mRNA_M-pyrifera_M_contig95699.22064.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95699.22064.1
Unique NamemRNA_M-pyrifera_M_contig95699.22064.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig95699.22064.1 vs. uniprot
Match: A0A5C7KXV2_9GAMM (DUF2063 domain-containing protein n=1 Tax=Sinobacteraceae bacterium TaxID=1969813 RepID=A0A5C7KXV2_9GAMM)

HSP 1 Score: 61.2 bits (147), Expect = 1.370e-9
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    1 IDLNSASARAVELLLRDEGFSGAEIMRAVAAELRHPNPDAVVAAGREILERLVARDAILGTR 186
            +++N+ +AR ++LL  D   SG E++ A+A EL+HP P AV+ AG  IL  L ARD +LGTR
Sbjct:  195 MEINAVTARLMQLLEEDAAASGGELLAAIARELQHPQPQAVIDAGAAILADLRARDIVLGTR 256          
BLAST of mRNA_M-pyrifera_M_contig95699.22064.1 vs. uniprot
Match: A0A5C7UC22_RHISP (DUF2063 domain-containing protein n=1 Tax=Rhizobium sp. TaxID=391 RepID=A0A5C7UC22_RHISP)

HSP 1 Score: 60.8 bits (146), Expect = 1.910e-9
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    1 IDLNSASARAVELLLRDEGFSGAEIMRAVAAELRHPNPDAVVAAGREILERLVARDAILGTR 186
            +++N+ +AR ++LL  D   SGAE+M  +A EL HP P+AVV AG EIL  L  RD +LG R
Sbjct:  195 MEINAVTARLMQLLEEDAESSGAELMTRIARELNHPQPEAVVEAGAEILRDLRERDILLGAR 256          
BLAST of mRNA_M-pyrifera_M_contig95699.22064.1 vs. uniprot
Match: UPI0013EA01AC (putative DNA-binding domain-containing protein n=1 Tax=Thioalkalivibrio sp. XN8 TaxID=2712863 RepID=UPI0013EA01AC)

HSP 1 Score: 57.4 bits (137), Expect = 3.790e-8
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    1 IDLNSASARAVELLLRDEGFS-GAEIMRAVAAELRHPNPDAVVAAGREILERLVARDAILGTR 186
            +++N  +AR +ELL R  G S G + +  +AAEL HP+PD VVAAG  IL+ L ARD ILG R
Sbjct:  191 LEINPVTARLLELLDRAVGASSGRDCLLQIAAELGHPSPDTVVAAGAAILDDLRARDVILGVR 253          
BLAST of mRNA_M-pyrifera_M_contig95699.22064.1 vs. uniprot
Match: A0A2T5MBL6_9GAMM (DUF2063 domain-containing protein n=1 Tax=Stenotrophobium rhamnosiphilum TaxID=2029166 RepID=A0A2T5MBL6_9GAMM)

HSP 1 Score: 57.0 bits (136), Expect = 4.980e-8
Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 1
Query:    1 IDLNSASARAVELLLRDEGFSGAEIMRAVAAELRHPNPDAVVAAGREILERLVARDAILGTR 186
            +++N+ +AR ++LL  D   SG +++  +A EL HP P AVV AG EIL  L  RD +LGTR
Sbjct:  195 MEINAVTARLMQLLEEDVTSSGTQLLTQIATELGHPQPQAVVDAGAEILRDLRERDILLGTR 256          
BLAST of mRNA_M-pyrifera_M_contig95699.22064.1 vs. uniprot
Match: UPI00190DF2C9 (putative DNA-binding domain-containing protein n=1 Tax=Halochromatium glycolicum TaxID=85075 RepID=UPI00190DF2C9)

HSP 1 Score: 57.0 bits (136), Expect = 5.120e-8
Identity = 27/61 (44.26%), Postives = 42/61 (68.85%), Query Frame = 1
Query:    1 IDLNSASARAVELLLRDEGFSGAEIMRAVAAELRHPNPDAVVAAGREILERLVARDAILGT 183
            + +N+ + R ++LL   E  SG E++RA+A EL+HPNPD V+A GR +L+ L  R  ++GT
Sbjct:  197 LKINAVTQRLLQLLQAGEQRSGLEVLRAIAGELQHPNPDQVIAFGRGLLDDLRERHILIGT 257          
BLAST of mRNA_M-pyrifera_M_contig95699.22064.1 vs. uniprot
Match: A0YCS5_9GAMM (DUF2063 domain-containing protein n=1 Tax=marine gamma proteobacterium HTCC2143 TaxID=247633 RepID=A0YCS5_9GAMM)

