mRNA_M-pyrifera_M_contig95721.22074.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95721.22074.1
Unique NamemRNA_M-pyrifera_M_contig95721.22074.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig95721.22074.1 vs. uniprot
Match: A0A7C1X2Z8_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C1X2Z8_9BACT)

HSP 1 Score: 105 bits (263), Expect = 1.610e-26
Identity = 51/71 (71.83%), Postives = 58/71 (81.69%), Query Frame = 1
Query:   13 PGLDPELLDQLPAFELFFKTFGFKRVHGRVWGLLVLSELPLSSKEVSQALSISTGLTSTTINELVEWGALR 225
            PG++  LL +LP FELFFKTFGFKRVHGRVWGLLVLS  PL+SKE+S  L IS   TSTT+NEL EWGA+R
Sbjct:   29 PGVEEALLAELPTFELFFKTFGFKRVHGRVWGLLVLSSEPLASKEISGQLGISQAATSTTLNELAEWGAVR 99          
BLAST of mRNA_M-pyrifera_M_contig95721.22074.1 vs. uniprot
Match: A0A7C8CWI6_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C8CWI6_9BACT)

HSP 1 Score: 103 bits (258), Expect = 7.540e-26
Identity = 49/70 (70.00%), Postives = 58/70 (82.86%), Query Frame = 1
Query:   16 GLDPELLDQLPAFELFFKTFGFKRVHGRVWGLLVLSELPLSSKEVSQALSISTGLTSTTINELVEWGALR 225
            GLD  L++QLP FELFFKTFGFKR+HGRVWGLLVLS  PLSSKE++ +L IS G TS  ++EL EWGA+R
Sbjct:   19 GLDERLMEQLPTFELFFKTFGFKRIHGRVWGLLVLSPGPLSSKEIASSLGISQGSTSACLSELSEWGAIR 88          
BLAST of mRNA_M-pyrifera_M_contig95721.22074.1 vs. uniprot
Match: A0A2D5AU76_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5AU76_9BACT)

HSP 1 Score: 103 bits (257), Expect = 1.110e-25
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = 1
Query:    1 AELVPGLDPELLDQLPAFELFFKTFGFKRVHGRVWGLLVLSELPLSSKEVSQALSISTGLTSTTINELVEWGALR 225
            A  +P ++ +LL +LP FELFFKTFGFKRVHGR+WGLLVL+  PLSSKE+   L +S G TS+T+NEL EWGA+R
Sbjct:   10 AATMPLVEEQLLSELPTFELFFKTFGFKRVHGRIWGLLVLAAQPLSSKEIGGLLELSVGSTSSTLNELAEWGAIR 84          
BLAST of mRNA_M-pyrifera_M_contig95721.22074.1 vs. uniprot
Match: A0A7Y5PWT3_9PLAN (HTH marR-type domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7Y5PWT3_9PLAN)

HSP 1 Score: 103 bits (256), Expect = 2.340e-25
Identity = 46/71 (64.79%), Postives = 58/71 (81.69%), Query Frame = 1
Query:   10 VPGLDPELLDQLPAFELFFKTFGFKRVHGRVWGLLVLSELPLSSKEVSQALSISTGLTSTTINELVEWGAL 222
            VPGL+PEL  QLP FELFFKT GFKR+HGR+WGLLVL+  P+++KE+ + L +S G TST +NEL EWGA+
Sbjct:   16 VPGLEPELAAQLPQFELFFKTIGFKRLHGRIWGLLVLTGRPMTAKEICEGLHLSQGATSTALNELTEWGAI 86          
BLAST of mRNA_M-pyrifera_M_contig95721.22074.1 vs. uniprot
Match: A0A800MG23_9BACT (Uncharacterized protein n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800MG23_9BACT)

HSP 1 Score: 102 bits (253), Expect = 4.490e-25
Identity = 46/73 (63.01%), Postives = 61/73 (83.56%), Query Frame = 1
Query:    4 ELVPGLDPELLDQLPAFELFFKTFGFKRVHGRVWGLLVLSELPLSSKEVSQALSISTGLTSTTINELVEWGAL 222
            ELVP L P+L  +LPAFE FFK FGFK++HGR+WGLLVL+  P+SSKE++  L+IS+G TSTT+ EL++WGA+
Sbjct:   11 ELVPFLAPDLAAELPAFEAFFKAFGFKQIHGRIWGLLVLAGKPMSSKEIAAELAISSGATSTTLKELIDWGAV 83          
BLAST of mRNA_M-pyrifera_M_contig95721.22074.1 vs. uniprot
Match: A0A7Y4STM8_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7Y4STM8_9BACT)

