mRNA_M-pyrifera_M_contig95814.22085.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95814.22085.1
Unique NamemRNA_M-pyrifera_M_contig95814.22085.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig95814.22085.1 vs. uniprot
Match: A0A7S4HGP7_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HGP7_9EUKA)

HSP 1 Score: 74.7 bits (182), Expect = 3.350e-14
Identity = 32/49 (65.31%), Postives = 38/49 (77.55%), Query Frame = 1
Query:   37 SYPMGGNIYPVGIYWTEITLGTPPQSFQVAVDSGSSDLLVPSITCDVCH 183
            ++ MGGNIYPVGIYW  + +GTP Q+   AVDSGSSDLLVPS +C  CH
Sbjct:   61 NFEMGGNIYPVGIYWVSVNIGTPAQALLAAVDSGSSDLLVPSSSCTGCH 109          
BLAST of mRNA_M-pyrifera_M_contig95814.22085.1 vs. uniprot
Match: A0A218W9R2_PUNGR (Peptidase A1 domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A218W9R2_PUNGR)

HSP 1 Score: 57.4 bits (137), Expect = 1.640e-8
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 1
Query:   13 SADSGEYYSYPMGGNIYPVGIYWTEITLGTPPQSFQVAVDSGSSDLLVPSITCDVCHL 186
            S +S    ++P+ GN +PVGIY+T++ LG+PPQ F V +D+GS  L V   +C  C L
Sbjct:   62 STNSAGVVNFPVDGNSFPVGIYYTKVQLGSPPQEFYVLIDTGSDVLWVSCSSCSGCPL 119          
BLAST of mRNA_M-pyrifera_M_contig95814.22085.1 vs. uniprot
Match: A0A2I0LDP3_PUNGR (Peptidase A1 domain-containing protein n=2 Tax=Punica granatum TaxID=22663 RepID=A0A2I0LDP3_PUNGR)

HSP 1 Score: 57.4 bits (137), Expect = 4.410e-8
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 1
Query:   13 SADSGEYYSYPMGGNIYPVGIYWTEITLGTPPQSFQVAVDSGSSDLLVPSITCDVCHL 186
            S +S    ++P+ GN +PVGIY+T++ LG+PPQ F V +D+GS  L V   +C  C L
Sbjct:   62 STNSAGVVNFPVDGNSFPVGIYYTKVQLGSPPQEFYVLIDTGSDVLWVSCSSCSGCPL 119          
BLAST of mRNA_M-pyrifera_M_contig95814.22085.1 vs. uniprot
Match: A0A813EJ74_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EJ74_POLGL)

HSP 1 Score: 56.2 bits (134), Expect = 1.120e-7
Identity = 25/48 (52.08%), Postives = 31/48 (64.58%), Query Frame = 1
Query:   37 SYPMGGNIYPVGIYWTEITLGTPPQSFQVAVDSGSSDLLVPSITCDVC 180
            S   GG+++P  IYWT + +GTPPQ F VA+DSGS DL V    C  C
Sbjct:   52 SIDAGGSVWPTAIYWTLVQIGTPPQDFPVAIDSGSGDLDVGGKGCKGC 99          
BLAST of mRNA_M-pyrifera_M_contig95814.22085.1 vs. uniprot
Match: A0A835ZPE1_SHEEP (Uncharacterized protein n=1 Tax=Ovis aries TaxID=9940 RepID=A0A835ZPE1_SHEEP)

HSP 1 Score: 54.3 bits (129), Expect = 5.570e-7
Identity = 28/53 (52.83%), Postives = 34/53 (64.15%), Query Frame = 1
Query:   37 SYPMGGNIYPVG--------IYWTEITLGTPPQSFQVAVDSGSSDLLVPSITC 171
            ++ + G IYPV         +Y   IT+GTPPQ FQV  D+GSSDLLVPSI C
Sbjct: 1446 TFTLNGIIYPVPAQAYFLKMLYVGNITIGTPPQEFQVVFDTGSSDLLVPSINC 1498          
BLAST of mRNA_M-pyrifera_M_contig95814.22085.1 vs. uniprot
Match: A0A0L0DPR5_THETB (Peptidase A1 domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DPR5_THETB)

