mRNA_M-pyrifera_M_contig9577.22082.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9577.22082.1
Unique NamemRNA_M-pyrifera_M_contig9577.22082.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig9577.22082.1 vs. uniprot
Match: A0A6H5JMA2_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA2_9PHAE)

HSP 1 Score: 271 bits (692), Expect = 4.970e-75
Identity = 204/469 (43.50%), Postives = 258/469 (55.01%), Query Frame = 2
Query:  938 QMRRRFVLTRLSRESGRPVDQMTTVLDLAGMGMRHM--SKEAVSYTRRISDIFQDNYSGMTCKLLVVNAPWVFSKGWQIIEGFLSEDTIAKVKVLGKGEEGLKELERYIPRENIPEFLGGESHAVIGPTDPLWVEVDSAMRAWVQGEDPFLDRGDVRQVAARIGRERSAXXXXXXXXXXXXXXEE-----AVAVGGVETVT--AIPGSTTKKGQGERRTPAEGFLDREGGVFGVEQGLEEVAAAAVAARK------------------GGAEGEGEYEGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLHEVLHNAE-TDGSGSSSRRKSKPKVRLSVVREEGLDALSMRRRRRKREDAARENEKEAVAEEAVSEEGVGGTREGNGEVDRGAARG---IRERVVGVLLGGLVPILTAVFAEVVSAMLAAAKVLLSAAEDLLRFLRDALFELVEVED 2251
            ++RRRFVLTRLSRE+GRPVDQMTTVLDL G+GM+HM  +KEA++YTRRISD+FQDNYSGMT  LL++NAPWVFSKGWQ++E FLSEDT+AKVKVLGKGE GLK+LE YIP+ENIPEFLGGES AVIGP+DPLW +VD A+R W    DPFLD  +V++V+ RI RER++  XXXXXXXXXXXX       A+A  G + V   A+P   T       R    G  D  G    V    E  AA+    RK                   G   +GE EGG                                        R  + L ++E T G+G  S    +    LSV R    D      R+ +         K    +E  SEEG+G T +  G+  +  A G   I ER +  +   L P+L A F ++V+ + +  +VL    E +L  LRD  FE +EVE+
Sbjct:  483 EVRRRFVLTRLSREAGRPVDQMTTVLDLTGLGMKHMRQAKEAMAYTRRISDVFQDNYSGMTSSLLILNAPWVFSKGWQVVESFLSEDTVAKVKVLGKGEAGLKQLEEYIPKENIPEFLGGESRAVIGPSDPLWSDVDRAVRLWGDDGDPFLDPSEVKRVSRRIARERTSSAXXXXXXXXXXXXXXXXXXXAIAASGAKGVQEEAVPSPVTATTGAVERDSKRGAADC-GKKVRVTSSREAAAASVSRVRKTTRSSSSKRSKRQLGVPDSGKTVKGESEGG----------------LGHAGGEPAVDGEEHEDRKRKNHHRQRDGLVSSEGTTGAGPPSLSSYRRASSLSVSRRAASDEAGSPSRKTR-------GSKRTTPQEDYSEEGLG-TEDIIGDDGKAVALGDTVIGERALQGVAKALGPVLGAYFLQIVAGLASVGRVLWGTVESVLLLLRDLFFEQIEVEE 926          
BLAST of mRNA_M-pyrifera_M_contig9577.22082.1 vs. uniprot
Match: D7FPB8_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPB8_ECTSI)

HSP 1 Score: 264 bits (675), Expect = 8.980e-73
Identity = 125/171 (73.10%), Postives = 149/171 (87.13%), Query Frame = 2
Query:  932 LFQMRRRFVLTRLSRESGRPVDQMTTVLDLAGMGMRHM--SKEAVSYTRRISDIFQDNYSGMTCKLLVVNAPWVFSKGWQIIEGFLSEDTIAKVKVLGKGEEGLKELERYIPRENIPEFLGGESHAVIGPTDPLWVEVDSAMRAWVQGEDPFLDRGDVRQVAARIGRERSA 1438
            L Q+RRRFVLTRLSRE+GRPVDQMTTVLDL G+GM+HM  +KEA++YTRRISDIFQDNYSGMTC LL++NAPWVFSKGWQ++E FLSEDT+AKVKVLGKGE GL++LE YIP+ENIPEFLGGES AVIGP+DPLW + D A+R W    DPFLD  +V++V+ RI  ER++
Sbjct:  467 LMQVRRRFVLTRLSREAGRPVDQMTTVLDLTGLGMKHMRQAKEAMAYTRRISDIFQDNYSGMTCSLLILNAPWVFSKGWQVVESFLSEDTVAKVKVLGKGEAGLQQLEEYIPKENIPEFLGGESRAVIGPSDPLWSDFDRAVRLWGDDGDPFLDPSEVKRVSRRIAGERTS 637          
BLAST of mRNA_M-pyrifera_M_contig9577.22082.1 vs. uniprot
