mRNA_M-pyrifera_M_contig95645.22056.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95645.22056.1
Unique NamemRNA_M-pyrifera_M_contig95645.22056.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig95645.22056.1 vs. uniprot
Match: A0A316ZJ41_9BASI (Post-GPI attachment to proteins factor 3 n=1 Tax=Tilletiopsis washingtonensis TaxID=58919 RepID=A0A316ZJ41_9BASI)

HSP 1 Score: 64.7 bits (156), Expect = 2.060e-10
Identity = 29/54 (53.70%), Postives = 43/54 (79.63%), Query Frame = 1
Query:   22 KLPLLLSLLLLAGSLEVFDFPPLLHDTLDSHALWHLATIPLTVGWYNFVGDDTQ 183
            KL L++ LL+LA SLE+FDFPP++   LD+HALWHLAT+P+   WY+++ +D +
Sbjct:  375 KLQLIIGLLVLATSLELFDFPPIMR-ALDAHALWHLATVPIASLWYDWLVEDAR 427          
BLAST of mRNA_M-pyrifera_M_contig95645.22056.1 vs. uniprot
Match: A0A1D2AF85_AUXPR (Post-GPI attachment to proteins factor 3 n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2AF85_AUXPR)

HSP 1 Score: 63.2 bits (152), Expect = 6.630e-10
Identity = 33/61 (54.10%), Postives = 39/61 (63.93%), Query Frame = 1
Query:    1 STRPYAWKLPLLLSLLLLAGSLEVFDFPPLLHDTLDSHALWHLATIPLTVGWYNFVGDDTQ 183
            +T P    L + ++ L  A  LEV DFPPLL  TLD+HA+WHLATIPL   WY FV  D Q
Sbjct:  280 ATHPSRRSLLVFIASLNAASLLEVLDFPPLLWHTLDAHAVWHLATIPLWALWYRFVLLDLQ 340          
BLAST of mRNA_M-pyrifera_M_contig95645.22056.1 vs. uniprot
Match: A0A0D2ZZ13_BRAOL (Post-GPI attachment to proteins factor 3 n=2 Tax=Brassica TaxID=3705 RepID=A0A0D2ZZ13_BRAOL)

HSP 1 Score: 58.5 bits (140), Expect = 2.030e-9
Identity = 27/67 (40.30%), Postives = 42/67 (62.69%), Query Frame = 1
Query:    1 STRPYAWKLPLLLSLLLLAGSLEVFDFPPLLHDTLDSHALWHLATIPLTVGWYNFVGDDTQFELALI 201
            S  P  WKL +++    LA   E+ DFPP      D+H++WH+AT+PLT+ W+NF+ DD +F  + +
Sbjct:   29 SGHPSNWKLWVVVIASGLAMLSEIHDFPPY-GGYFDAHSIWHIATVPLTILWWNFIRDDDEFRTSSL 94          
BLAST of mRNA_M-pyrifera_M_contig95645.22056.1 vs. uniprot
Match: J5QMT9_TRIAS (Post-GPI attachment to proteins factor 3 n=2 Tax=Trichosporon asahii var. asahii TaxID=189963 RepID=J5QMT9_TRIAS)

HSP 1 Score: 61.6 bits (148), Expect = 2.350e-9
Identity = 34/69 (49.28%), Postives = 46/69 (66.67%), Query Frame = 1
Query:    1 STRPYAWKLPLLLSLLLLAG-SLEVFDFPPLLHDTLDSHALWHLATIPLTVGWYNFVGDDTQFELALIG 204
            S RP     P +L+LL  A  SLE+ DFPP+L   +D+H+LWHLATIPL++ W++F+  DT    AL G
Sbjct:  285 SKRPKGAFTPPILTLLTTAAMSLELLDFPPILR-AIDAHSLWHLATIPLSMAWWDFLVRDTNDLQALTG 352          
BLAST of mRNA_M-pyrifera_M_contig95645.22056.1 vs. uniprot
Match: A0A0L6V3J7_9BASI (Post-GPI attachment to proteins factor 3 n=1 Tax=Puccinia sorghi TaxID=27349 RepID=A0A0L6V3J7_9BASI)

HSP 1 Score: 61.6 bits (148), Expect = 2.480e-9
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 1
Query:    4 TRPYAWKLPLLLSLLLLAGSLEVFDFPPLLHDTLDSHALWHLATIPLTVGWY---NFVGDDTQFELALI 201
            T PY  K  + L +L+ AGSLE+ DFPPL + +LD+HALWHLATIPL  GW     F+  D Q+E   +
Sbjct:  358 TPPYVSKPIIPLVVLIGAGSLELLDFPPLWNMSLDAHALWHLATIPL--GWIWCVGFLALDAQWESRFV 424          
BLAST of mRNA_M-pyrifera_M_contig95645.22056.1 vs. uniprot
Match: UPI001F4F34B2 (post-GPI attachment to proteins factor 3 n=2 Tax=Schistocerca TaxID=7008 RepID=UPI001F4F34B2)