HSP 1 Score: 53.5 bits (127), Expect = 1.030e-6
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 1
Query:   46 MGGNIYPVGIYWTEITLGTPPQSFQVAVDSGSSDLLVPSITCDVC 180
            +GG+I+PV I+WT + +G+PP  F VA+DSGS  L VP   C  C
Sbjct:   66 VGGSIWPVSIFWTNVEIGSPPVFFPVAIDSGSFTLNVPLAGCHGC 110          
BLAST of mRNA_M-pyrifera_M_contig95814.22085.1 vs. uniprot
Match: A0A8K0J4Y4_9HYPO (Saccharopepsin n=1 Tax=Claviceps africana TaxID=83212 RepID=A0A8K0J4Y4_9HYPO)

HSP 1 Score: 53.1 bits (126), Expect = 1.370e-6
Identity = 27/55 (49.09%), Postives = 39/55 (70.91%), Query Frame = 1
Query:   43 PMGGNIYPV-----GIYWTEITLGTPPQSFQVAVDSGSSDLLVPSITCD--VCHL 186
            P GG++ PV       Y++EIT+GTPPQ+F+V +D+GSS+L VPS +C    C+L
Sbjct:   69 PKGGHLVPVTNFMNAQYFSEITVGTPPQTFKVVLDTGSSNLWVPSQSCSSIACYL 123          
BLAST of mRNA_M-pyrifera_M_contig95814.22085.1 vs. uniprot
Match: A0A1Y1HNH9_KLENI (Eukaryotic aspartyl protease family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HNH9_KLENI)

HSP 1 Score: 53.1 bits (126), Expect = 1.390e-6
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 1
Query:   46 MGGNIYPVGIYWTEITLGTPPQSFQVAVDSGSSDLLVPSITCDVC 180
            +GG+  P+G Y+ EI LGTPPQ FQ+ VD+GS+ + VP+  C  C
Sbjct:  117 LGGSTIPLGYYFAEIALGTPPQRFQMIVDTGSAIMYVPAKECVSC 161          
BLAST of mRNA_M-pyrifera_M_contig95814.22085.1 vs. uniprot
Match: A0A063BPB4_USTVR (Peptidase A1 domain-containing protein n=1 Tax=Ustilaginoidea virens TaxID=1159556 RepID=A0A063BPB4_USTVR)

HSP 1 Score: 52.4 bits (124), Expect = 2.570e-6
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 1
Query:   43 PMGGNIYPV-----GIYWTEITLGTPPQSFQVAVDSGSSDLLVPSITC 171
            P GG+  PV       Y++EIT+GTPPQSF+V +D+GSS+L VPS +C
Sbjct:   70 PQGGHPVPVTNFMNAQYFSEITIGTPPQSFKVVLDTGSSNLWVPSQSC 117          
BLAST of mRNA_M-pyrifera_M_contig95814.22085.1 vs. uniprot
Match: G2R7T2_THETT (Peptidase A1 domain-containing protein n=2 Tax=Thermothielavioides terrestris TaxID=2587410 RepID=G2R7T2_THETT)