HSP 1 Score: 102 bits (254), Expect = 5.130e-25
Identity = 49/71 (69.01%), Postives = 58/71 (81.69%), Query Frame = 1
Query:   13 PGLDPELLDQLPAFELFFKTFGFKRVHGRVWGLLVLSELPLSSKEVSQALSISTGLTSTTINELVEWGALR 225
            P +DPELL +LP FELFFKTFGFKRVHGRVWGLLVL+  PLSSK++ Q+LS+S   TS  + EL EWGA+R
Sbjct:   21 PVVDPELLAELPTFELFFKTFGFKRVHGRVWGLLVLASEPLSSKDICQSLSLSQAATSGVVAELGEWGAIR 91          
BLAST of mRNA_M-pyrifera_M_contig95721.22074.1 vs. uniprot
Match: A0A2D5WAN6_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5WAN6_9BACT)

HSP 1 Score: 100 bits (250), Expect = 1.620e-24
Identity = 46/69 (66.67%), Postives = 58/69 (84.06%), Query Frame = 1
Query:   16 GLDPELLDQLPAFELFFKTFGFKRVHGRVWGLLVLSELPLSSKEVSQALSISTGLTSTTINELVEWGAL 222
            GLD  L +QLP FELFFKTFGFKR+HGR+WGLLVL+  PL+S+++S+ALSIS G TST++ EL EWG +
Sbjct:   23 GLDAPLAEQLPTFELFFKTFGFKRLHGRIWGLLVLAGQPLASRDISEALSISQGSTSTSLTELAEWGMI 91          
BLAST of mRNA_M-pyrifera_M_contig95721.22074.1 vs. uniprot
Match: A0A2E6D509_9BACT (Uncharacterized protein n=4 Tax=cellular organisms TaxID=131567 RepID=A0A2E6D509_9BACT)

HSP 1 Score: 99.8 bits (247), Expect = 2.670e-24
Identity = 48/71 (67.61%), Postives = 58/71 (81.69%), Query Frame = 1
Query:   10 VPGLDPELLDQLPAFELFFKTFGFKRVHGRVWGLLVLSELPLSSKEVSQALSISTGLTSTTINELVEWGAL 222
            VP LD EL  +LP FE+FFKTFGF+R+ GRVWGLLVLS+ PLSSKE++  L+IS G TST +NEL EWGA+
Sbjct:   22 VPVLDAELRAELPTFEVFFKTFGFRRILGRVWGLLVLSDRPLSSKEIAVELAISQGATSTAVNELSEWGAI 92          
BLAST of mRNA_M-pyrifera_M_contig95721.22074.1 vs. uniprot
Match: A0A518BIC6_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Pla133 TaxID=2528011 RepID=A0A518BIC6_9BACT)

HSP 1 Score: 100 bits (248), Expect = 2.840e-24
Identity = 48/68 (70.59%), Postives = 56/68 (82.35%), Query Frame = 1
Query:   19 LDPELLDQLPAFELFFKTFGFKRVHGRVWGLLVLSELPLSSKEVSQALSISTGLTSTTINELVEWGAL 222
            LDPEL  +LPAFE FFKTFGFKRVHGRVWGLLVLSE  LS+K++ + + IS G  STT+ ELVEWGA+
Sbjct:   19 LDPELAAELPAFEQFFKTFGFKRVHGRVWGLLVLSEQHLSAKDICEQIEISQGAASTTLGELVEWGAV 86          
BLAST of mRNA_M-pyrifera_M_contig95721.22074.1 vs. uniprot
Match: A0A518EVF4_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EVF4_9BACT)

