mRNA_M-pyrifera_M_contig95710.22072.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95710.22072.1
Unique NamemRNA_M-pyrifera_M_contig95710.22072.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig95710.22072.1 vs. uniprot
Match: A0A7S4I9A1_9EUKA (Phospholipase D n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I9A1_9EUKA)

HSP 1 Score: 110 bits (274), Expect = 7.720e-26
Identity = 54/100 (54.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:   13 SPRGGVHNFRMSLWAEHTNVSIPEFLAPETLECVSEIHRISDSNWKQFMADEITDMESHLMPYPIKVDKKGAVSARVKYFPDTKAPVTGTSSLTMPDNLT 312
            +PRGGVH FRMSLW+EH   S  EFL P + +CV +I  I + NW+ F   ++ +M+SHLM YPI+ +    V A  ++FPDTKAPV G SSLTMPD LT
Sbjct:  841 NPRGGVHKFRMSLWSEHVGASHTEFLHPNSPDCVKKITEICERNWETFAGPDVVNMKSHLMRYPIRWNGNTIV-AEPEHFPDTKAPVMGKSSLTMPDLLT 939          
BLAST of mRNA_M-pyrifera_M_contig95710.22072.1 vs. uniprot
Match: A0A388JWQ7_CHABU (Phospholipase D n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JWQ7_CHABU)

HSP 1 Score: 110 bits (274), Expect = 7.780e-26
Identity = 53/103 (51.46%), Postives = 71/103 (68.93%), Query Frame = 1
Query:   13 SPRGGVHNFRMSLWAEHTNVSIPEFLAPETLECVSEIHRISDSNWKQFMADEITDMESHLMPYPIKVDKKGAVSAR--VKYFPDTKAPVTGTSSLTMPDNLTT 315
            +P+G VH FRMSLWAEH      EF AP T +CV ++  +++ NW+ ++  E  DM +HLMPYP++VDK G VSAR   ++FPD+KA VTGT  +  PD LTT
Sbjct: 1009 APKGAVHGFRMSLWAEHLGSVDKEFSAPWTSKCVRKVREMAERNWQLYVQPEPVDMVAHLMPYPLQVDKSGRVSARPGFEFFPDSKAKVTGTVLMQFPDLLTT 1111          
BLAST of mRNA_M-pyrifera_M_contig95710.22072.1 vs. uniprot
Match: A0A388JWR0_CHABU (Phospholipase D n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JWR0_CHABU)

HSP 1 Score: 107 bits (268), Expect = 4.960e-25
Identity = 51/102 (50.00%), Postives = 70/102 (68.63%), Query Frame = 1
Query:   16 PRGGVHNFRMSLWAEHTNVSIPEFLAPETLECVSEIHRISDSNWKQFMADEITDMESHLMPYPIKVDKKGAVSARVKY--FPDTKAPVTGTSSLTMPDNLTT 315
            P+G VH FRMSLWAEH      EFL+P  ++CV ++  +++ NW+ ++  E  DM +HLMPYP++VDK G VSAR  +  FPD+KA V GT+ +  PD LTT
Sbjct:  788 PKGAVHGFRMSLWAEHLGSVEKEFLSPWKVKCVRKVQEMAERNWQLYVQSEPVDMVAHLMPYPLEVDKTGKVSARPGFECFPDSKAKVVGTTLMAFPDILTT 889          
BLAST of mRNA_M-pyrifera_M_contig95710.22072.1 vs. uniprot
Match: UPI000B8D1A10 (phospholipase D beta 1-like n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8D1A10)

HSP 1 Score: 105 bits (263), Expect = 1.650e-24
Identity = 53/106 (50.00%), Postives = 68/106 (64.15%), Query Frame = 1
Query:    1 RGQPSPRGGVHNFRMSLWAEHTNVSIPEFLAPETLECVSEIHRISDSNWKQFMADEITDMESHLMPYPIKVDKKGAVSARVKY--FPDTKAPVTGTSSLTMPDNLT 312
            R Q SP G +H +RMSLWAEHT      F  PE+LECV ++  I D NWKQF A+E+T+M  HLM YP++VD+KG V    K+  FPD    + G S L + +NLT
Sbjct:  408 RKQSSPNGQIHGYRMSLWAEHTGGIEDCFTQPESLECVRKVRSIGDMNWKQFAAEEVTEMRGHLMNYPVEVDRKGKVRPLPKFETFPDVGGNIVG-SFLAIQENLT 512          
BLAST of mRNA_M-pyrifera_M_contig95710.22072.1 vs. uniprot
Match: A0A1S3TT58_VIGRR (Phospholipase D n=6 Tax=Vigna TaxID=3913 RepID=A0A1S3TT58_VIGRR)