HSP 1 Score: 61.2 bits (147), Expect = 2.960e-9
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 1
Query:    7 RPYAWKLPLLLSLLLLAGSLEVFDFPPLLHDTLDSHALWHLATIPLTVGWYNFVGDD 177
            +PY W+  L + L  L+  LE+ DFPPLL  TLD+HALWHLAT+PL + +Y F+ +D
Sbjct:  249 QPYVWRCALFVVLAGLSLLLEIADFPPLLW-TLDAHALWHLATVPLPILFYRFLIED 304          
BLAST of mRNA_M-pyrifera_M_contig95645.22056.1 vs. uniprot
Match: UPI001F5F81F4 (post-GPI attachment to proteins factor 3 isoform X1 n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5F81F4)

HSP 1 Score: 61.2 bits (147), Expect = 3.330e-9
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 1
Query:    7 RPYAWKLPLLLSLLLLAGSLEVFDFPPLLHDTLDSHALWHLATIPLTVGWYNFVGDD 177
            +PY W+  L + L  L+  LE+ DFPPLL  TLD+HALWHLAT+PL + +Y F+ +D
Sbjct:  322 QPYVWRCALFVVLAGLSLLLEIADFPPLLW-TLDAHALWHLATVPLPILFYRFLIED 377          
BLAST of mRNA_M-pyrifera_M_contig95645.22056.1 vs. uniprot
Match: A0A0L0TDL2_ALLM3 (Post-GPI attachment to proteins factor 3 n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0TDL2_ALLM3)

HSP 1 Score: 60.5 bits (145), Expect = 5.150e-9
Identity = 30/57 (52.63%), Postives = 37/57 (64.91%), Query Frame = 1
Query:    7 RPYAWKLPLLLSLLLLAGSLEVFDFPPLLHDTLDSHALWHLATIPLTVGWYNFVGDD 177
            RPYA    L + L L A  LEV DF P+  +T+D+HALWHLAT+PL   WY F+  D
Sbjct:  225 RPYARDALLFVVLFLTASLLEVGDFAPVCWETVDTHALWHLATVPLIPLWYRFLVAD 281          
BLAST of mRNA_M-pyrifera_M_contig95645.22056.1 vs. uniprot
Match: S8G818_FOMPI (Post-GPI attachment to proteins factor 3 n=1 Tax=Fomitopsis pinicola (strain FP-58527) TaxID=743788 RepID=S8G818_FOMPI)

HSP 1 Score: 60.5 bits (145), Expect = 5.780e-9
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    1 STRP-YAWKLPLLLSLLLLAGSLEVFDFPPLLHDTLDSHALWHLATIPLTVGWYNFVGDD 177
            S RP YA    L   L +LA SLE+FDFPP     +D+H+LWHLAT+P+TV WY+F+  D
Sbjct:  265 SYRPSYATAAALFAILTILATSLELFDFPPW-GRVIDAHSLWHLATVPITVYWYDFLLSD 323          
BLAST of mRNA_M-pyrifera_M_contig95645.22056.1 vs. uniprot
Match: G8B9J7_CANPC (Post-GPI attachment to proteins factor 3 n=1 Tax=Candida parapsilosis (strain CDC 317 / ATCC MYA-4646) TaxID=578454 RepID=G8B9J7_CANPC)