HSP 1 Score: 97.4 bits (241), Expect = 4.520e-23
Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = 1
Query:   16 GLDPELLDQLPAFELFFKTFGFKRVHGRVWGLLVLSELPLSSKEVSQALSISTGLTSTTINELVEWGAL 222
            GL+ EL  +L  FE FFKTFGFKR+HGRVWGLLVLS  PL++KE+ Q L IS G  STTINEL+EWGA+
Sbjct:   52 GLEEELHGELATFEAFFKTFGFKRIHGRVWGLLVLSGQPLTAKEIVQELKISQGAASTTINELLEWGAV 120          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95721.22074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C1X2Z8_9BACT1.610e-2671.83Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7C8CWI6_9BACT7.540e-2670.00Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2D5AU76_9BACT1.110e-2564.00Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7Y5PWT3_9PLAN2.340e-2564.79HTH marR-type domain-containing protein n=1 Tax=Pl... [more]
A0A800MG23_9BACT4.490e-2563.01Uncharacterized protein n=2 Tax=Planctomycetes bac... [more]
A0A7Y4STM8_9BACT5.130e-2569.01Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2D5WAN6_9BACT1.620e-2466.67Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2E6D509_9BACT2.670e-2467.61Uncharacterized protein n=4 Tax=cellular organisms... [more]
A0A518BIC6_9BACT2.840e-2470.59Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A518EVF4_9BACT4.520e-2368.12Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95721contigM-pyrifera_M_contig95721:502..726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.5
Seed ortholog evalue4e-07
Seed eggNOG ortholog862908.BMS_1445
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of RNA biosynthetic process
EggNOG OGsCOG1510@1,COG1510@2
COG Functional cat.K
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816872.152638-CDS-M-pyrifera_M_contig95721:501..7261622816872.152638-CDS-M-pyrifera_M_contig95721:501..726Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95721 502..726 +
1692278228.1463099-CDS-M-pyrifera_M_contig95721:501..7261692278228.1463099-CDS-M-pyrifera_M_contig95721:501..726Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95721 502..726 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95721.22074.1prot_M-pyrifera_M_contig95721.22074.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95721 502..726 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95721.22074.1

>prot_M-pyrifera_M_contig95721.22074.1 ID=prot_M-pyrifera_M_contig95721.22074.1|Name=mRNA_M-pyrifera_M_contig95721.22074.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
AELVPGLDPELLDQLPAFELFFKTFGFKRVHGRVWGLLVLSELPLSSKEV
SQALSISTGLTSTTINELVEWGALR
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mRNA from alignment at M-pyrifera_M_contig95721:502..726+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95721.22074.1 ID=mRNA_M-pyrifera_M_contig95721.22074.1|Name=mRNA_M-pyrifera_M_contig95721.22074.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=225bp|location=Sequence derived from alignment at M-pyrifera_M_contig95721:502..726+ (Macrocystis pyrifera P11B4 male)
GCCGAGCTCGTCCCCGGCCTCGACCCCGAGCTGCTCGACCAGCTGCCCGC CTTCGAGCTGTTCTTCAAGACCTTCGGCTTCAAGCGCGTCCACGGCCGGG TCTGGGGCCTGCTCGTGCTCAGCGAGCTGCCGCTGTCGAGCAAGGAGGTC AGCCAAGCGCTGTCGATCTCGACCGGCCTGACGAGCACCACGATCAACGA GCTGGTCGAGTGGGGCGCGCTGCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95721:502..726+

>mRNA_M-pyrifera_M_contig95721.22074.1 ID=mRNA_M-pyrifera_M_contig95721.22074.1|Name=mRNA_M-pyrifera_M_contig95721.22074.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig95721:502..726+ (Macrocystis pyrifera P11B4 male)
GCCGAGCTCGTCCCCGGCCTCGACCCCGAGCTGCTCGACCAGCTGCCCGC
CTTCGAGCTGTTCTTCAAGACCTTCGGCTTCAAGCGCGTCCACGGCCGGG
TCTGGGGCCTGCTCGTGCTCAGCGAGCTGCCGCTGTCGAGCAAGGAGGTC
AGCCAAGCGCTGTCGATCTCGACCGGCCTGACGAGCACCACGATCAACGA
GCTGGTCGAGTGGGGCGCGCTGCGCGCCGAGCTCGTCCCCGGCCTCGACC
CCGAGCTGCTCGACCAGCTGCCCGCCTTCGAGCTGTTCTTCAAGACCTTC
GGCTTCAAGCGCGTCCACGGCCGGGTCTGGGGCCTGCTCGTGCTCAGCGA
GCTGCCGCTGTCGAGCAAGGAGGTCAGCCAAGCGCTGTCGATCTCGACCG
GCCTGACGAGCACCACGATCAACGAGCTGGTCGAGTGGGGCGCGCTGCGC
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