mRNA_M-pyrifera_M_contig95699.22063.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95699.22063.1
Unique NamemRNA_M-pyrifera_M_contig95699.22063.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig95699.22063.1 vs. uniprot
Match: A0A0S8FEA0_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium SG8_31 TaxID=1703405 RepID=A0A0S8FEA0_9GAMM)

HSP 1 Score: 142 bits (359), Expect = 2.890e-37
Identity = 78/166 (46.99%), Postives = 100/166 (60.24%), Query Frame = 1
Query:    1 YYQNVLRARAGLLEPAVAWQKLASGFARGRQQTTGKRSLVDATDTLMHARQYMRVYWSGAAIALIADVELRQRTHGAMSLDRVLDELAQCCLPTQDRWRPSALMEKMDAIAGTGTFMRLYEMYVERPVFPDVDRVLDVLGLGPQRPPAGSVAARTAANLRHAIMGG 498
            Y+QNVLRARAG+L    AW KL +GF RGR+ T G   L +A+  +     YMRVYWSGAAIAL+ADVELR+ + G +SLD  L  LA CCLP++  W    L +++D + GT  F RLY  +     FPD+  V D LG+            R +A+LR AIM G
Sbjct:  301 YFQNVLRARAGMLPERDAWLKLYNGFQRGRRGTAGL-PLDEASRDMGQKGLYMRVYWSGAAIALLADVELRETSGGRLSLDTALSALADCCLPSERAWSGQELFQRLDELTGTAVFTRLYRQHARSRSFPDLTEVSDRLGIDHGTRGLRFSRQRRSADLRTAIMSG 465          
BLAST of mRNA_M-pyrifera_M_contig95699.22063.1 vs. uniprot
Match: A0A523LDJ1_9GAMM (Peptidase_M61 domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523LDJ1_9GAMM)

HSP 1 Score: 142 bits (357), Expect = 7.250e-37
Identity = 73/167 (43.71%), Postives = 98/167 (58.68%), Query Frame = 1
Query:    1 YYQNVLRARAGLLEPAVAWQKLASGFARGRQQTTGKRSLVDATDTLMHARQYMRVYWSGAAIALIADVELRQRTHGAMSLDRVLDELAQCCLPTQDRWRPSALMEKMDAIAGTGTFMRLYEMYVERPVFPDVDRVLDVLGLGPQRPPAGSVAARTAANLRHAIMGGE 501
            YYQNVL ARAG      AWQKL  GF RG + T G ++L+DA+  +     YMRVYW+G AIAL+AD+ELRQRT G +SLD  +   A CCLP+   W+   +M+++D + G   F+ L++ Y+E   FP++      LGL   R           A LR AIM G+
Sbjct:  317 YYQNVLMARAGEYSEHKAWQKLHEGFQRGIRNTRGDQTLLDASRNMRRDGAYMRVYWTGTAIALLADLELRQRTGGQISLDLAMQRFADCCLPSDKTWQARDVMQRLDQLVGETVFVPLHDRYIESSDFPELHDAYRALGLDVSRDEVSLDDGAPLAALRKAIMTGK 483          
BLAST of mRNA_M-pyrifera_M_contig95699.22063.1 vs. uniprot
Match: UPI001998C5D8 (Uncharacterized protein n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI001998C5D8)

HSP 1 Score: 132 bits (331), Expect = 8.070e-36
Identity = 76/169 (44.97%), Postives = 93/169 (55.03%), Query Frame = 1
Query:    1 YYQNVLRARAGLLEPAVAWQKLASGFARGRQQTTGKRSLVDATDTLMHARQYMRVYWSGAAIALIADVELRQRTHGAMSLDRVLDELAQCCLPTQDRWRPSALMEKMDAIAGTGTFMRLYEMYVERPVFPDVDRVLDVLG--LGPQRPPAGSVAARTA---ANLRHAIM 492
            YYQNVLRAR G L    AWQ+L +GF RG Q   G  +L  AT+++     YMRVYW GAAI LIADV LRQ T G  SLD  L  L +CC  T   W    L EK+D + GTG F  +++ +V    FPD+ +    LG  +GP     G +   T      LR AIM
Sbjct:   13 YYQNVLRARGGRLSATEAWQRLHAGFVRGMQSAHGL-TLAQATESMYRDGTYMRVYWEGAAILLIADVRLRQLTVGKQSLDTALAALNECCAATDRAWSARELFEKLDEVTGTGVFREIHDQHVASRNFPDMSQTYRALGVTIGP-----GGIELSTEDKERRLRDAIM 175          
BLAST of mRNA_M-pyrifera_M_contig95699.22063.1 vs. uniprot
Match: A0A2N6CPT8_9GAMM (Peptidase_M61 domain-containing protein n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A2N6CPT8_9GAMM)