Match: A0A836C941_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C941_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.750e-31
Identity = 76/175 (43.43%), Postives = 106/175 (60.57%), Query Frame = 1
Query:  103 NALDVEVQKAAALAVDNLPAAQRESFDVVKVFAFGDPR---------DAEKKGSLSEEDIRALDTVAICGDRDGVVLAFLRHSKFDVPKAKESIRRCCAWRREHEAG-IFDRAVAPAKMHKHRTHWPTGFHKQDCAGRPVFYDRVGLSDLSALRAEPDGLDQDEMVQIFCQNMEV 597
            +A D EV+   A  V  LP+ +R + D ++ FA+G             AE+   L  ED+ AL  V +CGD DG++L+FLR SK+D+ KAK+ +R    WRR++ A  +F R   P K+ +HR HWPT FH  D  GRPV YDR+G +D+ A+  +P GL  DE+V I+C NMEV
Sbjct:  152 DARDAEVRAGTAALVAALPSQRRAALDALREFAYGGXXXXXXXXXXXSAER--CLPSEDLEALAAVVMCGDTDGMLLSFLRPSKYDLEKAKDLMRAAARWRRDNAANAMFARRPPPHKLARHRRHWPTSFHGLDREGRPVLYDRIGSADVGAMLRDPGGLTLDEVVLIYCLNMEV 324          
BLAST of mRNA_M-pyrifera_M_contig9577.22082.1 vs. uniprot
Match: A0A7R9Y9D9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9D9_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 3.800e-19
Identity = 44/136 (32.35%), Postives = 81/136 (59.56%), Query Frame = 2
Query:  938 QMRRRFVLTRLSRESGRPVDQMTTVLDLAGMGMRHMSKEAVSYTRRISDIFQDNYSGMTCKLLVVNAPWVFSKGWQIIEGFLSEDTIAKVKVLGKGEEGLKELERYIPRENIPEFLGGESHAVIGPTDPLWVEVDS 1345
            +++RR++L +LSR++GR V + + +LDL G+  R  S     Y +RIS  F +NY  +   ++V NAP +F + W +++GF+ ++T+ KV++L   +   +++   +    +P+F GG S   IG  D    ++DS
Sbjct:    4 EIKRRYLLPKLSRQAGRRVGRFSVLLDLTGLDGRFFSTSVFGYLQRISKAFSNNYEELQHTIVVANAPRIFQRFWSLVKGFVPKETLQKVRILDSNKPAAEQIGDLVEVSQLPQFFGGTSLCGIGEKDDGGFKLDS 139          
BLAST of mRNA_M-pyrifera_M_contig9577.22082.1 vs. uniprot
Match: B6K2U6_SCHJY (Sec14 cytosolic factor family Sec14 n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6K2U6_SCHJY)

HSP 1 Score: 85.1 bits (209), Expect = 2.350e-14
Identity = 57/156 (36.54%), Postives = 82/156 (52.56%), Query Frame = 2
Query:  890 ITPPRRVLQNVLAFLFQMRRRFVLTRLSRESGRPVDQMTTVLDLAGMGMRHMSKEAVSYTRRISDIFQDNYSGMTCKLLVVNAPWVFSKGWQIIEGFLSEDTIAKVKVLGKGEEGLKELERYIPRENIPEFLGGE-------SHAVIGPT-DPLWV 1333
            IT   R+LQN L + +++         SR SG  ++   T++DL G+G+  +     SY ++ S I QD Y     KL +VNAPW FS  + +I+GFL EDT+ K+ VLG   +  K L   IP EN+P   GG+         +  GP  DP W+
Sbjct:  135 ITTQERMLQN-LVYEYEVLAEERFPACSRMSGGLIETSCTIMDLKGVGLTSIHS-VYSYVKQASRISQDYYPERMGKLYLVNAPWGFSSAFNLIKGFLDEDTVKKIHVLGSSYQ--KHLLAQIPAENLPLRFGGKCDCPGGCEFSDAGPWHDPQWM 286          
BLAST of mRNA_M-pyrifera_M_contig9577.22082.1 vs. uniprot
Match: A0A6P8H2X2_ACTTE (SEC14-like protein 2 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8H2X2_ACTTE)

HSP 1 Score: 86.3 bits (212), Expect = 2.970e-14
Identity = 35/108 (32.41%), Postives = 73/108 (67.59%), Query Frame = 2
Query:  971 SRESGRPVDQMTTVLDLAGMGMRHMSKEAVSYTRRISDIFQDNYSGMTCKLLVVNAPWVFSKGWQIIEGFLSEDTIAKVKVLGKGEEGLKELERYIPRENIPEFLGGE 1294
