mRNA_M-pyrifera_M_contig95822.22091.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95822.22091.1
Unique NamemRNA_M-pyrifera_M_contig95822.22091.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig95822.22091.1 vs. uniprot
Match: A0A7X1L1Z3_9DELT (Uncharacterized protein n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A7X1L1Z3_9DELT)

HSP 1 Score: 79.0 bits (193), Expect = 3.020e-13
Identity = 57/199 (28.64%), Postives = 102/199 (51.26%), Query Frame = 1 
Query:  130 NQDNIRAVGRMDHVMN-LASAFSTISDNVTTIIGQMKSTVLDYQSQRGASVIVIAGLLGLLLFEIIKVANPVLFLFAAYAAKRHFMPRTYG-KRLCKTALLINLAILLYFVGTFAFLSGRYVIPLSLIFLLWAPFTIEHFYQYFCVCQRKNIKYWYYPITGIILTGFLVYNISHAHYDKEYIRNAGQWTERHVAESTEL 720
            NQD I  +GR+    N L +    +S N+      +  TVL   S++    +VI+GL G+ L+++++   PV  L   +A ++  MP   G K++     ++NL I   F+G   F+  R++IP SL+ LLW PF++ +F Q +   +      + +PI  +      VY     +  K YI +AG W ++++ + ++L
Sbjct:  234 NQD-ISQLGRLSEFWNQLQNGLILLSTNINEKAVIISQTVLHEYSKKWDLTMVISGLSGIYLYKLVETLWPVHTLLFGHAFRKKLMPAEKGIKKIIIYFTILNLVIPAIFLGQQFFVLNRFLIPASLLLLLWTPFSLHYFMQKWLDKKTVFKNNFAFPILSLAFLIMFVYAFIPPNQSKAYIVSAGTWLKQNMLQQSKL 431
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BLAST of mRNA_M-pyrifera_M_contig95822.22091.1 vs. uniprot
Match: A0A7W0ET54_9DELT (Uncharacterized protein n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A7W0ET54_9DELT)

HSP 1 Score: 75.9 bits (185), Expect = 3.440e-12
Identity = 62/242 (25.62%), Postives = 113/242 (46.69%), Query Frame = 1 
Query:    4 FLPLTLLFANTLSRRKKITYLFAAILPVLVGLFAFVFIAHAFNQDN--IRAVGRMDHVMNLASAFSTISDNVTTIIGQMKSTVLDYQSQRGASVIVIAGLLGLLLFEIIKVANPVLFLFAAYAAKRHFMPRTYG-KRLCKTALLINLAILLYFVGTFAFLSGRYVIPLSLIFLLWAPFTIEHFYQYFCVCQRKNIKYWYYPITGIILTGFLVYNISHAHYDKEYIRNAGQWTERHVAESTEL 720
            F PL LLF +  +   K+     A    ++ +   + I    N  N  I  +G   H+  L +    +S N+      +  +VL+  S+     +VI+GL GL L++++    PV  L   +A  +  MP   G K++     ++NL I   F+G    +S R+++P SL+ LLW PF++ H  Q +   +      + +PI  +      +Y     +  K YI  AG+W ++++ + ++L
Sbjct:  191 FGPLVLLFRSGTTPWNKLGNTLKAYSLNIIAIS--IIITWWLNMPNRTIAQLGEFRHLSQLQNGLMLLSTNINEKAAIISQSVLNDYSRDWGLTMVISGLTGLYLYKLVATLWPVHTLLFGHAFCKRLMPSEKGIKKVIIYFSILNLVIPALFLGQQFLISYRFLMPASLLLLLWTPFSLHHIMQKWLNKKTVFKNNFVFPILSLAFLIMFIYAFIPPNQSKAYITIAGKWLKQNIPQQSKL 430
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BLAST of mRNA_M-pyrifera_M_contig95822.22091.1 vs. uniprot
Match: A0A661KWY2_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661KWY2_9DELT)