HSP 1 Score: 55.5 bits (132), Expect = 1.750e-7
Identity = 26/60 (43.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 IDLNSASARAVELLLRDEGFSGAEIMRAVAAELRHPNPDAVVAAGREILERLVARDAILG 180
            +++NS +AR +E+LL+D+  +G +++  +AAEL H +P  VVAAG EI+++L     ILG
Sbjct:  188 MEINSVTARMLEILLQDQSLTGRQVLAQIAAELNHADPRQVVAAGLEIMQQLRGLGIILG 247          
BLAST of mRNA_M-pyrifera_M_contig95699.22064.1 vs. uniprot
Match: A0A0P9CKP7_9GAMM (DUF2063 domain-containing protein n=1 Tax=Thiohalorhabdus denitrificans TaxID=381306 RepID=A0A0P9CKP7_9GAMM)

HSP 1 Score: 54.7 bits (130), Expect = 3.550e-7
Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = 1
Query:    1 IDLNSASARAVELLLRDEGFSGAEIMRAVAAELRHPNPDAVVAAGREILERLVARDAILGT 183
            +++N  +AR +EL+   E   GAE++R +AAE+ HP+P+ VVA G +IL  L  RD +LGT
Sbjct:  200 LEINPVTARLLELM-EQEPAPGAELLRRIAAEIAHPDPERVVAFGADILADLRQRDVVLGT 259          
BLAST of mRNA_M-pyrifera_M_contig95699.22064.1 vs. uniprot
Match: A0A7C5C583_9GAMM (DUF2063 domain-containing protein n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A7C5C583_9GAMM)

HSP 1 Score: 54.3 bits (129), Expect = 4.790e-7
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 1
Query:    4 DLNSASARAVELLLRDEGFSGAEIMRAVAAELRHPNPDAVVAAGREILERLVARDAILGT 183
            +LN  +AR +EL+   E  SG  ++  VA E+RHP+PD VVA G  +LE L +  AILGT
Sbjct:  192 ELNPVTARLLELVAGGEHASGHAMLEQVAGEIRHPDPDRVVAGGLAVLETLRSAGAILGT 251          
BLAST of mRNA_M-pyrifera_M_contig95699.22064.1 vs. uniprot
Match: UPI00190834B5 (putative DNA-binding domain-containing protein n=1 Tax=Thiohalocapsa halophila TaxID=69359 RepID=UPI00190834B5)

HSP 1 Score: 54.3 bits (129), Expect = 5.080e-7
Identity = 28/62 (45.16%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    1 IDLNSASARAVELLLRDEGFSGAEIMRAVAAELRHPNPDAVVAAGREILERLVARDAILGTR 186
            +++N+ + R + LL  +   +G E M+ +AAEL HP PD V+AAG  +L  L  RD ILGTR
Sbjct:  200 LEINAVTQRLLALLEDETPRTGREAMQVIAAELGHPEPDKVIAAGARMLTDLRRRDVILGTR 261          
BLAST of mRNA_M-pyrifera_M_contig95699.22064.1 vs. uniprot
Match: A0A1W9KND6_9PROT (DUF2063 domain-containing protein n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A1W9KND6_9PROT)