HSP 1 Score: 52.4 bits (124), Expect = 2.570e-6
Identity = 26/52 (50.00%), Postives = 38/52 (73.08%), Query Frame = 1
Query:   37 SYPMGGNIYPVGIYWTEITLGTPPQSFQVAVDSGSSDLLVPSITCD--VCHL 186
            ++P+  + Y    Y++EITLGTPPQSF+V +D+GSS+L VPS+ C    C+L
Sbjct:   73 NHPVPISNYMNAQYFSEITLGTPPQSFKVVLDTGSSNLWVPSVECGSIACYL 124          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95814.22085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4HGP7_9EUKA3.350e-1465.31Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A218W9R2_PUNGR1.640e-844.83Peptidase A1 domain-containing protein n=1 Tax=Pun... [more]
A0A2I0LDP3_PUNGR4.410e-844.83Peptidase A1 domain-containing protein n=2 Tax=Pun... [more]
A0A813EJ74_POLGL1.120e-752.08Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A835ZPE1_SHEEP5.570e-752.83Uncharacterized protein n=1 Tax=Ovis aries TaxID=9... [more]
A0A0L0DPR5_THETB1.030e-651.11Peptidase A1 domain-containing protein n=1 Tax=The... [more]
A0A8K0J4Y4_9HYPO1.370e-649.09Saccharopepsin n=1 Tax=Claviceps africana TaxID=83... [more]
A0A1Y1HNH9_KLENI1.390e-651.11Eukaryotic aspartyl protease family protein n=1 Ta... [more]
A0A063BPB4_USTVR2.570e-654.17Peptidase A1 domain-containing protein n=1 Tax=Ust... [more]
G2R7T2_THETT2.570e-650.00Peptidase A1 domain-containing protein n=2 Tax=The... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95814contigM-pyrifera_M_contig95814:536..721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue3.3e-07
Seed eggNOG ortholog2903.EOD09464
KEGG koko:K01379,ko:K04521,ko:K06002,ko:K07747
KEGG Pathwayko04071,ko04140,ko04142,ko04210,ko04915,ko04974,ko05010,ko05152,map04071,map04140,map04142,map04210,map04915,map04974,map05010,map05152
Hectar predicted targeting categoryother localisation
EggNOG free text desc.aspartic-type endopeptidase activity
EggNOG OGsKOG1339@1,KOG1339@2759
EC3.4.23.1,3.4.23.45,3.4.23.46,3.4.23.5
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04147
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816872.71059-CDS-M-pyrifera_M_contig95814:535..7211622816872.71059-CDS-M-pyrifera_M_contig95814:535..721Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95814 536..721 +
1692278228.499015-CDS-M-pyrifera_M_contig95814:535..7211692278228.499015-CDS-M-pyrifera_M_contig95814:535..721Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95814 536..721 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95814.22085.1prot_M-pyrifera_M_contig95814.22085.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95814 536..721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95814.22085.1

>prot_M-pyrifera_M_contig95814.22085.1 ID=prot_M-pyrifera_M_contig95814.22085.1|Name=mRNA_M-pyrifera_M_contig95814.22085.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=62bp
RRYGSADSGEYYSYPMGGNIYPVGIYWTEITLGTPPQSFQVAVDSGSSDL
LVPSITCDVCHL
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mRNA from alignment at M-pyrifera_M_contig95814:536..721+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95814.22085.1 ID=mRNA_M-pyrifera_M_contig95814.22085.1|Name=mRNA_M-pyrifera_M_contig95814.22085.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=186bp|location=Sequence derived from alignment at M-pyrifera_M_contig95814:536..721+ (Macrocystis pyrifera P11B4 male)
CGTCGCTACGGAAGTGCCGACAGCGGTGAGTACTATAGCTACCCAATGGG TGGCAACATTTACCCGGTGGGCATCTACTGGACCGAGATCACGCTTGGTA CCCCGCCTCAGTCCTTCCAGGTTGCCGTCGATAGCGGCTCCTCCGACCTT CTCGTGCCATCCATCACTTGCGATGTATGCCACCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95814:536..721+

>mRNA_M-pyrifera_M_contig95814.22085.1 ID=mRNA_M-pyrifera_M_contig95814.22085.1|Name=mRNA_M-pyrifera_M_contig95814.22085.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig95814:536..721+ (Macrocystis pyrifera P11B4 male)
CGTCGCTACGGAAGTGCCGACAGCGGTGAGTACTATAGCTACCCAATGGG
TGGCAACATTTACCCGGTGGGCATCTACTGGACCGAGATCACGCTTGGTA
CCCCGCCTCAGTCCTTCCAGGTTGCCGTCGATAGCGGCTCCTCCGACCTT
CTCGTGCCATCCATCACTTGCGATGTATGCCACCTCCGTCGCTACGGAAG
TGCCGACAGCGGTGAGTACTATAGCTACCCAATGGGTGGCAACATTTACC
CGGTGGGCATCTACTGGACCGAGATCACGCTTGGTACCCCGCCTCAGTCC
TTCCAGGTTGCCGTCGATAGCGGCTCCTCCGACCTTCTCGTGCCATCCAT
CACTTGCGATGTATGCCACCTC
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