            ++E+G+ V Q+  +LD+ G+G++H+    V+    ++ ++++N+ G   ++ V+ AP +F   + +++ FLSEDT  K+K+LG  ++  ++L++YI  +N+PEF GG+
Sbjct:  139 AKETGKRVHQVVNILDMEGLGLKHLWGPGVALFNSVATLYENNFPGYWKRIFVIKAPLIFPAAYNLVKPFLSEDTKNKIKILG--DDWKEQLKKYIDEDNLPEFYGGK 244          
BLAST of mRNA_M-pyrifera_M_contig9577.22082.1 vs. uniprot
Match: UPI00138FD997 (SEC14-like protein 2 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FD997)

HSP 1 Score: 85.5 bits (210), Expect = 8.670e-14
Identity = 39/108 (36.11%), Postives = 69/108 (63.89%), Query Frame = 2
Query:  971 SRESGRPVDQMTTVLDLAGMGMRHMSKEAVSYTRRISDIFQDNYSGMTCKLLVVNAPWVFSKGWQIIEGFLSEDTIAKVKVLGKGEEGLKELERYIPRENIPEFLGGE 1294
            S++ G+ VD++ T+LD+ G+GM+H+    V+    +   ++ NY G   ++LV+ AP +F   + +++ FLSE T  ++KVLG   +  KEL+ Y+  +N+PEF GG+
Sbjct:  139 SKKLGKRVDKVVTILDMEGLGMKHLWTPGVALFNSVLHFYESNYPGYWKQILVIKAPALFPVAYSLVKPFLSEYTRGQIKVLGS--DWKKELQEYVDEDNLPEFYGGK 244          
BLAST of mRNA_M-pyrifera_M_contig9577.22082.1 vs. uniprot
Match: A0A3M6TWR3_POCDA (CRAL-TRIO domain-containing protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TWR3_POCDA)

HSP 1 Score: 83.6 bits (205), Expect = 9.610e-14
Identity = 44/125 (35.20%), Postives = 75/125 (60.00%), Query Frame = 2
Query:  953 FVLTRLSRESGRPVDQMTTVLDLAGMGMRHMSKEAVSYTRRISDIFQDNYSGMTCKLLVVNAPWVFSKGWQIIEGFLSEDTIAKVKVLGKGEEGLKELERYIPRENIPEFLGGESHAVIGPTDPL 1327
            F+  + S + G+ +DQ+  V+D+ G+G++H+ +  V+   +I+  ++DNY  M   +LV+NAP +F   + +++ FL+E T  KVK+LG   +   EL  YI  +N+PE+ GG      G  DPL
Sbjct:  128 FLSRQQSSKLGKHIDQVVMVMDMEGLGLKHLWRPGVTLFNKITAFYEDNYPEMMKNILVINAPRIFPIAYALVKPFLNEVTRNKVKILGV--DWKTELLEYIDEDNLPEYYGGTCKDPDG--DPL 248          
BLAST of mRNA_M-pyrifera_M_contig9577.22082.1 vs. uniprot
Match: UPI000F54FF49 (SEC14-like protein 2 isoform X1 n=4 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F54FF49)

HSP 1 Score: 83.6 bits (205), Expect = 2.360e-13
Identity = 44/125 (35.20%), Postives = 75/125 (60.00%), Query Frame = 2
Query:  953 FVLTRLSRESGRPVDQMTTVLDLAGMGMRHMSKEAVSYTRRISDIFQDNYSGMTCKLLVVNAPWVFSKGWQIIEGFLSEDTIAKVKVLGKGEEGLKELERYIPRENIPEFLGGESHAVIGPTDPL 1327
            F+  + S + G+ +DQ+  V+D+ G+G++H+ +  V+   +I+  ++DNY  M   +LV+NAP +F   + +++ FL+E T  KVK+LG   +   EL  YI  +N+PE+ GG      G  DPL
Sbjct:  128 FLSRQQSSKLGKHIDQVVMVMDMEGLGLKHLWRPGVTLFNKITAFYEDNYPEMMKNILVINAPRIFPIAYALVKPFLNEVTRNKVKILGV--DWKTELLEYIDEDNLPEYYGGTCKDPDG--DPL 248          
BLAST of mRNA_M-pyrifera_M_contig9577.22082.1 vs. uniprot
Match: A0A6V0GH43_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A6V0GH43_9DINO)

HSP 1 Score: 83.2 bits (204), Expect = 3.680e-13
Identity = 50/149 (33.56%), Postives = 82/149 (55.03%), Query Frame = 2