HSP 1 Score: 64.7 bits (156), Expect = 2.040e-8
Identity = 63/224 (28.12%), Postives = 111/224 (49.55%), Query Frame = 1 
Query:   40 SRRKKITYLFAAILPVLVGLFAFVFIAHAFNQDNIRAVGRMDHVMNLASAFSTISDNVTTIIGQMKSTVLDYQSQRGASVIVIAGLLGLLLFEIIKVANPVLFLFAAYAA-KRHFMPRTYGKRLCKTALLINLAILLYFVGTFAFLSGRYVIPLSLIFLLWAPFTIEHFYQYFCVCQRKNIKYWYYPITGIILTGFLVYNISHA--HYDKEYIRNAGQWTERHV 702
            +R KK   L+A IL V+ G+ AF    H     NI    R+  +      FS +S  +        + +L   +++  ++ V +GL+G+ ++++I    PV FL A Y+  K  F        +    L IN+ I L+F+    FLS R+++P SL+ LL+ PF +E  Y      + +++K +    T I+LT F+++  ++    + K YIR+A  W   ++
Sbjct:  183 NRMKKALLLYA-ILLVISGMAAFF--CHL-KGINIYTSTRLSEINIYMKCFSKVSAKLHHKGVMAGNAILAKPAKKWGTLFVSSGLMGIFIYKLIMTIWPVHFLLALYSILKGLFSTNRKIMAIIWILLAINILIPLFFLYESFFLSYRFLMPASLLILLFVPFALERIYNNIRENKNRSLKIFN---TIIMLTFFVLFIGAYMPPKHSKAYIRDAAIWIRHNI 399
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BLAST of mRNA_M-pyrifera_M_contig95822.22091.1 vs. uniprot
Match: K1ZXM7_9BACT (Uncharacterized protein n=1 Tax=uncultured bacterium TaxID=77133 RepID=K1ZXM7_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 4.510e-6
Identity = 58/245 (23.67%), Postives = 103/245 (42.04%), Query Frame = 1 
Query:    1 LFLPLTLLFANTLSRRKKI-TYLFAAILPVLVGLFAFVFI----AHAFNQDNIRAVGRMDHVMNLASAFSTISDNVTTIIGQMKSTVLDYQSQRGASVIVIAGLLGLLLFEIIKVANPVLFLFAAYAAKRHFMPRTYGKRLCKTALLINLAILLYFVGTFAFLSGRYVIPLSLIFLLWAPFTIEHFYQYFCVCQRKNIKYWYYPITGIILTGFLVYNISHAHYDKEYIRNAGQWTERHVAESTEL 720
            L LPLT  F   L    +I  +L   IL  +V  F   +I    A++F++ N       +         S ++ N       +   VL   S R   +I+   L+G  +  +I   + +  +   YA  +   P    +      + +N+ I   F+    FL+ RY++ LSL+F+LW PF ++       + ++  ++ W        +  F +  + H  Y K+YIR+AG W   H  E  ++
Sbjct:  189 LLLPLTAFFMPRLRVGARIHAFLQLNILTFIVIAFMIFWILLHPAYSFSRLN-------EVQFQFLHGISELTKNYNLASHALALHVLSVYSARDTGLILFCMLVGWYITNVIGNVSLIYAVLIGYAWYKRISPFKEMRVAVWMYIAVNILITAVFLIDHLFLAKRYLMALSLVFMLWVPFALDD------LLKQWAVRKWPVIAAVFFIVIFGISGVVHFGYSKQYIRDAGDWLAIHTREHAKI 420
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95822.22091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7X1L1Z3_9DELT3.020e-1328.64Uncharacterized protein n=1 Tax=Desulfobacteraceae... [more]
A0A7W0ET54_9DELT3.440e-1225.62Uncharacterized protein n=1 Tax=Desulfobacteraceae... [more]
A0A661KWY2_9DELT2.040e-828.13Uncharacterized protein (Fragment) n=1 Tax=Deltapr... [more]
K1ZXM7_9BACT4.510e-623.67Uncharacterized protein n=1 Tax=uncultured bacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95822contigM-pyrifera_M_contig95822:4..723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size720
Cds size720
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816873.0461116-CDS-M-pyrifera_M_contig95822:3..7231622816873.0461116-CDS-M-pyrifera_M_contig95822:3..723Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95822 4..723 -
1692278228.721662-CDS-M-pyrifera_M_contig95822:3..7231692278228.721662-CDS-M-pyrifera_M_contig95822:3..723Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95822 4..723 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95822.22091.1prot_M-pyrifera_M_contig95822.22091.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95822 4..723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95822.22091.1

