSIELQNLPGNSTTGHLPGPMRARAIAQC 480
            ++G PII +NPN+ NQ    V  +W AHECAHHAL+PQ N+E  ADC AIK +   G++ N  Q+      +  LPG S  GHLPGP RA+ I  C
Sbjct:    2 MDGQPIIQLNPNVINQLPYQVRQFWYAHECAHHALFPQQNSEVNADCWAIKTIRNLGIIQNQQQITQLLNYISTLPG-SMQGHLPGPARAQNIYWC 96          
BLAST of mRNA_M-pyrifera_M_contig95837.22095.1 vs. uniprot
Match: UPI001FBADCDE (hypothetical protein n=1 Tax=Acinetobacter sp. NyZ410 TaxID=2929509 RepID=UPI001FBADCDE)

HSP 1 Score: 98.6 bits (244), Expect = 4.330e-23
Identity = 63/148 (42.57%), Postives = 84/148 (56.76%), Query Frame = 1
Query:   43 TASAQLSPYAQGPQFQTMVRGIPSTCRSHDNMQVAFYSDISLNNIGIATRINGNPIIIMNPNISNQFSDLVTVWWVAHECAHHALY--PQYNNETRADCLAIKQLVQYGLLSNASQLNAFSIELQNLPGNSTTGHLPGPMRARAIAQC 480
            T SA+ +PY     +   + G P TC  ++   V  Y + +L ++G+A   N  P I++NPN+ N FS L+ V+W+AHEC H   +  P  N E  ADC AIKQL    L  N SQLN  + E   L G S +GHL GP RA+ IAQC
Sbjct:   21 TTSARSNPY-----YSLNLLGQPWTCSLNNGQLVPIYLNPNLPDVGMAK--NYPPQIVLNPNVMNNFSPLMQVFWLAHECVHATNFQPPGMNPEIDADCKAIKQLKNLNL--NPSQLNQIAYETLPLTG-SHSGHLAGPYRAQLIAQC 158          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95837.22095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A2E2ZRB7_SPHSX1.280e-4851.22Uncharacterized protein n=1 Tax=Sphingomonas sp. T... [more]
A0A7Z0HCX2_9GAMM3.460e-4850.31Uncharacterized protein n=1 Tax=Psychrobacter sp. ... [more]
UPI0011AB71405.950e-4754.11hypothetical protein n=1 Tax=Sphingosinithalassoba... [more]
A0A7W9A1C7_9CAUL1.090e-3848.20Uncharacterized protein n=1 Tax=Brevundimonas halo... [more]
UPI000F6573FC3.910e-3851.08hypothetical protein n=1 Tax=Brevundimonas flumini... [more]
UPI001BD912AD2.730e-3245.60hypothetical protein n=1 Tax=Curvibacter sp. CHRR-... [more]
UPI0003809D6B1.620e-2844.80hypothetical protein n=3 Tax=Vibrio parahaemolytic... [more]
A0A0F6RBG8_9GAMM1.560e-2642.06Uncharacterized protein n=1 Tax=Kangiella geojedon... [more]
UPI001C9099911.500e-2348.96hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
UPI001FBADCDE4.330e-2342.57hypothetical protein n=1 Tax=Acinetobacter sp. NyZ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95837contigM-pyrifera_M_contig95837:5..496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score105.1
Seed ortholog evalue3.1e-20
Seed eggNOG ortholog1217652.F954_02906
Hectar predicted targeting categorysignal peptide
EggNOG OGs1QQ2T@1224,1TNW0@1236,2BY82@1,3033K@2,3NRFC@468
Best tax levelMoraxellaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size492
Cds size492
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816873.2439215-CDS-M-pyrifera_M_contig95837:4..4961622816873.2439215-CDS-M-pyrifera_M_contig95837:4..496Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95837 5..496 +
1692278228.8271565-CDS-M-pyrifera_M_contig95837:4..4961692278228.8271565-CDS-M-pyrifera_M_contig95837:4..496Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95837 5..496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95837.22095.1prot_M-pyrifera_M_contig95837.22095.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95837 5..496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95837.22095.1