Query:  959 LTRLSRESGRPVDQMTTVLDLAGMGMRHMSKEAVSYTRRISDIFQDNYSGMTCKLLVVNAPWVFSKGWQIIEGFLSEDTIAKVKVLGKGEEGLKELERYIPRENIPEFLGGESHAVIGPTDPLWVEVDSAMRAWVQGEDPFLDRGDVRQ 1405
            +  LS   GRP    T V+DLAG+G++HM++ ++S  +++  I +D Y  M  +++VVNAP +F   W I++ F  E T AK+++ GK    +  L  ++  + IP+ LGG+ H   G  D  + E       ++ G  P  D  D+RQ
Sbjct:  270 MEELSVADGRPHMYFTVVVDLAGLGVKHMNRRSLSEYQQLVRIDEDLYPEMVKRVIVVNAPRIFDTIWSIVKYFFDEGTRAKIQIAGKTRPEVA-LAPFLESKWIPQALGGDLHVGSGGCDSAYCE------PFIIGATPVSD--DLRQ 409          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9577.22082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMA2_9PHAE4.970e-7543.50CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
D7FPB8_ECTSI8.980e-7373.10CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A836C941_9STRA1.750e-3143.43CRAL-TRIO domain-containing protein n=1 Tax=Tribon... [more]
A0A7R9Y9D9_9STRA3.800e-1932.35Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
B6K2U6_SCHJY2.350e-1436.54Sec14 cytosolic factor family Sec14 n=1 Tax=Schizo... [more]
A0A6P8H2X2_ACTTE2.970e-1432.41SEC14-like protein 2 n=1 Tax=Actinia tenebrosa Tax... [more]
UPI00138FD9978.670e-1436.11SEC14-like protein 2 n=1 Tax=Nematostella vectensi... [more]
A0A3M6TWR3_POCDA9.610e-1435.20CRAL-TRIO domain-containing protein n=1 Tax=Pocill... [more]
UPI000F54FF492.360e-1335.20SEC14-like protein 2 isoform X1 n=4 Tax=Pocillopor... [more]
A0A6V0GH43_9DINO3.680e-1333.56Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9577contigM-pyrifera_M_contig9577:3719..9327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score262.3
Seed ortholog evalue4e-67
Seed eggNOG ortholog2880.D7FPB8
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.macromolecule localization
EggNOG OGsKOG1471@1,KOG1471@2759
Ec32 ortholog descriptionCRAL-TRIO domain
Ec32 orthologEc-15_003980.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size2254
Cds size1314
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9577.22082.1prot_M-pyrifera_M_contig9577.22082.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9577 6968..9327 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816872.5189698-UTR-M-pyrifera_M_contig9577:3718..41081622816872.5189698-UTR-M-pyrifera_M_contig9577:3718..4108Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9577 3719..4108 +
1692278228.3766875-UTR-M-pyrifera_M_contig9577:3718..41081692278228.3766875-UTR-M-pyrifera_M_contig9577:3718..4108Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9577 3719..4108 +
1622816872.5339208-UTR-M-pyrifera_M_contig9577:6027..63091622816872.5339208-UTR-M-pyrifera_M_contig9577:6027..6309Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9577 6028..6309 +
1692278228.397596-UTR-M-pyrifera_M_contig9577:6027..63091692278228.397596-UTR-M-pyrifera_M_contig9577:6027..6309Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9577 6028..6309 +
