mRNA_M-pyrifera_M_contig95704.22067.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95704.22067.1
Unique NamemRNA_M-pyrifera_M_contig95704.22067.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig95704.22067.1 vs. uniprot
Match: A0A1H8NGS4_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillales bacterium URHD0017 TaxID=1380357 RepID=A0A1H8NGS4_9PROT)

HSP 1 Score: 59.3 bits (142), Expect = 1.750e-7
Identity = 37/82 (45.12%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:  112 VAATFTVVDNLDPGLAVGLFQPGKQYPAHVRVPTAFAPATDPARVGP-ALAIRLFGVDGEFVREADAAARTHDFILGTQPVF 354
            V A+F V+DN+     VGLF    +Y A +R      P T+    GP  +AI+L GV GE + EA+A+A THDFIL   PVF
Sbjct:   45 VRASFEVLDNIPTRYKVGLFAKPGRYDALIRFSNG--PQTEDREAGPQGMAIKLIGVPGEKILEAEASATTHDFILIDGPVF 124
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BLAST of mRNA_M-pyrifera_M_contig95704.22067.1 vs. uniprot
Match: A0A8J6SPG7_9CYAN (Catalase family protein n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A8J6SPG7_9CYAN)

HSP 1 Score: 58.9 bits (141), Expect = 1.930e-7
Identity = 38/91 (41.76%), Postives = 50/91 (54.95%), Query Frame = 1 
Query:  109 CVAATFTVVDNLDPGLAVGLFQPGKQYPAHVRVPT-AFAPATDPARVGPALAIRLFGVDGEFVREADAAARTHDFILGTQPVFPYADAAAY 378
            CV A F V D+L   L VG+F+  ++YPA VR+   A  P  D       +AI+L GV+GE V EA+   +T DF L   PVF   +A  Y
Sbjct:   53 CVKAEFIVADDLPDELRVGIFKEPRRYPAWVRLSNGARQPQPDAKGDTRGIAIKLLGVEGEKVLEAEKHEQTQDFTLVNHPVFAIRNAQDY 143
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BLAST of mRNA_M-pyrifera_M_contig95704.22067.1 vs. uniprot
Match: A0A4R2KSY7_9GAMM (Catalase n=2 Tax=Chromatocurvus halotolerans TaxID=1132028 RepID=A0A4R2KSY7_9GAMM)

HSP 1 Score: 58.9 bits (141), Expect = 2.000e-7
Identity = 40/93 (43.01%), Postives = 50/93 (53.76%), Query Frame = 1 
Query:  109 CVAATFTVVDNLDPGLAVGLFQPGKQYPAHVRVPTAFAPATDPARVGPA--LAIRLFGVDGEFVREADAAARTHDFILGTQPVFPYADAAAYA 381
            CVAA F + D+L PGLA G+FQPG  Y A +R       AT     G    +AI+L+ V GE +  +   A   DFIL + PVF   DA  YA
Sbjct:   90 CVAADFAINDDLPPGLAHGVFQPGAAYRAKIRFSNGSPNATGDDITGDTRGMAIKLYDVPGEKLFTSADRADQQDFILISSPVFFINDADDYA 182
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BLAST of mRNA_M-pyrifera_M_contig95704.22067.1 vs. uniprot
Match: UPI00068DD42E (catalase family protein n=1 Tax=Aquabacterium sp. NJ1 TaxID=1538295 RepID=UPI00068DD42E)

HSP 1 Score: 53.5 bits (127), Expect = 1.500e-5
Identity = 44/135 (32.59%), Postives = 63/135 (46.67%), Query Frame = 1 
Query:   19 ERVPENESAALAAVSRALAGATPAATD------------SGRCVAATFTVVDNLDPGLAVGLFQPGKQYPAHVRVPTAFAPATDP-ARVGPALAIRLFGVDGEFVREADAAARTHDFILGTQPVFPYADAAAYAA 384
            E +P  E+AA A++  A+  +  A  D            S  CV ATF+V+D L P LA GLF   K Y A VR       + D        +A+++ GV G  + + +  A T DF++   PVF   +A  Y A
Sbjct:   40 EVIPAGEAAATASIVTAIQTSVQAGFDKNGHAFRDAHRKSHGCVQATFSVLDQLPPKLAQGLFATPKSYNAVVRFSNGSGSSQDDHTNDARGMAVKVMGVPGLKLLDDEQTASTQDFLMTNHPVFFIRNAVDYGA 174
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BLAST of mRNA_M-pyrifera_M_contig95704.22067.1 vs. uniprot
Match: A0A0Q5RDX8_9SPHN (Catalase n=1 Tax=Sphingomonas sp. Leaf357 TaxID=1736350 RepID=A0A0Q5RDX8_9SPHN)