HSP 1 Score: 105 bits (262), Expect = 3.240e-24
Identity = 52/106 (49.06%), Postives = 68/106 (64.15%), Query Frame = 1
Query:    1 RGQPSPRGGVHNFRMSLWAEHTNVSIPEFLAPETLECVSEIHRISDSNWKQFMADEITDMESHLMPYPIKVDKKGAVSARV--KYFPDTKAPVTGTSSLTMPDNLT 312
            + Q  P G +H +RMSLWAEHT      FL PE+LECVS I  + + NWKQF ADE+T+M  HL+ YP++VD+KG V +    + FPD    + G S L M +NLT
Sbjct:  995 KAQTYPHGQIHGYRMSLWAEHTGTIEDCFLQPESLECVSRIRAMGEMNWKQFAADEVTEMRGHLLKYPVEVDRKGKVRSLPDQEEFPDVGGKIVG-SFLAMKENLT 1099          
BLAST of mRNA_M-pyrifera_M_contig95710.22072.1 vs. uniprot
Match: A0A388LVH4_CHABU (Phospholipase D n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LVH4_CHABU)

HSP 1 Score: 105 bits (261), Expect = 4.420e-24
Identity = 54/104 (51.92%), Postives = 70/104 (67.31%), Query Frame = 1
Query:   16 PRGGVHNFRMSLWAEHTNVSIPEFLAPETLECVSEIHRISDSNWKQFMADEITDMESHLMPYPIKVDKKGAVSAR--VKYFPDTKAP--VTGTSSLTMPDNLTT 315
            PRG VH FRMSLWAEHT      FL P + ECV  +  I+++NW+ F++DE TDM SH++PYP+ V + G V+A    ++FPDT+A   V G  S TMPD LTT
Sbjct:  989 PRGRVHGFRMSLWAEHTGEIEEVFLYPSSEECVRRVRDIAENNWQTFISDETTDMRSHIVPYPVVVGEDGRVTALEGFEHFPDTEAEAKVLGKKSSTMPDILTT 1092          
BLAST of mRNA_M-pyrifera_M_contig95710.22072.1 vs. uniprot
Match: A0A0V0HMU3_SOLCH (Phospholipase D n=2 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0HMU3_SOLCH)

HSP 1 Score: 99.8 bits (247), Expect = 6.900e-24
Identity = 47/106 (44.34%), Postives = 68/106 (64.15%), Query Frame = 1
Query:    1 RGQPSPRGGVHNFRMSLWAEHTNVSIPEFLAPETLECVSEIHRISDSNWKQFMADEITDMESHLMPYPIKVDKKGAVSARVKY--FPDTKAPVTGTSSLTMPDNLT 312
            R Q SP G ++ +RMSLWAEH  V    F+ PE+LECV  +  + ++NW+QF ADE+T+M  HL+ YP++VD++G V     +  FPD    + G S L + +NLT
Sbjct:  108 RNQSSPSGQIYKYRMSLWAEHLGVVDDYFIRPESLECVRRVRSMGEANWRQFSADEVTEMRGHLLKYPVEVDRRGKVKNLPGFEEFPDVGGDIIG-SFLAIQENLT 212          
BLAST of mRNA_M-pyrifera_M_contig95710.22072.1 vs. uniprot
Match: A0A1J3G1Q9_NOCCA (Phospholipase D beta 2 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3G1Q9_NOCCA)

HSP 1 Score: 95.1 bits (235), Expect = 3.610e-23
Identity = 47/106 (44.34%), Postives = 67/106 (63.21%), Query Frame = 1
Query:    1 RGQPSPRGGVHNFRMSLWAEHTNVSIPEFLAPETLECVSEIHRISDSNWKQFMADEITDMESHLMPYPIKVDKKGAVS--ARVKYFPDTKAPVTGTSSLTMPDNLT 312
            R Q  PRG ++ +RMSLWAEH       F  PE++ECVS++  +++ NWKQF A+++T+M  HL+ YP+ VD KG V   A  + FPD    + G S L + +NLT
Sbjct:   10 RQQSGPRGQIYGYRMSLWAEHMGRLDDSFEEPESIECVSKVRTMAEENWKQFRAEQVTEMRGHLLQYPVDVDGKGKVRPLAGSEEFPDVGGNIVG-SFLGIQENLT 114          
BLAST of mRNA_M-pyrifera_M_contig95710.22072.1 vs. uniprot
Match: A0A2Z6N8C8_TRISU (Phospholipase D n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6N8C8_TRISU)

