mRNA_M-pyrifera_M_contig95638.22054.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95638.22054.1
Unique NamemRNA_M-pyrifera_M_contig95638.22054.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig95638.22054.1 vs. uniprot
Match: A0A812LWS9_SYMPI (Peptidyl-prolyl cis-trans isomerase n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812LWS9_SYMPI)

HSP 1 Score: 193 bits (491), Expect = 2.530e-59
Identity = 93/138 (67.39%), Postives = 106/138 (76.81%), Query Frame = 1 
Query:    1 NFRALCTGEKGEGKAGKPLHFKGCAFHRIIPGFMAQGGDFTNXXXXXXXXXXXXXXXXXXXAVKHDKPFLLSMANAGPGTNGSQFFITFKETPHLDGKHVVFGEVVDGFD-VVQALEDVGSSSGQPSKEAVITDCGVL 411
            NFRALCTGEKGEGKAGKPLH+KGC+FHRIIP FM QGGDFT+                    VKH KP LLSMANAGPGTNGSQFF+T KETPHLDGKHVVFGEV++G+D VV+ +E+VG +SG PSK+ +I DCG L
Sbjct:  145 NFRALCTGEKGEGKAGKPLHYKGCSFHRIIPRFMCQGGDFTHGNGTGGESIYGEKFADENFRVKHTKPGLLSMANAGPGTNGSQFFLTVKETPHLDGKHVVFGEVLEGYDEVVKKMEEVGQTSGTPSKKVLIEDCGEL 282
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BLAST of mRNA_M-pyrifera_M_contig95638.22054.1 vs. uniprot
Match: A0A7S3VVS8_9SPIT (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3VVS8_9SPIT)

HSP 1 Score: 184 bits (467), Expect = 2.280e-57
Identity = 90/138 (65.22%), Postives = 102/138 (73.91%), Query Frame = 1 
Query:    1 NFRALCTGEKGEGKAGKPLHFKGCAFHRIIPGFMAQGGDFTNXXXXXXXXXXXXXXXXXXXAVKHDKPFLLSMANAGPGTNGSQFFITFKETPHLDGKHVVFGEVVDGFD-VVQALEDVGSSSGQPSKEAVITDCGVL 411
            NFRALCTGEKGEGKAGKPLH+KGC FHRIIPGFM QGGDFT                     +KH +  LLSMANAG GTNGSQFF+T K TPHLDGKHVVFGEV++G++ VV+ +E+VGSS G  SK+ VI DCGVL
Sbjct:   18 NFRALCTGEKGEGKAGKPLHYKGCGFHRIIPGFMCQGGDFTIGDGSGGESIYGEKFEDENFKLKHTRTGLLSMANAGKGTNGSQFFLTVKATPHLDGKHVVFGEVLEGYEKVVKKMEEVGSSGGDTSKKVVIDDCGVL 155
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BLAST of mRNA_M-pyrifera_M_contig95638.22054.1 vs. uniprot
Match: A0A812NJV3_9DINO (CypB protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812NJV3_9DINO)

HSP 1 Score: 192 bits (488), Expect = 5.170e-57
Identity = 93/138 (67.39%), Postives = 106/138 (76.81%), Query Frame = 1 
Query:    1 NFRALCTGEKGEGKAGKPLHFKGCAFHRIIPGFMAQGGDFTNXXXXXXXXXXXXXXXXXXXAVKHDKPFLLSMANAGPGTNGSQFFITFKETPHLDGKHVVFGEVVDGFD-VVQALEDVGSSSGQPSKEAVITDCGVL 411
            NFRALCTGEKGEGKAGKPLH+KGC+FHRIIP FM QGGDFT+                    VKH KP LLSMANAGPGTNGSQFF+T KETPHLDGKHVVFGEV++G++ VV+  E+VG+SSG PSK+ +I DCG L
Sbjct:  310 NFRALCTGEKGEGKAGKPLHYKGCSFHRIIPRFMCQGGDFTHGNGTGGESIYGEKFADENFRVKHTKPGLLSMANAGPGTNGSQFFLTVKETPHLDGKHVVFGEVLEGYEEVVKKTEEVGTSSGAPSKKVLIEDCGEL 447
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BLAST of mRNA_M-pyrifera_M_contig95638.22054.1 vs. uniprot
Match: A0A7S1FDP1_NOCSC (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1FDP1_NOCSC)

