mRNA_M-pyrifera_M_contig95712.22073.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95712.22073.1
Unique NamemRNA_M-pyrifera_M_contig95712.22073.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig95712.22073.1 vs. uniprot
Match: D8TKH5_VOLCA (Acetylglucosaminyltransferase n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TKH5_VOLCA)

HSP 1 Score: 58.5 bits (140), Expect = 3.660e-8
Identity = 28/73 (38.36%), Postives = 38/73 (52.05%), Query Frame = 1 
Query:    1 GFCSLNYPASSCECMRDARSAQ--GHCYPQLCPNDCSGHGECSQMVLECVCDDGYAAPDCRKPIARRPLEEYL 213
            G+C+ N P   C C+ D  S +        +CPN CSGHGEC      C C DG+   DC + ++ +PLE  L
Sbjct:  265 GWCNSNKPDIRCGCLFDGFSGELCDEVTETMCPNQCSGHGECDSGF--CKCHDGWYGTDCARKVSGQPLEPGL 335
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BLAST of mRNA_M-pyrifera_M_contig95712.22073.1 vs. uniprot
Match: A0A7S0X0K6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0X0K6_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 1.860e-7
Identity = 29/81 (35.80%), Postives = 40/81 (49.38%), Query Frame = 1 
Query:    1 GFCSLNYPASSCECMRDARSAQ--GHCYPQLCPNDCSGHGECSQMVLECVCDDGYAAPDCRKPIARRPLEEYLTTSITPLG 237
            G+C+  +P   C C  D    +     + Q+CP+ CSGHGEC  M+  C C DG+   DC +  A  PLE  +    T  G
Sbjct:   50 GWCTAQHPQYGCGCYIDGYHGELCDKRHEQVCPSQCSGHGEC--MLGFCKCHDGWYGTDCARRKAGLPLEPGMQDPGTARG 128
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BLAST of mRNA_M-pyrifera_M_contig95712.22073.1 vs. uniprot
Match: A0A150GX58_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GX58_GONPE)

HSP 1 Score: 53.5 bits (127), Expect = 2.110e-6
Identity = 26/80 (32.50%), Postives = 40/80 (50.00%), Query Frame = 1 
Query:    1 GFCSLNYPASSCECMRDARSAQ--GHCYPQLCPNDCSGHGECSQMVLECVCDDGYAAPDCRKPIARRPLEE-YLTTSITP 231
            G+C+ + P   C C+ D  + +        +CPN CSGHGEC      C C  G+   DC + +A +P+E  +L +   P
Sbjct:  114 GWCNSDKPVVKCACLFDGFAGELCDEVTETVCPNQCSGHGECDSGF--CKCHAGWYGTDCARKVAGQPMEPGHLESKARP 191
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BLAST of mRNA_M-pyrifera_M_contig95712.22073.1 vs. uniprot
Match: A0A8J4CZP0_9CHLO (EGF-like domain-containing protein n=3 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CZP0_9CHLO)

HSP 1 Score: 53.5 bits (127), Expect = 2.130e-6
Identity = 25/73 (34.25%), Postives = 38/73 (52.05%), Query Frame = 1 
Query:    1 GFCSLNYPASSCECMRDARSAQ--GHCYPQLCPNDCSGHGECSQMVLECVCDDGYAAPDCRKPIARRPLEEYL 213
            G+C+ + P ++C C+ D  S          +CPN CSGHGEC      C C +G+   DC + +A + +E  L
Sbjct:  266 GWCNSDTPVTTCGCLFDGFSGPLCDEVTETMCPNQCSGHGECDSGF--CKCHEGWYGTDCARKVAGQHMEPGL 336
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BLAST of mRNA_M-pyrifera_M_contig95712.22073.1 vs. uniprot
Match: A0A7R9V4J3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V4J3_9CHLO)

HSP 1 Score: 51.2 bits (121), Expect = 6.150e-6
Identity = 26/66 (39.39%), Postives = 33/66 (50.00%), Query Frame = 1 
Query:    1 GFCSLNYPASSCECMRDARSAQGHC---YPQLCPNDCSGHGECSQMVLECVCDDGYAAPDCRKPIA 189
            G+C    P SSC C  D  +    C   Y  +CPN CSGHGEC   +  C C +G+   DC +  A
Sbjct:   49 GWCVAENPKSSCGCHLDGHAGPA-CELNYEMVCPNQCSGHGEC--WLGFCKCHEGWYGTDCMRKAA 111
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BLAST of mRNA_M-pyrifera_M_contig95712.22073.1 vs. uniprot
Match: A0A6P8IYM4_ACTTE (von Willebrand factor D and EGF domain-containing protein-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IYM4_ACTTE)