1622816872.550328-UTR-M-pyrifera_M_contig9577:6699..69671622816872.550328-UTR-M-pyrifera_M_contig9577:6699..6967Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9577 6700..6967 +
1692278228.4070323-UTR-M-pyrifera_M_contig9577:6699..69671692278228.4070323-UTR-M-pyrifera_M_contig9577:6699..6967Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9577 6700..6967 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816872.5647748-CDS-M-pyrifera_M_contig9577:6967..72021622816872.5647748-CDS-M-pyrifera_M_contig9577:6967..7202Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9577 6968..7202 +
1692278228.416658-CDS-M-pyrifera_M_contig9577:6967..72021692278228.416658-CDS-M-pyrifera_M_contig9577:6967..7202Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9577 6968..7202 +
1622816872.576464-CDS-M-pyrifera_M_contig9577:8248..93271622816872.576464-CDS-M-pyrifera_M_contig9577:8248..9327Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9577 8249..9327 +
1692278228.4267747-CDS-M-pyrifera_M_contig9577:8248..93271692278228.4267747-CDS-M-pyrifera_M_contig9577:8248..9327Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9577 8249..9327 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9577.22082.1

>prot_M-pyrifera_M_contig9577.22082.1 ID=prot_M-pyrifera_M_contig9577.22082.1|Name=mRNA_M-pyrifera_M_contig9577.22082.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=438bp
MRRRFVLTRLSRESGRPVDQMTTVLDLAGMGMRHMSKEAVSYTRRISDIF
QDNYSGMTCKLLVVNAPWVFSKGWQIIEGFLSEDTIAKVKVLGKGEEGLK
ELERYIPRENIPEFLGGESHAVIGPTDPLWVEVDSAMRAWVQGEDPFLDR
GDVRQVAARIGRERSAAAAAAAAAAAELKEEEAVAVGGVETVTAIPGSTT
KKGQGERRTPAEGFLDREGGVFGVEQGLEEVAAAAVAARKGGAEGEGEYE
GGSLAQEKTGEEREEVRVGGSKARRKADPGRRRGREGGAHRRRLHEVLHN
AETDGSGSSSRRKSKPKVRLSVVREEGLDALSMRRRRRKREDAARENEKE
AVAEEAVSEEGVGGTREGNGEVDRGAARGIRERVVGVLLGGLVPILTAVF
AEVVSAMLAAAKVLLSAAEDLLRFLRDALFELVEVED*
back to top

mRNA from alignment at M-pyrifera_M_contig9577:3719..9327+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9577.22082.1 ID=mRNA_M-pyrifera_M_contig9577.22082.1|Name=mRNA_M-pyrifera_M_contig9577.22082.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5609bp|location=Sequence derived from alignment at M-pyrifera_M_contig9577:3719..9327+ (Macrocystis pyrifera P11B4 male)
GAGGACGAGGACGACAAATCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA GGAGGAGGAAGGGGAGGAAGCAGCGGCGATCCGAGAGCTCCTGAGCCAAA GGAACGCTCTCGACGTGGAGGTGCAGAAGGCGGCTGCGTTAGCCGTGGAC AACCTGCCCGCCGCCCAGCGAGAGTCCTTCGACGTCGTGAAGGTGTTTGC CTTTGGAGACCCCAGGGACGCAGAGAAAAAGGGGAGCCTGTCGGAGGAGG ACATTCGCGCGTTGGACACGGTGGCGATTTGCGGCGACCGCGACGGGGTG GTGCTGGCGTTCCTGAGGCACTCCAAGTTCGATGTGCCGAAGGCGAAGGA GTCTATACGCCGGTGCTGCGCTTGGAGGAGGGAACACGAGGTATGTGCAT ACTGCTACCTGGAACGGCGGTAAACATGCTGCAGACCTACTACAGAGAGG TATTGACACACGCGCACCTCTGGAACAGATCATGATCTATCTGATCTGTG