HSP 1 Score: 53.9 bits (128), Expect = 6.710e-7
Identity = 28/61 (45.90%), Postives = 38/61 (62.30%), Query Frame = 1
Query:    1 IDLNSASARAVELLLRDEGFSGAEIMRAVAAELRHPNPDAVVAAGREILERLVARDAILGT 183
            I++N  +AR ++LL  D+   G  +++ VAAEL HP PDAV+  G EIL  L     ILGT
Sbjct:  197 IEINPVTARLLQLLSGDDPVPGRSVLQQVAAELNHPQPDAVIQGGIEILRNLRKCHVILGT 257          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95699.22064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A5C7KXV2_9GAMM1.370e-948.39DUF2063 domain-containing protein n=1 Tax=Sinobact... [more]
A0A5C7UC22_RHISP1.910e-950.00DUF2063 domain-containing protein n=1 Tax=Rhizobiu... [more]
UPI0013EA01AC3.790e-852.38putative DNA-binding domain-containing protein n=1... [more]
A0A2T5MBL6_9GAMM4.980e-846.77DUF2063 domain-containing protein n=1 Tax=Stenotro... [more]
UPI00190DF2C95.120e-844.26putative DNA-binding domain-containing protein n=1... [more]
A0YCS5_9GAMM1.750e-743.33DUF2063 domain-containing protein n=1 Tax=marine g... [more]
A0A0P9CKP7_9GAMM3.550e-745.90DUF2063 domain-containing protein n=1 Tax=Thiohalo... [more]
A0A7C5C583_9GAMM4.790e-748.33DUF2063 domain-containing protein n=1 Tax=Chromati... [more]
UPI00190834B55.080e-745.16putative DNA-binding domain-containing protein n=1... [more]
A0A1W9KND6_9PROT6.710e-745.90DUF2063 domain-containing protein n=2 Tax=Proteoba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95699contigM-pyrifera_M_contig95699:532..726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816871.5243127-CDS-M-pyrifera_M_contig95699:531..7261622816871.5243127-CDS-M-pyrifera_M_contig95699:531..726Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95699 532..726 -
1692278227.6864269-CDS-M-pyrifera_M_contig95699:531..7261692278227.6864269-CDS-M-pyrifera_M_contig95699:531..726Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95699 532..726 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95699.22064.1prot_M-pyrifera_M_contig95699.22064.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95699 532..726 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95699.22064.1

>prot_M-pyrifera_M_contig95699.22064.1 ID=prot_M-pyrifera_M_contig95699.22064.1|Name=mRNA_M-pyrifera_M_contig95699.22064.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp
IDLNSASARAVELLLRDEGFSGAEIMRAVAAELRHPNPDAVVAAGREILE
RLVARDAILGTRLA*
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mRNA from alignment at M-pyrifera_M_contig95699:532..726-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95699.22064.1 ID=mRNA_M-pyrifera_M_contig95699.22064.1|Name=mRNA_M-pyrifera_M_contig95699.22064.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=195bp|location=Sequence derived from alignment at M-pyrifera_M_contig95699:532..726- (Macrocystis pyrifera P11B4 male)
ATCGACCTGAATTCCGCGAGCGCGCGCGCCGTCGAACTGCTGTTGCGCGA TGAAGGTTTCAGCGGTGCGGAGATCATGCGTGCGGTCGCGGCGGAATTGC GCCATCCGAACCCTGACGCCGTCGTTGCCGCCGGACGCGAGATTCTCGAA CGGCTCGTCGCACGCGACGCGATACTCGGTACGCGGCTGGCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95699:532..726-

>mRNA_M-pyrifera_M_contig95699.22064.1 ID=mRNA_M-pyrifera_M_contig95699.22064.1|Name=mRNA_M-pyrifera_M_contig95699.22064.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig95699:532..726- (Macrocystis pyrifera P11B4 male)
ATCGACCTGAATTCCGCGAGCGCGCGCGCCGTCGAACTGCTGTTGCGCGA
TGAAGGTTTCAGCGGTGCGGAGATCATGCGTGCGGTCGCGGCGGAATTGC
GCCATCCGAACCCTGACGCCGTCGTTGCCGCCGGACGCGAGATTCTCGAA
CGGCTCGTCGCACGCGACGCGATACTCGGTACGCGGCTGGCCTGAATCGA
CCTGAATTCCGCGAGCGCGCGCGCCGTCGAACTGCTGTTGCGCGATGAAG
GTTTCAGCGGTGCGGAGATCATGCGTGCGGTCGCGGCGGAATTGCGCCAT
CCGAACCCTGACGCCGTCGTTGCCGCCGGACGCGAGATTCTCGAACGGCT
CGTCGCACGCGACGCGATACTCGGTACGCGGCTGGCCTGA
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