HSP 1 Score: 136 bits (343), Expect = 6.640e-35
Identity = 72/141 (51.06%), Postives = 89/141 (63.12%), Query Frame = 1
Query:    1 YYQNVLRARAGLLEPAVAWQKLASGFARGRQQTTGKRSLVDATDTLMHARQYMRVYWSGAAIALIADVELRQRTHGAMSLDRVLDELAQCCLPTQDRWRPSALMEKMDAIAGTGTFMRLYEMYVERPVFPDVDRVLDVLGL 423
            YYQNVLRARAGL+    AW+KL +GF RG++ T    SL DA+  +   R +MRVYWSGAAIAL+AD +LRQ   G MSLD  L  LA+CCLP+   W      E+MD + G   F+ L E Y     FPDVD +L  LG+
Sbjct:  319 YYQNVLRARAGLISETDAWRKLVAGFGRGQRGTRRGISLDDASRAMRRERTFMRVYWSGAAIALLADTQLRQSDAG-MSLDEALSRLARCCLPSPRMWTARQAFERMDELTGNDVFVALAEQYRGSDQFPDVDDLLLRLGV 458          
BLAST of mRNA_M-pyrifera_M_contig95699.22063.1 vs. uniprot
Match: A0A317GYH8_9PROT (Peptidase_M61 domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A317GYH8_9PROT)

HSP 1 Score: 136 bits (342), Expect = 9.360e-35
Identity = 69/141 (48.94%), Postives = 85/141 (60.28%), Query Frame = 1
Query:    1 YYQNVLRARAGLLEPAVAWQKLASGFARGRQQTTGKRSLVDATDTLMHARQYMRVYWSGAAIALIADVELRQRTHGAMSLDRVLDELAQCCLPTQDRWRPSALMEKMDAIAGTGTFMRLYEMYVERPVFPDVDRVLDVLGL 423
            YYQNVLRARAG + P  AW +L +GFARGR+   G  SL DAT+ +     + RVYW GAAI L+AD  LR+R+ G+ SLD  L  L +CCL   D WR   L +K+D I G   F  LYE  V  P FPD++      GL
Sbjct:  317 YYQNVLRARAGWITPREAWSQLHAGFARGRRVMVGM-SLADATERMYRGGAFQRVYWEGAAIMLLADQRLRERSSGSQSLDTALQGLQKCCLAVDDGWRARQLFDKLDQITGMTVFAELYEQLVGAPEFPDLEDTYRRFGL 456          
BLAST of mRNA_M-pyrifera_M_contig95699.22063.1 vs. uniprot
Match: A0A523M236_9GAMM (Peptidase_M61 domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523M236_9GAMM)

HSP 1 Score: 132 bits (332), Expect = 2.120e-33
Identity = 73/152 (48.03%), Postives = 90/152 (59.21%), Query Frame = 1
Query:    1 YYQNVLRARAGLLEPAVAWQKLASGFARGRQQTTGKRSLVDATDTLMHARQY------MRVYWSGAAIALIADVELRQRTHGAMSLDRVLDELAQCCLPTQDRWRPSALMEKMDAIAGTGTFMRLYEMYVERPVFPDVDRVLDVLGLGPQRP 438
            YYQNVLRARAG L    AW+KL  GFARGR+         D  DTL  +  Y      MR+YWSGAAIAL+ADVELR+R+ G  SLD VL++L +CCLP+   W    L + +D +AG   F  LY  +V+   FP V  V   LG+ P  P
Sbjct:  306 YYQNVLRARAGTLTEETAWRKLHEGFARGRRD--------DYRDTLAESVHYRGPNMIMRMYWSGAAIALLADVELRERSGGTQSLDTVLEQLQRCCLPSSRTWSAMELFDTLDELAGGNVFNDLYRRWVDAVEFPAVGPVFARLGVDPDGP 449          
BLAST of mRNA_M-pyrifera_M_contig95699.22063.1 vs. uniprot
Match: A0A3B0XZD2_9ZZZZ (Peptidase_M61 domain-containing protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0XZD2_9ZZZZ)