CACTGTAGATGAACTAGTTCCTCACCTGCTGTTGTGACAAGTTGTGCAGG ATCTATCTGCCTTTTAGGACAGATCCAACCCAGGAAACATATGCTACTAC TGTACGTGGACCATCCAGATTATACGGCTCTCACTCGGCAACATGAGCTA GATCATACAGATCATATAGATCAGGAATACATCTGCCCTGAAAGATCTAG ATCATGTAGTGGGATTCGACGATGTGTCCGAGGTGTGCATGCTTGATACT TACCGGTGGCAAATGTCTACTCCCCCCTGTGATTTCACCGTTGGGGTGGC GAGCTGGCCGTTCGTTCCGTGTATATAGAAATCGGCTCTTTTTTTTCGAT GCCGATGTCGATTGAAATCGGTTCGATTGAAACGGATGGATCGGCTCCCG GTTCACAACCAGGGCACTCGAAAAAAAAAAAGTCCATGGCCAACACGACT TTTTTGTTTTTTGTTTTTAGTTTTCGGGTACGTAGGTACAAGTTAGTTTT TCTGGGGCGAAAAATGTCGCGTGTTCCGAGGAGGGGACGACGTCGAACGC GAAGACAAAGGTGTGCACATGAAGATAAACTTTAGCAACTCCCTAATTTT TCTTCTTAGGTCTGATTCCGAGTGTTTTGTCTCCAAAACAGGAGCGCGGT GGTACATATAAGACCGCTCTGAACGGAAATGAAAAGCACCGTTAGTTATT GACGTCTGTGCACGAAACGGCCCCTACATTTCCGTCACTACGAGTACGTA GCGGTATGTGATAAACCCTTTTATTAATAGTACCGCAGTCCCGTTTGGGG GACAGACTACTTGAAATTAGACTGCTTTGTCCCCAAAACGGAACTGCGAT CCTCGAAAGGGTCAACCCCCTCTTCTATTGCAAATATGATGCTACTCTAG TTCCAAGTAGTTTTTCATCCAAAAGTGGGTTCAGTTTTACCGGTCGCCGA CATAATGTGAGCTGCTAACCCCTTGGAAACCTGGGATTGTAGCGGCCAAA ACAATCATGGTTTTGGTGTTGTGTGTCAACCGTCTACGAGTACGAGTACG AGTACGAGCACGAGCGCCCGGCAGTACTAGTTACGGGGGAACATGGTAAT CAGGACCAAATATGCCTACTGTAGTAAAAATACTGGAACATGTAGATTTT TTGTGTATGATGGGTCTTAATTACTGTGGTCTCCCCGTAATATTAATAGT AGGATCATGCTTCGCCCGTGTCGTGCGGACTTCTCGCTTTGTAACTCGGG CACTGCTTTCTAGGCTTTACTATCATCCCCCGGTCACGCAGTGTGGCCGT CGTCGTGGCCACGTTTTGTCGGCGATTTTCCCCCCTGAAGTCCCGAAGGC GCTAATGGGTCCTCCGCAATACTGTAGAAAGCCTATTCTTGCGTTTTTGT TTGTGTGTTTGTCGTTTTTTCCTGGCTATATTCATTTCGGGACCCATGTT AAGCAACCGGAACAGGAAGGGCGGATGCGACATTCTTGGGGGGGGGGGGG TGTAACGCCCGCGAGTCCATGATGGTAAAACCTGGACACGATACTCGCTC GTATTTGTCGCGGGAATAGCCATATATTCCATCTATGGGACTTGGTGTTG GTTAGGGCTAACGACCCCCCCCTTCTCCCCTGCCCCGCACCTTTCCTCCC CTCTCCCCTCTCCCCCCTCTCCCTCCCCCTCCCCCACCACCTCCTTCCCC CTCCCCTCCCTTCCCCCGCTGTCCCCTCCCCTCTACTCCCACCCCCCCCC TTCACTCCCGCCTTACTACTCCCTAACAACGGCGGCAATGACAATATATA TTATCACAGGCGGGCATATTTGACCGCGCCGTCGCCCCCGCAAAGATGCA CAAGCACCGCACCCACTGGCCAACGGGTTTCCACAAGCAGGATTGCGCTG GGAGACCGGTGTTCTACGATCGCGTCGGCCTGTCCGACCTCTCAGCCCTG CGTGCAGAACCCGACGGCCTGGACCAAGACGAGATGGTCCAGATTTTCTG CCAGAATATGGAAGTGAGTGGCTGCAGGGGAGATGGGGAAGGGGATGAGG GAGAAAGCGAGGGGGGGGGTGTATTCATGACACGCATAGCCGTAGTTGTA TGGCCATAAACCATAGACCCTCGGGGGGGCGAGGGGGAGGGGAAGGGGGA GGAGGGGAAGAGGAGGGAGGGGGGAGGGGGAAGGGAGAGGGAGAGGATGT GGGTGGAGGCGACAGGGAGAGGGGGCTACCGTAGCGGCAGACGGTTGGTG TGGGTGACTTTTATTAGCTGTGCTGGTGGTGGGGAGGCCGGCGGGTGGGG GCGAGGAAGCGTTGGGGGAAAAAGGGTGCGGTTTCCTTTTTTTCTGTCGC TTCTTTTCTGTTTTCTCGTGTTTCTGTGTTTTTTTGTGTTTGTGTTTCTC GGTGTGTCTTTCGGCCTGTCCGTGTGTGCTTGTTGTGCGTGTCGTCCTGT TTTGCGTCGTTGCGGGACCAATCAACTGCAGGGCGTCACACACTTACTTT TGCACCTTGCTGACGCTGCCGTCACGTATCAACACGCGATTCCGAAATTG GCCGCGTTCCGCGTTGTCACCCCATCCCCACCCCCCTCCGCCCCCAGACG GGTTTCCAAAATATATTGGCTTTTGTTTCGGGTGCGCCGTGGCTTCGTGC TGACGCGGCTCGGCTTCGCCCCCTCCACGAGCCCTAATTTACCGCGTTAT