HSP 1 Score: 102 bits (254), Expect = 3.890e-23
Identity = 51/106 (48.11%), Postives = 66/106 (62.26%), Query Frame = 1
Query:    1 RGQPSPRGGVHNFRMSLWAEHTNVSIPEFLAPETLECVSEIHRISDSNWKQFMADEITDMESHLMPYPIKVDKKGAVSARV--KYFPDTKAPVTGTSSLTMPDNLT 312
            R Q  P G +H +RMSLWAEHT      FL PE+LECV  +  I + NWKQF A+E+T+M  HL+ YP+ VD+KG V +    + FPD    + G S L M +NLT
Sbjct:  987 RKQSCPHGQIHGYRMSLWAEHTGTIDECFLQPESLECVRRVRAIGEMNWKQFAANEVTEMRGHLLKYPVDVDRKGKVRSLPGQEEFPDVGGKIVG-SFLAMKENLT 1091          
BLAST of mRNA_M-pyrifera_M_contig95710.22072.1 vs. uniprot
Match: A0A151S7H2_CAJCA (Phospholipase D n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151S7H2_CAJCA)

HSP 1 Score: 102 bits (253), Expect = 5.300e-23
Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = 1
Query:    1 RGQPSPRGGVHNFRMSLWAEHTNVSIPEFLAPETLECVSEIHRISDSNWKQFMADEITDMESHLMPYPIKVDKKGAVSARVKY--FPDTKAPVTGTSSLTMPDNLT 312
            R Q  P G +H +RMSLWAEHT      FL PE+LECV  +  + + NWKQF A+E+++M+ HL+ YP++VD+KG V     Y  FPD    + G S L M +NLT
Sbjct:  941 RKQSYPHGQIHGYRMSLWAEHTGTYEECFLQPESLECVRRVRTMGEINWKQFSANEVSEMQGHLLKYPVEVDRKGKVRPLPGYEEFPDVGGKIVG-SFLAMKENLT 1045          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95710.22072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4I9A1_9EUKA7.720e-2654.00Phospholipase D n=1 Tax=Vannella sp. CB-2014 TaxID... [more]
A0A388JWQ7_CHABU7.780e-2651.46Phospholipase D n=1 Tax=Chara braunii TaxID=69332 ... [more]
A0A388JWR0_CHABU4.960e-2550.00Phospholipase D n=1 Tax=Chara braunii TaxID=69332 ... [more]
UPI000B8D1A101.650e-2450.00phospholipase D beta 1-like n=1 Tax=Carica papaya ... [more]
A0A1S3TT58_VIGRR3.240e-2449.06Phospholipase D n=6 Tax=Vigna TaxID=3913 RepID=A0A... [more]
A0A388LVH4_CHABU4.420e-2451.92Phospholipase D n=1 Tax=Chara braunii TaxID=69332 ... [more]
A0A0V0HMU3_SOLCH6.900e-2444.34Phospholipase D n=2 Tax=Solanum chacoense TaxID=41... [more]
A0A1J3G1Q9_NOCCA3.610e-2344.34Phospholipase D beta 2 (Fragment) n=1 Tax=Noccaea ... [more]
A0A2Z6N8C8_TRISU3.890e-2348.11Phospholipase D n=1 Tax=Trifolium subterraneum Tax... [more]
A0A151S7H2_CAJCA5.300e-2347.17Phospholipase D n=2 Tax=Cajanus cajan TaxID=3821 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95710contigM-pyrifera_M_contig95710:404..721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score105.9
Seed ortholog evalue1.2e-20
Seed eggNOG ortholog3649.evm.model.supercontig_18.175
KEGG rclassRC00017,RC00425
KEGG koko:K01115
KEGG ReactionR01310,R02051,R07385
KEGG Pathwayko00564,ko00565,ko01100,ko01110,ko04014,ko04024,ko04071,ko04072,ko04144,ko04666,ko04724,ko04912,ko05231,map00564,map00565,map01100,map01110,map04014,map04024,map04071,map04072,map04144,map04666,map04724,map04912,map05231
Hectar predicted targeting categoryother localisation
GOsGO:0002376,GO:0003674,GO:0003824,GO:0004620,GO:0004630,GO:0005488,GO:0005543,GO:0005546,GO:0005575,GO:0005911,GO:0006950,GO:0006952,GO:0006955,GO:0008081,GO:0008150,GO:0008289,GO:0009506,GO:0009605,GO:0009607,GO:0009617,GO:0009814,GO:0009816,GO:0010035,GO:0010038,GO:0016298,GO:0016787,GO:0016788,GO:0030054,GO:0035091,GO:0042221,GO:0042578,GO:0042742,GO:0043167,GO:0043168,GO:0043207,GO:0045087,GO:0046686,GO:0050896,GO:0051704,GO:0051707,GO:0055044,GO:0098542,GO:1901981,GO:1902936
EggNOG free text desc.phospholipase d beta 1
EggNOG OGs37RQH@33090,3G9ND@35493,3HYXW@3699,COG1502@1,KOG1329@2759
EC3.1.4.4
COG Functional cat.I
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Exons1
Model size318
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816872.0863354-CDS-M-pyrifera_M_contig95710:403..7211622816872.0863354-CDS-M-pyrifera_M_contig95710:403..721Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95710 404..721 -
1692278228.115356-CDS-M-pyrifera_M_contig95710:403..7211692278228.115356-CDS-M-pyrifera_M_contig95710:403..721Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95710 404..721 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95710.22072.1prot_M-pyrifera_M_contig95710.22072.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95710 404..721 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95710.22072.1