HSP 1 Score: 127 bits (320), Expect = 1.600e-31
Identity = 63/141 (44.68%), Postives = 88/141 (62.41%), Query Frame = 1
Query:    1 YYQNVLRARAGLLEPAVAWQKLASGFARGRQQTTGKRSLVDATDTLMHARQYMRVYWSGAAIALIADVELRQRTHGAMSLDRVLDELAQCCLPTQDRWRPSALMEKMDAIAGTGTFMRLYEMYVERPVFPDVDRVLDVLGL 423
            YYQNVL AR+ LL    AWQKL  GF RG + T+   +L  A++++M    +MRVYWSGAAI+L+AD ELR+ ++   SLD  L +   CCLP++  W    +++KMD ++ T  F  LY+ Y+    FPD+  V   LGL
Sbjct:  345 YYQNVLGARSRLLTQHRAWQKLHDGFQRGIRGTSPDINLSQASESMMQTGSFMRVYWSGAAISLLADYELRRLSNNEQSLDTALKKFRHCCLPSRSFWSDYKMIKKMDELSDTNVFSHLYQQYLTSTNFPDLSTVYSELGL 485          
BLAST of mRNA_M-pyrifera_M_contig95699.22063.1 vs. uniprot
Match: UPI0019047F21 (hypothetical protein n=1 Tax=Thiohalocapsa halophila TaxID=69359 RepID=UPI0019047F21)

HSP 1 Score: 126 bits (317), Expect = 2.900e-31
Identity = 75/168 (44.64%), Postives = 97/168 (57.74%), Query Frame = 1
Query:    1 YYQNVLRARAGLLEPAVAWQKLASGFARGRQQTTGKRSLVDATDTLMHARQYMRVYWSGAAIALIADVELRQRTHGAMSLDRVLDELAQCCLPTQDRWRPSALMEKMDAIAGTGTFMRLYEMYVERPVFPDVDRVLDVLGLGPQRPPAGSVAAR---TAANLRHAIMG 495
            YYQ++LRARAGLL P  AW KL +GF RG + T    SL   +       +YMRVYWSGAA+AL+AD+ LR+R+ G  SLD VL   A CCLP Q  W     + K+D +AG  TF RL + ++    FP +    + LGL  +      V  R   +A +LR AIMG
Sbjct:  310 YYQSLLRARAGLLPPERAWDKLHAGFRRGIRATEWGESLAAVS---AGGGEYMRVYWSGAAVALLADLALRRRSGGEQSLDTVLAAFADCCLPAQRWWGTQEFIAKLDDLAGGDTFRRLTDAHLRSERFPSLTAAYETLGL--EAIDDRHVELRGDASARSLRRAIMG 472          
BLAST of mRNA_M-pyrifera_M_contig95699.22063.1 vs. uniprot
Match: A0A7Y2N5E2_9GAMM (Peptidase_M61 domain-containing protein n=1 Tax=Woeseiaceae bacterium TaxID=2026806 RepID=A0A7Y2N5E2_9GAMM)

HSP 1 Score: 122 bits (306), Expect = 5.200e-31
Identity = 68/137 (49.64%), Postives = 81/137 (59.12%), Query Frame = 1
Query:    1 YYQNVLRARAGLLEPAVAWQKLASGFARGRQQTTGKRSLVDATDTLMHARQYMRVYWSGAAIALIADVELRQRTHGAMSLDRVLDELAQCCLPTQDRWRPSALMEKMDAIAGTGTFMRLYEMYVERPVFPDVDRVLD 411
            YYQNVL ARAG  EP  A  KLA GF RGR  +        A   L  AR   ++YWSGAAIAL+ADVELRQR+  A SLD VLD   +CCLP+  RW   AL ++ D +     FM LY  Y + P FPD +  L+
Sbjct:  135 YYQNVLMARAGHYEPLEAIDKLAQGFERGRASSPALSPNEAALAGLRRARY--KIYWSGAAIALLADVELRQRSGDAESLDVVLDRFQRCCLPSGRRWSGRALFQQFDRLIEEPVFMPLYRRYADSPGFPDFEDALN 269          
BLAST of mRNA_M-pyrifera_M_contig95699.22063.1 vs. uniprot
Match: A0A7Y3CLX0_9GAMM (Peptidase_M61 domain-containing protein n=1 Tax=Woeseiaceae bacterium TaxID=2026806 RepID=A0A7Y3CLX0_9GAMM)