CACCCCCCCCCGACGGGTTTTGCAAAATGTGTTGGCATTCTTGTTTCAGA TGCGCCGTCGCTTCGTGCTGACGCGGCTTAGCCGCGAGTCCGGCCGGCCG GTGGACCAGATGACGACTGTATTGGACCTGGCAGGAATGGGTATGCGGCA CATGAGCAAGGAGGCTGTCTCGTACACGCGGCGCATCAGCGATATTTTTC AGGACAACTACTCCGGCATGACCTGCAAGCTGCTCGTCGTGAATGCTCCC TGGGTGTTCAGCAAGGGGTGGCAGATCATCGAAGGTGTGTATGTGTGTGT GTGTGTGTGTGGGGGGGGGGGGGGTCCTCTTCTTTTGCTTGCCTTTATTT GTTTGACCATTGTCTACGCATCGCTTTCGAGACGGGGGTGGAGGGGGGAT ATGTGGGGCAGGACGAGGGCGATTGTGGGGCTGTTGGTGTATAGCCTTCC GTGTAGGCTTGTTGGGACCCAAACTACCACGTAATGATATATGGTATGTT TTGGCTATTTTGAGGTATCGACAGCCCACCCTAGCCCCCGCCCCTGCCCC TGCTCCCCTCCGAAGGACGGTCATATTATTTTGATTCGTTCATCTCGTTC AATGCATGTCGTTCGTTGAAGTTCTTCAACTCATGCCCTTCATTATTTCA TTTATCACTCGTTTCGTCCGTCGCATCCTCTTATGTTCGTTCACCTCATT CATATTGATATTCATACAGTCAAAATACCACTATTCACTTATTGGGGTAT GGGACACTTACAGTCACCTCAATCTCCACATGAACACAATTAAGTCATGT ACGAACAGGTATTAATAGTACGAATCAGAGCAAAACACTTCGTTCAGGTA TTTTGTCGGACAATTTCCATCTCGTCCCTCTCGTTCGTTCCATCCACGTT TTCTGTGTTGTCCAAAACTTTTGGGCGGGCGTTTTGAAGCGACGACACGG CAGTGGCCAAAGTAAAGGACCTTGGGTTCATACAGTTCATGAATTCAATC TGGTTCCTCTCATTCGTTCGTCTGACCCACTCCATCGACAACAATTTCCC ATAATATGGTCAGGCTTTCTGAACAAGGATACAGTGACCGAAGTAAAAAT CCCCGCGTTCATATAGTCAACACCTCCAAGCCCATTCCTCTCATTCGTCT ATCTAATCCACCCCATCCACAATACCACGATTTTCCTTAACATTGGCAGG CTTTTTGAGCGAAATTCGTATAGTTCCTACTAAATCCCTTTTGGCTCATC TCCCTTGTCCGTACACCACATACTTTTTTTCCACCACCCCCGTCCACACT TTTCCTATACATGTTGCATAACCTTGGCAGGCTTTTTGAGCGAGGACACA ATAGCCAAGGTGAAGGTCCTCGGGAAGGGAGAGGAAGGCCTGAAAGAGCT CGAGCGATACATCCCCAGGGAGAATATCCCCGAGTTTCTCGGCGGAGAAT CGCACGCCGTCATCGGACCGACAGACCCCCTCTGGGTGGAAGTCGACAGC GCAATGCGCGCGTGGGTGCAAGGGGAAGACCCCTTCCTTGACCGGGGTGA CGTGCGCCAAGTGGCCGCTCGTATCGGGCGAGAGCGGTCGGCGGCGGCGG CGGCGGCGGCGGCAGCGGCAGCGGAGTTGAAAGAAGAGGAGGCGGTGGCG GTGGGGGGTGTGGAAACGGTTACCGCTATACCGGGTTCGACGACGAAGAA AGGACAGGGTGAACGAAGGACGCCGGCGGAAGGGTTTCTCGACCGGGAAG GCGGTGTCTTTGGGGTGGAGCAGGGGCTGGAGGAGGTGGCGGCGGCGGCG GTAGCAGCGCGGAAGGGGGGTGCGGAGGGGGAGGGGGAGTACGAGGGCGG AAGTTTAGCGCAGGAGAAGACTGGCGAGGAGCGGGAAGAGGTGAGGGTGG GGGGGAGCAAGGCTCGGCGAAAAGCCGACCCCGGCAGGCGCAGAGGTCGG GAGGGGGGGGCGCACCGTCGCCGGCTCCACGAGGTGCTCCACAACGCGGA AACAGACGGCTCCGGCTCCTCCTCCCGCCGGAAATCGAAGCCGAAGGTTA GGCTTAGCGTCGTGCGCGAGGAGGGCTTGGATGCCCTCTCCATGCGACGG CGGCGGCGGAAAAGAGAGGACGCAGCGCGGGAAAACGAAAAGGAGGCGGT AGCGGAAGAGGCGGTATCGGAAGAGGGGGTGGGGGGGACGCGGGAGGGGA ATGGGGAGGTGGACCGAGGAGCAGCGAGGGGTATAAGGGAGCGCGTGGTT GGGGTCCTGCTGGGCGGCCTGGTTCCGATTTTGACTGCGGTCTTTGCGGA GGTTGTGAGCGCGATGCTGGCGGCCGCGAAGGTCCTGCTCAGCGCCGCGG AGGACTTGCTTCGGTTTTTGCGAGACGCGCTTTTCGAGCTGGTCGAGGTC GAAGATTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig9577:3719..9327+

>mRNA_M-pyrifera_M_contig9577.22082.1 ID=mRNA_M-pyrifera_M_contig9577.22082.1|Name=mRNA_M-pyrifera_M_contig9577.22082.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2628bp|location=Sequence derived from alignment at M-pyrifera_M_contig9577:3719..9327+ (Macrocystis pyrifera P11B4 male)