>prot_M-pyrifera_M_contig95710.22072.1 ID=prot_M-pyrifera_M_contig95710.22072.1|Name=mRNA_M-pyrifera_M_contig95710.22072.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
RGQPSPRGGVHNFRMSLWAEHTNVSIPEFLAPETLECVSEIHRISDSNWK
QFMADEITDMESHLMPYPIKVDKKGAVSARVKYFPDTKAPVTGTSSLTMP
DNLTT*
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mRNA from alignment at M-pyrifera_M_contig95710:404..721-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95710.22072.1 ID=mRNA_M-pyrifera_M_contig95710.22072.1|Name=mRNA_M-pyrifera_M_contig95710.22072.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig95710:404..721- (Macrocystis pyrifera P11B4 male)
CGCGGCCAGCCCAGCCCCCGTGGTGGTGTGCACAACTTCAGAATGTCTCT CTGGGCAGAGCACACGAACGTCTCCATTCCCGAATTCCTGGCCCCCGAGA CACTGGAATGCGTGAGTGAGATCCATCGCATCTCAGATTCCAACTGGAAG CAGTTCATGGCCGACGAGATCACCGACATGGAGAGCCACCTCATGCCTTA TCCCATCAAGGTGGACAAGAAGGGAGCTGTCTCTGCCAGAGTCAAGTACT TCCCCGATACGAAGGCACCAGTCACTGGCACCTCGTCTCTCACCATGCCA GACAACCTCACAACATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95710:404..721-

>mRNA_M-pyrifera_M_contig95710.22072.1 ID=mRNA_M-pyrifera_M_contig95710.22072.1|Name=mRNA_M-pyrifera_M_contig95710.22072.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig95710:404..721- (Macrocystis pyrifera P11B4 male)
CGCGGCCAGCCCAGCCCCCGTGGTGGTGTGCACAACTTCAGAATGTCTCT
CTGGGCAGAGCACACGAACGTCTCCATTCCCGAATTCCTGGCCCCCGAGA
CACTGGAATGCGTGAGTGAGATCCATCGCATCTCAGATTCCAACTGGAAG
CAGTTCATGGCCGACGAGATCACCGACATGGAGAGCCACCTCATGCCTTA
TCCCATCAAGGTGGACAAGAAGGGAGCTGTCTCTGCCAGAGTCAAGTACT
TCCCCGATACGAAGGCACCAGTCACTGGCACCTCGTCTCTCACCATGCCA
GACAACCTCACAACATGACGCGGCCAGCCCAGCCCCCGTGGTGGTGTGCA
CAACTTCAGAATGTCTCTCTGGGCAGAGCACACGAACGTCTCCATTCCCG
AATTCCTGGCCCCCGAGACACTGGAATGCGTGAGTGAGATCCATCGCATC
TCAGATTCCAACTGGAAGCAGTTCATGGCCGACGAGATCACCGACATGGA
GAGCCACCTCATGCCTTATCCCATCAAGGTGGACAAGAAGGGAGCTGTCT
CTGCCAGAGTCAAGTACTTCCCCGATACGAAGGCACCAGTCACTGGCACC
TCGTCTCTCACCATGCCAGACAACCTCACAACATGA
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