HSP 1 Score: 120 bits (302), Expect = 4.020e-30
Identity = 64/141 (45.39%), Postives = 82/141 (58.16%), Query Frame = 1
Query:    1 YYQNVLRARAGLLEPAVAWQKLASGFARGRQQTTGKRSLVDATDTLMHARQYMRVYWSGAAIALIADVELRQRTHGAMSLDRVLDELAQCCLPTQDRWRPSALMEKMDAIAGTGTFMRLYEMYVERPVFPDVDRVLDVLGL 423
            YYQN+L ARAG      AWQKL +GF RGR           A   +  AR  M++YWSGAAIAL+AD+ELR+R+ G  SLD  LD L +CCLP++  W    L  K+D++     FM LY  Y +   FPD+   L  LG+
Sbjct:  151 YYQNILMARAGHYTAREAWQKLYAGFERGRLSRPELSPNEAAAAGIRKAR--MKIYWSGAAIALLADIELRERSGGRESLDVALDRLQRCCLPSKRSWSGPTLFAKLDSLVDIPVFMPLYRQYADAAGFPDIRPALQRLGV 289          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95699.22063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0S8FEA0_9GAMM2.890e-3746.99Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A523LDJ1_9GAMM7.250e-3743.71Peptidase_M61 domain-containing protein n=1 Tax=Ga... [more]
UPI001998C5D88.070e-3644.97Uncharacterized protein n=1 Tax=Prolixibacteraceae... [more]
A0A2N6CPT8_9GAMM6.640e-3551.06Peptidase_M61 domain-containing protein n=1 Tax=Ch... [more]
A0A317GYH8_9PROT9.360e-3548.94Peptidase_M61 domain-containing protein n=1 Tax=Pr... [more]
A0A523M236_9GAMM2.120e-3348.03Peptidase_M61 domain-containing protein n=1 Tax=Ga... [more]
A0A3B0XZD2_9ZZZZ1.600e-3144.68Peptidase_M61 domain-containing protein n=1 Tax=hy... [more]
UPI0019047F212.900e-3144.64hypothetical protein n=1 Tax=Thiohalocapsa halophi... [more]
A0A7Y2N5E2_9GAMM5.200e-3149.64Peptidase_M61 domain-containing protein n=1 Tax=Wo... [more]
A0A7Y3CLX0_9GAMM4.020e-3045.39Peptidase_M61 domain-containing protein n=1 Tax=Wo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95699contigM-pyrifera_M_contig95699:3..506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score110.9
Seed ortholog evalue5.7e-22
Seed eggNOG ortholog1123073.KB899242_gene1636
KEGG koko:K13292
Hectar predicted targeting categorymitochondrion
EggNOG OGs1N69B@1224,1RY45@1236,1X82A@135614,COG3975@1,COG3975@2
Best tax levelXanthomonadales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size504
Cds size504
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816871.491549-CDS-M-pyrifera_M_contig95699:2..5061622816871.491549-CDS-M-pyrifera_M_contig95699:2..506Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95699 3..506 +
1692278227.6729045-CDS-M-pyrifera_M_contig95699:2..5061692278227.6729045-CDS-M-pyrifera_M_contig95699:2..506Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95699 3..506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95699.22063.1prot_M-pyrifera_M_contig95699.22063.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95699 3..506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95699.22063.1