HSP 1 Score: 60.5 bits (145), Expect = 6.100e-9
Identity = 26/49 (53.06%), Postives = 40/49 (81.63%), Query Frame = 1
Query:   28 PLLLSLLLLAGS-LEVFDFPPLLHDTLDSHALWHLATI-PLTVGWYNFV 168
            PL+L ++++ GS LE+FDFPP+ HD +D+H+LWHL TI P  +GWY+++
Sbjct:  295 PLMLCMIVVLGSMLEIFDFPPIFHDLVDAHSLWHLVTIIPPYMGWYDWL 343          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95645.22056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A316ZJ41_9BASI2.060e-1053.70Post-GPI attachment to proteins factor 3 n=1 Tax=T... [more]
A0A1D2AF85_AUXPR6.630e-1054.10Post-GPI attachment to proteins factor 3 n=2 Tax=A... [more]
A0A0D2ZZ13_BRAOL2.030e-940.30Post-GPI attachment to proteins factor 3 n=2 Tax=B... [more]
J5QMT9_TRIAS2.350e-949.28Post-GPI attachment to proteins factor 3 n=2 Tax=T... [more]
A0A0L6V3J7_9BASI2.480e-950.72Post-GPI attachment to proteins factor 3 n=1 Tax=P... [more]
UPI001F4F34B22.960e-952.63post-GPI attachment to proteins factor 3 n=2 Tax=S... [more]
UPI001F5F81F43.330e-952.63post-GPI attachment to proteins factor 3 isoform X... [more]
A0A0L0TDL2_ALLM35.150e-952.63Post-GPI attachment to proteins factor 3 n=1 Tax=A... [more]
S8G818_FOMPI5.780e-953.33Post-GPI attachment to proteins factor 3 n=1 Tax=F... [more]
G8B9J7_CANPC6.100e-953.06Post-GPI attachment to proteins factor 3 n=1 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95645contigM-pyrifera_M_contig95645:58..285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score72.8
Seed ortholog evalue7.8e-11
Seed eggNOG ortholog78898.MVEG_01566T0
Hectar predicted targeting categorysignal peptide
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006875,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0019538,GO:0019637,GO:0019725,GO:0030003,GO:0030026,GO:0031090,GO:0031224,GO:0031984,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0046916,GO:0048878,GO:0050801,GO:0055065,GO:0055071,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0071704,GO:0090407,GO:0098588,GO:0098771,GO:0098805,GO:0098827,GO:0098852,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903509
EggNOG free text desc.Mn2 homeostasis protein
EggNOG OGs39RGE@33154,3NWWT@4751,COG5237@1,KOG2970@2759
COG Functional cat.S
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Exons1
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816870.938755-CDS-M-pyrifera_M_contig95645:57..2851622816870.938755-CDS-M-pyrifera_M_contig95645:57..285Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95645 58..285 +
1692278227.2895696-CDS-M-pyrifera_M_contig95645:57..2851692278227.2895696-CDS-M-pyrifera_M_contig95645:57..285Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95645 58..285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95645.22056.1prot_M-pyrifera_M_contig95645.22056.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95645 58..285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95645.22056.1

>prot_M-pyrifera_M_contig95645.22056.1 ID=prot_M-pyrifera_M_contig95645.22056.1|Name=mRNA_M-pyrifera_M_contig95645.22056.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
STRPYAWKLPLLLSLLLLAGSLEVFDFPPLLHDTLDSHALWHLATIPLTV
GWYNFVGDDTQFELALIGERKRRRRR
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mRNA from alignment at M-pyrifera_M_contig95645:58..285+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95645.22056.1 ID=mRNA_M-pyrifera_M_contig95645.22056.1|Name=mRNA_M-pyrifera_M_contig95645.22056.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig95645:58..285+ (Macrocystis pyrifera P11B4 male)
TCCACCCGCCCTTACGCTTGGAAACTGCCCCTTCTCCTCTCCCTGCTCCT CCTCGCAGGGAGTCTCGAAGTCTTCGACTTCCCTCCTCTCCTCCACGACA CACTCGATTCCCATGCGCTGTGGCACCTCGCCACCATTCCCCTCACCGTG GGCTGGTACAACTTCGTCGGCGACGACACCCAGTTTGAGCTCGCCCTCAT CGGCGAAAGAAAACGCCGAAGGAGGAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95645:58..285+

>mRNA_M-pyrifera_M_contig95645.22056.1 ID=mRNA_M-pyrifera_M_contig95645.22056.1|Name=mRNA_M-pyrifera_M_contig95645.22056.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig95645:58..285+ (Macrocystis pyrifera P11B4 male)
TCCACCCGCCCTTACGCTTGGAAACTGCCCCTTCTCCTCTCCCTGCTCCT
CCTCGCAGGGAGTCTCGAAGTCTTCGACTTCCCTCCTCTCCTCCACGACA
CACTCGATTCCCATGCGCTGTGGCACCTCGCCACCATTCCCCTCACCGTG
GGCTGGTACAACTTCGTCGGCGACGACACCCAGTTTGAGCTCGCCCTCAT
CGGCGAAAGAAAACGCCGAAGGAGGAGGTCCACCCGCCCTTACGCTTGGA
AACTGCCCCTTCTCCTCTCCCTGCTCCTCCTCGCAGGGAGTCTCGAAGTC
TTCGACTTCCCTCCTCTCCTCCACGACACACTCGATTCCCATGCGCTGTG
GCACCTCGCCACCATTCCCCTCACCGTGGGCTGGTACAACTTCGTCGGCG
ACGACACCCAGTTTGAGCTCGCCCTCATCGGCGAAAGAAAACGCCGAAGG
AGGAGG
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