>prot_M-pyrifera_M_contig95822.22091.1 ID=prot_M-pyrifera_M_contig95822.22091.1|Name=mRNA_M-pyrifera_M_contig95822.22091.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=240bp
LFLPLTLLFANTLSRRKKITYLFAAILPVLVGLFAFVFIAHAFNQDNIRA
VGRMDHVMNLASAFSTISDNVTTIIGQMKSTVLDYQSQRGASVIVIAGLL
GLLLFEIIKVANPVLFLFAAYAAKRHFMPRTYGKRLCKTALLINLAILLY
FVGTFAFLSGRYVIPLSLIFLLWAPFTIEHFYQYFCVCQRKNIKYWYYPI
TGIILTGFLVYNISHAHYDKEYIRNAGQWTERHVAESTEL
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mRNA from alignment at M-pyrifera_M_contig95822:4..723-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95822.22091.1 ID=mRNA_M-pyrifera_M_contig95822.22091.1|Name=mRNA_M-pyrifera_M_contig95822.22091.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig95822:4..723- (Macrocystis pyrifera P11B4 male)
CTATTTTTGCCTTTAACACTTTTATTTGCCAATACATTGAGTCGACGTAA
AAAAATCACGTATTTGTTTGCCGCGATACTACCGGTGTTGGTCGGCTTAT
TTGCGTTTGTATTTATAGCACATGCCTTTAATCAAGATAACATACGTGCT
GTTGGGCGTATGGACCATGTAATGAACTTAGCATCAGCATTTTCAACAAT
TAGCGATAATGTGACAACAATTATTGGTCAAATGAAATCCACTGTGTTGG
ATTATCAATCACAGCGTGGGGCGTCTGTCATTGTGATTGCCGGTTTACTA
GGATTGTTGTTATTTGAAATTATCAAAGTTGCAAACCCTGTGCTTTTCTT
ATTTGCTGCATATGCGGCTAAGCGGCATTTTATGCCACGTACATATGGTA
AACGTTTATGTAAAACTGCGTTGCTAATTAATTTAGCAATTCTTTTGTAT
TTTGTCGGTACCTTTGCCTTCTTGTCTGGGCGATATGTGATCCCACTGTC
GTTAATCTTTTTATTGTGGGCACCTTTTACCATTGAACATTTCTACCAAT
ATTTTTGCGTTTGCCAACGTAAAAATATCAAGTATTGGTATTACCCTATA
ACGGGCATTATTTTAACAGGCTTTCTAGTCTACAATATTTCGCATGCGCA
TTATGATAAAGAGTATATACGTAATGCAGGACAGTGGACTGAGCGCCATG
TAGCTGAGAGTACTGAATTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95822:4..723-

>mRNA_M-pyrifera_M_contig95822.22091.1 ID=mRNA_M-pyrifera_M_contig95822.22091.1|Name=mRNA_M-pyrifera_M_contig95822.22091.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1440bp|location=Sequence derived from alignment at M-pyrifera_M_contig95822:4..723- (Macrocystis pyrifera P11B4 male)
CTATTTTTGCCTTTAACACTTTTATTTGCCAATACATTGAGTCGACGTAA
AAAAATCACGTATTTGTTTGCCGCGATACTACCGGTGTTGGTCGGCTTAT
TTGCGTTTGTATTTATAGCACATGCCTTTAATCAAGATAACATACGTGCT
GTTGGGCGTATGGACCATGTAATGAACTTAGCATCAGCATTTTCAACAAT
TAGCGATAATGTGACAACAATTATTGGTCAAATGAAATCCACTGTGTTGG
ATTATCAATCACAGCGTGGGGCGTCTGTCATTGTGATTGCCGGTTTACTA
GGATTGTTGTTATTTGAAATTATCAAAGTTGCAAACCCTGTGCTTTTCTT
ATTTGCTGCATATGCGGCTAAGCGGCATTTTATGCCACGTACATATGGTA
AACGTTTATGTAAAACTGCGTTGCTAATTAATTTAGCAATTCTTTTGTAT
TTTGTCGGTACCTTTGCCTTCTTGTCTGGGCGATATGTGATCCCACTGTC
GTTAATCTTTTTATTGTGGGCACCTTTTACCATTGAACATTTCTACCAAT
ATTTTTGCGTTTGCCAACGTAAAAATATCAAGTATTGGTATTACCCTATA
ACGGGCATTATTTTAACAGGCTTTCTAGTCTACAATATTTCGCATGCGCA
TTATGATAAAGAGTATATACGTAATGCAGGACAGTGGACTGAGCGCCATG
TAGCTGAGAGTACTGAATTGCTATTTTTGCCTTTAACACTTTTATTTGCC
AATACATTGAGTCGACGTAAAAAAATCACGTATTTGTTTGCCGCGATACT
ACCGGTGTTGGTCGGCTTATTTGCGTTTGTATTTATAGCACATGCCTTTA
ATCAAGATAACATACGTGCTGTTGGGCGTATGGACCATGTAATGAACTTA
GCATCAGCATTTTCAACAATTAGCGATAATGTGACAACAATTATTGGTCA
AATGAAATCCACTGTGTTGGATTATCAATCACAGCGTGGGGCGTCTGTCA
TTGTGATTGCCGGTTTACTAGGATTGTTGTTATTTGAAATTATCAAAGTT
GCAAACCCTGTGCTTTTCTTATTTGCTGCATATGCGGCTAAGCGGCATTT
TATGCCACGTACATATGGTAAACGTTTATGTAAAACTGCGTTGCTAATTA
ATTTAGCAATTCTTTTGTATTTTGTCGGTACCTTTGCCTTCTTGTCTGGG
CGATATGTGATCCCACTGTCGTTAATCTTTTTATTGTGGGCACCTTTTAC
CATTGAACATTTCTACCAATATTTTTGCGTTTGCCAACGTAAAAATATCA
AGTATTGGTATTACCCTATAACGGGCATTATTTTAACAGGCTTTCTAGTC
TACAATATTTCGCATGCGCATTATGATAAAGAGTATATACGTAATGCAGG
ACAGTGGACTGAGCGCCATGTAGCTGAGAGTACTGAATTG
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