>prot_M-pyrifera_M_contig95699.22063.1 ID=prot_M-pyrifera_M_contig95699.22063.1|Name=mRNA_M-pyrifera_M_contig95699.22063.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=168bp
YYQNVLRARAGLLEPAVAWQKLASGFARGRQQTTGKRSLVDATDTLMHAR
QYMRVYWSGAAIALIADVELRQRTHGAMSLDRVLDELAQCCLPTQDRWRP
SALMEKMDAIAGTGTFMRLYEMYVERPVFPDVDRVLDVLGLGPQRPPAGS
VAARTAANLRHAIMGGE*
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mRNA from alignment at M-pyrifera_M_contig95699:3..506+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95699.22063.1 ID=mRNA_M-pyrifera_M_contig95699.22063.1|Name=mRNA_M-pyrifera_M_contig95699.22063.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig95699:3..506+ (Macrocystis pyrifera P11B4 male)
TACTACCAGAACGTTCTGCGCGCACGGGCGGGATTACTGGAACCGGCCGT CGCGTGGCAAAAGCTCGCGTCCGGATTCGCGCGTGGCCGCCAGCAGACCA CCGGCAAGCGCTCGCTCGTTGATGCGACGGATACGCTGATGCACGCCCGA CAGTACATGCGCGTGTACTGGAGCGGCGCGGCGATTGCGCTGATCGCCGA CGTCGAATTACGCCAGCGAACGCATGGCGCGATGTCGCTCGACCGCGTGC TCGACGAACTCGCTCAGTGCTGCCTGCCGACGCAGGATCGCTGGCGGCCC TCGGCGCTGATGGAAAAAATGGACGCGATTGCCGGCACCGGTACGTTCAT GCGGTTGTACGAAATGTATGTCGAACGGCCGGTATTCCCGGACGTTGACC GCGTTCTCGATGTCCTGGGACTTGGCCCGCAACGGCCGCCGGCCGGCAGC GTCGCGGCGCGCACGGCAGCGAATTTGCGTCACGCCATCATGGGTGGCGA GTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95699:3..506+

>mRNA_M-pyrifera_M_contig95699.22063.1 ID=mRNA_M-pyrifera_M_contig95699.22063.1|Name=mRNA_M-pyrifera_M_contig95699.22063.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1008bp|location=Sequence derived from alignment at M-pyrifera_M_contig95699:3..506+ (Macrocystis pyrifera P11B4 male)
TACTACCAGAACGTTCTGCGCGCACGGGCGGGATTACTGGAACCGGCCGT
CGCGTGGCAAAAGCTCGCGTCCGGATTCGCGCGTGGCCGCCAGCAGACCA
CCGGCAAGCGCTCGCTCGTTGATGCGACGGATACGCTGATGCACGCCCGA
CAGTACATGCGCGTGTACTGGAGCGGCGCGGCGATTGCGCTGATCGCCGA
CGTCGAATTACGCCAGCGAACGCATGGCGCGATGTCGCTCGACCGCGTGC
TCGACGAACTCGCTCAGTGCTGCCTGCCGACGCAGGATCGCTGGCGGCCC
TCGGCGCTGATGGAAAAAATGGACGCGATTGCCGGCACCGGTACGTTCAT
GCGGTTGTACGAAATGTATGTCGAACGGCCGGTATTCCCGGACGTTGACC
GCGTTCTCGATGTCCTGGGACTTGGCCCGCAACGGCCGCCGGCCGGCAGC
GTCGCGGCGCGCACGGCAGCGAATTTGCGTCACGCCATCATGGGTGGCGA
GTGATACTACCAGAACGTTCTGCGCGCACGGGCGGGATTACTGGAACCGG
CCGTCGCGTGGCAAAAGCTCGCGTCCGGATTCGCGCGTGGCCGCCAGCAG
ACCACCGGCAAGCGCTCGCTCGTTGATGCGACGGATACGCTGATGCACGC
CCGACAGTACATGCGCGTGTACTGGAGCGGCGCGGCGATTGCGCTGATCG
CCGACGTCGAATTACGCCAGCGAACGCATGGCGCGATGTCGCTCGACCGC
GTGCTCGACGAACTCGCTCAGTGCTGCCTGCCGACGCAGGATCGCTGGCG
GCCCTCGGCGCTGATGGAAAAAATGGACGCGATTGCCGGCACCGGTACGT
TCATGCGGTTGTACGAAATGTATGTCGAACGGCCGGTATTCCCGGACGTT
GACCGCGTTCTCGATGTCCTGGGACTTGGCCCGCAACGGCCGCCGGCCGG
CAGCGTCGCGGCGCGCACGGCAGCGAATTTGCGTCACGCCATCATGGGTG
GCGAGTGA
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