HSP 1 Score: 182 bits (462), Expect = 6.110e-55
Identity = 102/137 (74.45%), Postives = 108/137 (78.83%), Query Frame = 1 
Query:    1 NFRALCTGEKGEGKAGKPLHFKGCAFHRIIPGFMAQGGDFTNXXXXXXXXXXXXXXXXXXXAVKHDKPFLLSMANAGPGTNGSQFFITFKETPHLDGKHVVFGEVVDGFDVVQALEDVGSSSGQPSKEAVITDCGVL 411
            NFRALCTGEKG G  GKPLH+KGCAFHR+IPGFM QGGDFT  XXXXXXXXXXXX       +KH K  LLSMANAG  TNGSQFF+T K TPHLDGKHVVFGEVVDG DVV  +E VGSSSG  S+  VI DCGVL
Sbjct:  146 NFRALCTGEKGVGALGKPLHYKGCAFHRVIPGFMCQGGDFTAGXXXXXXXXXXXXFPDENFKIKHTKTCLLSMANAGKDTNGSQFFLTTKSTPHLDGKHVVFGEVVDGNDVVSKVEAVGSSSGSTSQAVVIVDCGVL 282
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BLAST of mRNA_M-pyrifera_M_contig95638.22054.1 vs. uniprot
Match: A0A7S4C7R6_9EUGL (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4C7R6_9EUGL)

HSP 1 Score: 182 bits (461), Expect = 9.160e-55
Identity = 103/137 (75.18%), Postives = 115/137 (83.94%), Query Frame = 1 
Query:    1 NFRALCTGEKGEGKAGKPLHFKGCAFHRIIPGFMAQGGDFTNXXXXXXXXXXXXXXXXXXXAVKHDKPFLLSMANAGPGTNGSQFFITFKETPHLDGKHVVFGEVVDGFDVVQALEDVGSSSGQPSKEAVITDCGVL 411
            NFRALCTGEKGEGK+GKPLH+KG +FHR+IP FM QGGDFT  XXXXXXXXXXXXXXX   +VKH K  LLSMANAGPGTNGSQFF+T   T HLDGKHVVFGEVV+G+D+V+ +E VGSSSG+ SK  VI DCG L
Sbjct:  146 NFRALCTGEKGEGKSGKPLHYKGSSFHRVIPNFMCQGGDFTAGXXXXXXXXXXXXXXXENFSVKHHKEGLLSMANAGPGTNGSQFFLTTTITSHLDGKHVVFGEVVEGYDIVKKIEGVGSSSGKTSKTVVIADCGEL 282
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BLAST of mRNA_M-pyrifera_M_contig95638.22054.1 vs. uniprot
Match: A0A267DRM2_9PLAT (Peptidyl-prolyl cis-trans isomerase n=5 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267DRM2_9PLAT)

HSP 1 Score: 178 bits (451), Expect = 9.360e-55
Identity = 87/135 (64.44%), Postives = 95/135 (70.37%), Query Frame = 1 
Query:    1 NFRALCTGEKGEGKAGKPLHFKGCAFHRIIPGFMAQGGDFTNXXXXXXXXXXXXXXXXXXXAVKHDKPFLLSMANAGPGTNGSQFFITFKETPHLDGKHVVFGEVVDGFDVVQALEDVGSSSGQPSKEAVITDCG 405
            NFR LCTGEKG GK+GKPLH+KG  FHRIIP FM QGGDFT                    A KH+KPFLLSMANAGP TNGSQFFIT   TP LDGKHVVFGEV+ G DVV+ +E +GS SG+PSK  VI DCG
Sbjct:   33 NFRCLCTGEKGMGKSGKPLHYKGSGFHRIIPQFMCQGGDFTRGNGTGGESIYGEKFEDEKFARKHEKPFLLSMANAGPNTNGSQFFITTVSTPWLDGKHVVFGEVISGDDVVKKMEALGSQSGKPSKTVVIADCG 167
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BLAST of mRNA_M-pyrifera_M_contig95638.22054.1 vs. uniprot
Match: A0A7S4UW93_9DINO (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Alexandrium TaxID=2924 RepID=A0A7S4UW93_9DINO)

HSP 1 Score: 182 bits (462), Expect = 1.010e-54
Identity = 101/138 (73.19%), Postives = 112/138 (81.16%), Query Frame = 1 
Query:    1 NFRALCTGEKGEGKAGKPLHFKGCAFHRIIPGFMAQGGDFTNXXXXXXXXXXXXXXXXXXXAVKHDKPFLLSMANAGPGTNGSQFFITFKETPHLDGKHVVFGEVVDGF-DVVQALEDVGSSSGQPSKEAVITDCGVL 411
            NFRALCTGEKG+GK GKPLH+KGCAFHRIIP FM QGGDFT+ XXXXXXXXXXXX       +KH K  LLSMAN G  TN SQFFIT KETPHLDGKHVVFGEV++G+ +VV+ +E+VGSS G PSKE VI DCG L
Sbjct:  163 NFRALCTGEKGDGKLGKPLHYKGCAFHRIIPAFMCQGGDFTSGXXXXXXXXXXXXFADESFKIKHTKAGLLSMANCGRDTNNSQFFITVKETPHLDGKHVVFGEVLEGYAEVVKKMEEVGSSGGTPSKEVVIADCGEL 300
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BLAST of mRNA_M-pyrifera_M_contig95638.22054.1 vs. uniprot
Match: A0A0G4H2N5_9ALVE (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H2N5_9ALVE)