HSP 1 Score: 51.2 bits (121), Expect = 9.540e-5
Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 1 
Query:  112 VAATFTVVDNLDPGLAVGLFQPGKQYPAHVRVPTAFAPATDPA-RVGPALAIRLFGVDGEFVREADAAARTHDFILGTQPVFPYADAAAY 378
            V  TFTV+D+L P LA GLF    +Y A +R+ TA     D +   G  +A+++FGV GE +  A+   +  DFI+   PVF   D A++
Sbjct:   55 VTGTFTVLDDLPPELAQGLFAEAGEYDAVLRISTAPGDILDDSVSSGRGVALKVFGVPGERLPGAEDGEQ--DFIMVNAPVFGAPDPASF 142
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95704.22067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1H8NGS4_9PROT1.750e-745.12Uncharacterized protein n=1 Tax=Rhodospirillales b... [more]
A0A8J6SPG7_9CYAN1.930e-741.76Catalase family protein n=4 Tax=Cyanobacteria TaxI... [more]
A0A4R2KSY7_9GAMM2.000e-743.01Catalase n=2 Tax=Chromatocurvus halotolerans TaxID... [more]
UPI00068DD42E1.500e-532.59catalase family protein n=1 Tax=Aquabacterium sp. ... [more]
A0A0Q5RDX8_9SPHN9.540e-538.89Catalase n=1 Tax=Sphingomonas sp. Leaf357 TaxID=17... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95704contigM-pyrifera_M_contig95704:259..687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size429
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816871.833904-CDS-M-pyrifera_M_contig95704:258..6871622816871.833904-CDS-M-pyrifera_M_contig95704:258..687Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95704 259..687 +
1692278227.9391158-CDS-M-pyrifera_M_contig95704:258..6871692278227.9391158-CDS-M-pyrifera_M_contig95704:258..687Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95704 259..687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95704.22067.1prot_M-pyrifera_M_contig95704.22067.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95704 259..687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95704.22067.1

>prot_M-pyrifera_M_contig95704.22067.1 ID=prot_M-pyrifera_M_contig95704.22067.1|Name=mRNA_M-pyrifera_M_contig95704.22067.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
APPLGFERVPENESAALAAVSRALAGATPAATDSGRCVAATFTVVDNLDP
GLAVGLFQPGKQYPAHVRVPTAFAPATDPARVGPALAIRLFGVDGEFVRE
ADAAARTHDFILGTQPVFPYADAAAYAAAITNYLARPTGGSGK
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mRNA from alignment at M-pyrifera_M_contig95704:259..687+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95704.22067.1 ID=mRNA_M-pyrifera_M_contig95704.22067.1|Name=mRNA_M-pyrifera_M_contig95704.22067.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig95704:259..687+ (Macrocystis pyrifera P11B4 male)
GCACCACCGCTGGGTTTCGAGCGCGTGCCCGAAAATGAAAGCGCGGCGCT
CGCCGCCGTCAGCCGCGCGCTTGCCGGCGCGACGCCCGCAGCGACCGACT
CCGGACGTTGCGTGGCGGCGACATTTACCGTCGTCGACAACCTCGATCCG
GGGCTCGCGGTGGGCCTGTTTCAACCCGGTAAACAGTACCCGGCGCACGT
CCGCGTCCCGACGGCGTTCGCCCCGGCAACGGATCCGGCGCGGGTCGGCC
CGGCACTGGCGATCCGGCTGTTCGGGGTTGACGGCGAGTTCGTCCGCGAA
GCCGATGCCGCCGCGCGCACACACGATTTCATCCTCGGTACGCAACCCGT
GTTTCCGTACGCCGACGCCGCAGCCTATGCCGCGGCGATCACGAACTACC
TCGCGCGGCCGACCGGCGGCAGCGGCAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95704:259..687+

>mRNA_M-pyrifera_M_contig95704.22067.1 ID=mRNA_M-pyrifera_M_contig95704.22067.1|Name=mRNA_M-pyrifera_M_contig95704.22067.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig95704:259..687+ (Macrocystis pyrifera P11B4 male)
GCACCACCGCTGGGTTTCGAGCGCGTGCCCGAAAATGAAAGCGCGGCGCT
CGCCGCCGTCAGCCGCGCGCTTGCCGGCGCGACGCCCGCAGCGACCGACT
CCGGACGTTGCGTGGCGGCGACATTTACCGTCGTCGACAACCTCGATCCG
GGGCTCGCGGTGGGCCTGTTTCAACCCGGTAAACAGTACCCGGCGCACGT
CCGCGTCCCGACGGCGTTCGCCCCGGCAACGGATCCGGCGCGGGTCGGCC
CGGCACTGGCGATCCGGCTGTTCGGGGTTGACGGCGAGTTCGTCCGCGAA
GCCGATGCCGCCGCGCGCACACACGATTTCATCCTCGGTACGCAACCCGT
GTTTCCGTACGCCGACGCCGCAGCCTATGCCGCGGCGATCACGAACTACC
TCGCGCGGCCGACCGGCGGCAGCGGCAAAGCACCACCGCTGGGTTTCGAG
CGCGTGCCCGAAAATGAAAGCGCGGCGCTCGCCGCCGTCAGCCGCGCGCT
TGCCGGCGCGACGCCCGCAGCGACCGACTCCGGACGTTGCGTGGCGGCGA
CATTTACCGTCGTCGACAACCTCGATCCGGGGCTCGCGGTGGGCCTGTTT
CAACCCGGTAAACAGTACCCGGCGCACGTCCGCGTCCCGACGGCGTTCGC
CCCGGCAACGGATCCGGCGCGGGTCGGCCCGGCACTGGCGATCCGGCTGT
TCGGGGTTGACGGCGAGTTCGTCCGCGAAGCCGATGCCGCCGCGCGCACA
CACGATTTCATCCTCGGTACGCAACCCGTGTTTCCGTACGCCGACGCCGC
AGCCTATGCCGCGGCGATCACGAACTACCTCGCGCGGCCGACCGGCGGCA
GCGGCAAA
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