HSP 1 Score: 50.1 bits (118), Expect = 3.620e-5
Identity = 19/30 (63.33%), Postives = 22/30 (73.33%), Query Frame = 1 
Query:   85 LCPNDCSGHGECSQMVLECVCDDGYAAPDC 174
            LCPNDCSGHG CS     C+CD+G+ A DC
Sbjct:  796 LCPNDCSGHGNCSNRT--CICDEGFTAIDC 823
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95712.22073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8TKH5_VOLCA3.660e-838.36Acetylglucosaminyltransferase n=1 Tax=Volvox carte... [more]
A0A7S0X0K6_9CHLO1.860e-735.80Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A150GX58_GONPE2.110e-632.50Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A8J4CZP0_9CHLO2.130e-634.25EGF-like domain-containing protein n=3 Tax=Volvox ... [more]
A0A7R9V4J3_9CHLO6.150e-639.39Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A6P8IYM4_ACTTE3.620e-563.33von Willebrand factor D and EGF domain-containing ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95712contigM-pyrifera_M_contig95712:424..663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816872.1180086-CDS-M-pyrifera_M_contig95712:423..6631622816872.1180086-CDS-M-pyrifera_M_contig95712:423..663Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95712 424..663 -
1692278228.1348524-CDS-M-pyrifera_M_contig95712:423..6631692278228.1348524-CDS-M-pyrifera_M_contig95712:423..663Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95712 424..663 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95712.22073.1prot_M-pyrifera_M_contig95712.22073.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95712 424..663 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95712.22073.1

>prot_M-pyrifera_M_contig95712.22073.1 ID=prot_M-pyrifera_M_contig95712.22073.1|Name=mRNA_M-pyrifera_M_contig95712.22073.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
GFCSLNYPASSCECMRDARSAQGHCYPQLCPNDCSGHGECSQMVLECVCD
DGYAAPDCRKPIARRPLEEYLTTSITPLGN
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mRNA from alignment at M-pyrifera_M_contig95712:424..663-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95712.22073.1 ID=mRNA_M-pyrifera_M_contig95712.22073.1|Name=mRNA_M-pyrifera_M_contig95712.22073.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig95712:424..663- (Macrocystis pyrifera P11B4 male)
GGATTTTGCAGCCTTAACTACCCTGCGAGCTCCTGCGAATGCATGCGAGA
TGCTCGGTCTGCTCAGGGCCACTGCTATCCCCAACTATGCCCGAACGACT
GCTCTGGCCACGGTGAATGCTCTCAAATGGTGTTGGAATGCGTTTGTGAC
GATGGATACGCTGCCCCAGACTGCAGGAAACCGATTGCGAGGCGGCCATT
GGAAGAGTACCTTACCACATCCATTACGCCACTTGGAAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95712:424..663-

>mRNA_M-pyrifera_M_contig95712.22073.1 ID=mRNA_M-pyrifera_M_contig95712.22073.1|Name=mRNA_M-pyrifera_M_contig95712.22073.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig95712:424..663- (Macrocystis pyrifera P11B4 male)
GGATTTTGCAGCCTTAACTACCCTGCGAGCTCCTGCGAATGCATGCGAGA
TGCTCGGTCTGCTCAGGGCCACTGCTATCCCCAACTATGCCCGAACGACT
GCTCTGGCCACGGTGAATGCTCTCAAATGGTGTTGGAATGCGTTTGTGAC
GATGGATACGCTGCCCCAGACTGCAGGAAACCGATTGCGAGGCGGCCATT
GGAAGAGTACCTTACCACATCCATTACGCCACTTGGAAACGGATTTTGCA
GCCTTAACTACCCTGCGAGCTCCTGCGAATGCATGCGAGATGCTCGGTCT
GCTCAGGGCCACTGCTATCCCCAACTATGCCCGAACGACTGCTCTGGCCA
CGGTGAATGCTCTCAAATGGTGTTGGAATGCGTTTGTGACGATGGATACG
CTGCCCCAGACTGCAGGAAACCGATTGCGAGGCGGCCATTGGAAGAGTAC
CTTACCACATCCATTACGCCACTTGGAAAC
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