>prot_M-pyrifera_M_contig95837.22095.1 ID=prot_M-pyrifera_M_contig95837.22095.1|Name=mRNA_M-pyrifera_M_contig95837.22095.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=164bp
AATLVICSTLAVGSTASAQLSPYAQGPQFQTMVRGIPSTCRSHDNMQVAF
YSDISLNNIGIATRINGNPIIIMNPNISNQFSDLVTVWWVAHECAHHALY
PQYNNETRADCLAIKQLVQYGLLSNASQLNAFSIELQNLPGNSTTGHLPG
PMRARAIAQCALS*
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mRNA from alignment at M-pyrifera_M_contig95837:5..496+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95837.22095.1 ID=mRNA_M-pyrifera_M_contig95837.22095.1|Name=mRNA_M-pyrifera_M_contig95837.22095.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig95837:5..496+ (Macrocystis pyrifera P11B4 male)
GCTGCTACGTTAGTAATTTGCTCAACATTAGCTGTTGGTTCAACAGCATC AGCTCAGTTAAGTCCATATGCTCAAGGGCCACAATTTCAGACTATGGTGC GTGGCATCCCATCAACATGTCGCTCACACGATAATATGCAAGTGGCTTTT TACTCGGATATATCACTAAACAATATCGGTATTGCAACGCGCATCAACGG AAATCCGATTATTATTATGAACCCGAACATATCTAATCAGTTTTCTGACC TTGTTACAGTTTGGTGGGTAGCTCACGAGTGCGCCCATCACGCACTGTAT CCGCAATACAACAACGAAACCAGAGCTGACTGTTTAGCTATCAAACAATT GGTTCAATATGGACTATTATCGAATGCAAGCCAACTTAATGCATTCTCTA TCGAGCTGCAAAACCTTCCCGGCAACTCGACCACAGGCCATTTGCCCGGA CCTATGCGCGCGCGAGCAATTGCGCAATGTGCTTTATCTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95837:5..496+

>mRNA_M-pyrifera_M_contig95837.22095.1 ID=mRNA_M-pyrifera_M_contig95837.22095.1|Name=mRNA_M-pyrifera_M_contig95837.22095.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=984bp|location=Sequence derived from alignment at M-pyrifera_M_contig95837:5..496+ (Macrocystis pyrifera P11B4 male)
GCTGCTACGTTAGTAATTTGCTCAACATTAGCTGTTGGTTCAACAGCATC
AGCTCAGTTAAGTCCATATGCTCAAGGGCCACAATTTCAGACTATGGTGC
GTGGCATCCCATCAACATGTCGCTCACACGATAATATGCAAGTGGCTTTT
TACTCGGATATATCACTAAACAATATCGGTATTGCAACGCGCATCAACGG
AAATCCGATTATTATTATGAACCCGAACATATCTAATCAGTTTTCTGACC
TTGTTACAGTTTGGTGGGTAGCTCACGAGTGCGCCCATCACGCACTGTAT
CCGCAATACAACAACGAAACCAGAGCTGACTGTTTAGCTATCAAACAATT
GGTTCAATATGGACTATTATCGAATGCAAGCCAACTTAATGCATTCTCTA
TCGAGCTGCAAAACCTTCCCGGCAACTCGACCACAGGCCATTTGCCCGGA
CCTATGCGCGCGCGAGCAATTGCGCAATGTGCTTTATCTTAAGCTGCTAC
GTTAGTAATTTGCTCAACATTAGCTGTTGGTTCAACAGCATCAGCTCAGT
TAAGTCCATATGCTCAAGGGCCACAATTTCAGACTATGGTGCGTGGCATC
CCATCAACATGTCGCTCACACGATAATATGCAAGTGGCTTTTTACTCGGA
TATATCACTAAACAATATCGGTATTGCAACGCGCATCAACGGAAATCCGA
TTATTATTATGAACCCGAACATATCTAATCAGTTTTCTGACCTTGTTACA
GTTTGGTGGGTAGCTCACGAGTGCGCCCATCACGCACTGTATCCGCAATA
CAACAACGAAACCAGAGCTGACTGTTTAGCTATCAAACAATTGGTTCAAT
ATGGACTATTATCGAATGCAAGCCAACTTAATGCATTCTCTATCGAGCTG
CAAAACCTTCCCGGCAACTCGACCACAGGCCATTTGCCCGGACCTATGCG
CGCGCGAGCAATTGCGCAATGTGCTTTATCTTAA
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