ATGCGCCGTCGCTTCGTGCTGACGCGGCTTAGCCGCGAGTCCGGCCGGCC
GGTGGACCAGATGACGACTGTATTGGACCTGGCAGGAATGGGTATGCGGC
ACATGAGCAAGGAGGCTGTCTCGTACACGCGGCGCATCAGCGATATTTTT
CAGGACAACTACTCCGGCATGACCTGCAAGCTGCTCGTCGTGAATGCTCC
CTGGGTGTTCAGCAAGGGGTGGCAGATCATCGAAGATGCGCCGTCGCTTC
GTGCTGACGCGGCTTAGCCGCGAGTCCGGCCGGCCGGTGGACCAGATGAC
GACTGTATTGGACCTGGCAGGAATGGGTATGCGGCACATGAGCAAGGAGG
CTGTCTCGTACACGCGGCGCATCAGCGATATTTTTCAGGACAACTACTCC
GGCATGACCTGCAAGCTGCTCGTCGTGAATGCTCCCTGGGTGTTCAGCAA
GGGGTGGCAGATCATCGAAGGCTTTTTGAGCGAGGACACAATAGCCAAGG
TGAAGGTCCTCGGGAAGGGAGAGGAAGGCCTGAAAGAGCTCGAGCGATAC
ATCCCCAGGGAGAATATCCCCGAGTTTCTCGGCGGAGAATCGCACGCCGT
CATCGGACCGACAGACCCCCTCTGGGTGGAAGTCGACAGCGCAATGCGCG
CGTGGGTGCAAGGGGAAGACCCCTTCCTTGACCGGGGTGACGTGCGCCAA
GTGGCCGCTCGTATCGGGCGAGAGCGGTCGGCGGCGGCGGCGGCGGCGGC
GGCAGCGGCAGCGGAGTTGAAAGAAGAGGAGGCGGTGGCGGTGGGGGGTG
TGGAAACGGTTACCGCTATACCGGGTTCGACGACGAAGAAAGGACAGGGT
GAACGAAGGACGCCGGCGGAAGGGTTTCTCGACCGGGAAGGCGGTGTCTT
TGGGGTGGAGCAGGGGCTGGAGGAGGTGGCGGCGGCGGCGGTAGCAGCGC
GGAAGGGGGGTGCGGAGGGGGAGGGGGAGTACGAGGGCGGAAGTTTAGCG
CAGGAGAAGACTGGCGAGGAGCGGGAAGAGGTGAGGGTGGGGGGGAGCAA
GGCTCGGCGAAAAGCCGACCCCGGCAGGCGCAGAGGTCGGGAGGGGGGGG
CGCACCGTCGCCGGCTCCACGAGGTGCTCCACAACGCGGAAACAGACGGC
TCCGGCTCCTCCTCCCGCCGGAAATCGAAGCCGAAGGTTAGGCTTAGCGT
CGTGCGCGAGGAGGGCTTGGATGCCCTCTCCATGCGACGGCGGCGGCGGA
AAAGAGAGGACGCAGCGCGGGAAAACGAAAAGGAGGCGGTAGCGGAAGAG
GCGGTATCGGAAGAGGGGGTGGGGGGGACGCGGGAGGGGAATGGGGAGGT
GGACCGAGGAGCAGCGAGGGGTATAAGGGAGCGCGTGGTTGGGGTCCTGC
TGGGCGGCCTGGTTCCGATTTTGACTGCGGTCTTTGCGGAGGTTGTGAGC
GCGATGCTGGCGGCCGCGAAGGTCCTGCTCAGCGCCGCGGAGGACTTGCT
TCGGTTTTTGCGAGACGCGCTTTTCGAGCTGGTCGAGGTCGAAGATTAGG
CTTTTTGAGCGAGGACACAATAGCCAAGGTGAAGGTCCTCGGGAAGGGAG
AGGAAGGCCTGAAAGAGCTCGAGCGATACATCCCCAGGGAGAATATCCCC
GAGTTTCTCGGCGGAGAATCGCACGCCGTCATCGGACCGACAGACCCCCT
CTGGGTGGAAGTCGACAGCGCAATGCGCGCGTGGGTGCAAGGGGAAGACC
CCTTCCTTGACCGGGGTGACGTGCGCCAAGTGGCCGCTCGTATCGGGCGA
GAGCGGTCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCAGCGGAGTTGAA
AGAAGAGGAGGCGGTGGCGGTGGGGGGTGTGGAAACGGTTACCGCTATAC
CGGGTTCGACGACGAAGAAAGGACAGGGTGAACGAAGGACGCCGGCGGAA
GGGTTTCTCGACCGGGAAGGCGGTGTCTTTGGGGTGGAGCAGGGGCTGGA
GGAGGTGGCGGCGGCGGCGGTAGCAGCGCGGAAGGGGGGTGCGGAGGGGG
AGGGGGAGTACGAGGGCGGAAGTTTAGCGCAGGAGAAGACTGGCGAGGAG
CGGGAAGAGGTGAGGGTGGGGGGGAGCAAGGCTCGGCGAAAAGCCGACCC
CGGCAGGCGCAGAGGTCGGGAGGGGGGGGCGCACCGTCGCCGGCTCCACG
AGGTGCTCCACAACGCGGAAACAGACGGCTCCGGCTCCTCCTCCCGCCGG
AAATCGAAGCCGAAGGTTAGGCTTAGCGTCGTGCGCGAGGAGGGCTTGGA
TGCCCTCTCCATGCGACGGCGGCGGCGGAAAAGAGAGGACGCAGCGCGGG
AAAACGAAAAGGAGGCGGTAGCGGAAGAGGCGGTATCGGAAGAGGGGGTG
GGGGGGACGCGGGAGGGGAATGGGGAGGTGGACCGAGGAGCAGCGAGGGG
TATAAGGGAGCGCGTGGTTGGGGTCCTGCTGGGCGGCCTGGTTCCGATTT
TGACTGCGGTCTTTGCGGAGGTTGTGAGCGCGATGCTGGCGGCCGCGAAG
GTCCTGCTCAGCGCCGCGGAGGACTTGCTTCGGTTTTTGCGAGACGCGCT
TTTCGAGCTGGTCGAGGTCGAAGATTAG
back to top