HSP 1 Score: 177 bits (449), Expect = 3.020e-54
Identity = 89/137 (64.96%), Postives = 93/137 (67.88%), Query Frame = 1 
Query:    1 NFRALCTGEKGEGKAGKPLHFKGCAFHRIIPGFMAQGGDFTNXXXXXXXXXXXXXXXXXXXAVKHDKPFLLSMANAGPGTNGSQFFITFKETPHLDGKHVVFGEVVDGFDVVQALEDVGSSSGQPSKEAVITDCGVL 411
            NFRALCTGEKG G  GK LHFKG  FHRIIPGFM QGGDFT                     VKHDKP+LLSMANAGP TNGSQFFIT   TP LDGKHVVFGEV DG  VVQ +E+ GS SG  SK  VI+DCG L
Sbjct:   47 NFRALCTGEKGAGTEGKALHFKGSKFHRIIPGFMCQGGDFTRGNGTGGESIYGRKFADEGFPVKHDKPYLLSMANAGPNTNGSQFFITVAATPWLDGKHVVFGEVKDGASVVQQMEECGSRSGTTSKPVVISDCGQL 183
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BLAST of mRNA_M-pyrifera_M_contig95638.22054.1 vs. uniprot
Match: A0A7S3N319_9SPIT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Strombidium inclinatum TaxID=197538 RepID=A0A7S3N319_9SPIT)

HSP 1 Score: 177 bits (450), Expect = 3.190e-54
Identity = 89/137 (64.96%), Postives = 98/137 (71.53%), Query Frame = 1 
Query:    1 NFRALCTGEKGEGKAGKPLHFKGCAFHRIIPGFMAQGGDFTNXXXXXXXXXXXXXXXXXXXAVKHDKPFLLSMANAGPGTNGSQFFITFKETPHLDGKHVVFGEVVDGFDVVQALEDVGSSSGQPSKEAVITDCGVL 411
            NF ALCTGEKG GK+GKPLHFK   FHRIIPGFMAQGGDFT                     +KH KPFLLSMANAGP TNGSQFFITF  T  LDG+HVVFGEV++G DVV+ALE +GS SG+ SK+AVI D G L
Sbjct:   57 NFAALCTGEKGTGKSGKPLHFKDSHFHRIIPGFMAQGGDFTMGDGRGGESIFGEKFKDENFQLKHTKPFLLSMANAGPNTNGSQFFITFAPTAWLDGRHVVFGEVIEGQDVVKALEKIGSQSGKTSKKAVIVDSGEL 193
[Close]
BLAST of mRNA_M-pyrifera_M_contig95638.22054.1 vs. uniprot
Match: C1FFD7_MICCC (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FFD7_MICCC)

HSP 1 Score: 179 bits (453), Expect = 4.390e-54
Identity = 88/138 (63.77%), Postives = 98/138 (71.01%), Query Frame = 1 
Query:    1 NFRALCTGEKGEGKAGKPLHFKGCAFHRIIPGFMAQGGDFTNXXXXXXXXXXXXXXXXXXXAVKHDKPFLLSMANAGPGTNGSQFFITFKETPHLDGKHVVFGEVVDGFD-VVQALEDVGSSSGQPSKEAVITDCGVL 411
            NFRALCTGEKGEGK GKPLH+KG +FHR+IP FM QGGDFT                     VKH KP LLSMANAGPGTNGSQFFIT  ETPHLDGKHVVFGEV +G++ VV+  E++GS  G+  KE VI DCG L
Sbjct:  105 NFRALCTGEKGEGKMGKPLHYKGSSFHRVIPNFMCQGGDFTAGNGTGGESIYGEKFADENFRVKHTKPGLLSMANAGPGTNGSQFFITVTETPHLDGKHVVFGEVCEGYEEVVKKCEELGSGGGKTEKEIVIDDCGEL 242
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95638.22054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812LWS9_SYMPI2.530e-5967.39Peptidyl-prolyl cis-trans isomerase n=3 Tax=Symbio... [more]
A0A7S3VVS8_9SPIT2.280e-5765.22Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A812NJV3_9DINO5.170e-5767.39CypB protein n=3 Tax=Symbiodinium TaxID=2949 RepID... [more]
A0A7S1FDP1_NOCSC6.110e-5574.45Peptidyl-prolyl cis-trans isomerase n=1 Tax=Noctil... [more]
A0A7S4C7R6_9EUGL9.160e-5575.18Peptidyl-prolyl cis-trans isomerase n=1 Tax=Eutrep... [more]
A0A267DRM2_9PLAT9.360e-5564.44Peptidyl-prolyl cis-trans isomerase n=5 Tax=Macros... [more]
A0A7S4UW93_9DINO1.010e-5473.19Peptidyl-prolyl cis-trans isomerase n=2 Tax=Alexan... [more]
A0A0G4H2N5_9ALVE3.020e-5464.96Peptidyl-prolyl cis-trans isomerase n=1 Tax=Chrome... [more]
A0A7S3N319_9SPIT3.190e-5464.96Peptidyl-prolyl cis-trans isomerase n=1 Tax=Stromb... [more]
C1FFD7_MICCC4.390e-5463.77Peptidyl-prolyl cis-trans isomerase n=1 Tax=Microm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95638contigM-pyrifera_M_contig95638:298..708 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score182.6
Seed ortholog evalue1.3e-43
Seed eggNOG ortholog296587.XP_002499678.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Peptidyl-prolyl cis-trans isomerase
EggNOG OGs34KNH@3041,37ZS4@33090,COG0652@1,KOG0865@2759
COG Functional cat.O
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size411
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816870.8577898-CDS-M-pyrifera_M_contig95638:297..7081622816870.8577898-CDS-M-pyrifera_M_contig95638:297..708Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95638 298..708 -
1692278227.2460682-CDS-M-pyrifera_M_contig95638:297..7081692278227.2460682-CDS-M-pyrifera_M_contig95638:297..708Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95638 298..708 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95638.22054.1prot_M-pyrifera_M_contig95638.22054.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95638 298..708 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95638.22054.1

>prot_M-pyrifera_M_contig95638.22054.1 ID=prot_M-pyrifera_M_contig95638.22054.1|Name=mRNA_M-pyrifera_M_contig95638.22054.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
NFRALCTGEKGEGKAGKPLHFKGCAFHRIIPGFMAQGGDFTNGDGTGGES
IFGEKFADENFAVKHDKPFLLSMANAGPGTNGSQFFITFKETPHLDGKHV
VFGEVVDGFDVVQALEDVGSSSGQPSKEAVITDCGVL
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mRNA from alignment at M-pyrifera_M_contig95638:298..708-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95638.22054.1 ID=mRNA_M-pyrifera_M_contig95638.22054.1|Name=mRNA_M-pyrifera_M_contig95638.22054.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig95638:298..708- (Macrocystis pyrifera P11B4 male)
AATTTCCGAGCGCTGTGCACGGGCGAGAAAGGGGAGGGGAAGGCGGGAAA
GCCGCTGCACTTCAAGGGCTGTGCCTTCCACCGCATCATCCCGGGCTTCA
TGGCGCAGGGAGGAGATTTTACCAACGGCGACGGCACTGGCGGAGAGTCG
ATTTTCGGCGAAAAGTTTGCAGACGAAAACTTTGCAGTCAAGCACGACAA
GCCTTTCCTCCTCTCCATGGCCAACGCGGGGCCAGGCACCAACGGATCCC
AATTCTTCATCACCTTCAAGGAAACCCCACACCTCGACGGCAAGCACGTC
GTGTTCGGAGAAGTCGTTGACGGGTTTGATGTCGTCCAGGCGCTAGAAGA
CGTCGGATCCTCCTCCGGACAACCCTCCAAAGAAGCCGTCATCACAGACT
GCGGCGTGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95638:298..708-

>mRNA_M-pyrifera_M_contig95638.22054.1 ID=mRNA_M-pyrifera_M_contig95638.22054.1|Name=mRNA_M-pyrifera_M_contig95638.22054.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig95638:298..708- (Macrocystis pyrifera P11B4 male)
AATTTCCGAGCGCTGTGCACGGGCGAGAAAGGGGAGGGGAAGGCGGGAAA
GCCGCTGCACTTCAAGGGCTGTGCCTTCCACCGCATCATCCCGGGCTTCA
TGGCGCAGGGAGGAGATTTTACCAACGGCGACGGCACTGGCGGAGAGTCG
ATTTTCGGCGAAAAGTTTGCAGACGAAAACTTTGCAGTCAAGCACGACAA
GCCTTTCCTCCTCTCCATGGCCAACGCGGGGCCAGGCACCAACGGATCCC
AATTCTTCATCACCTTCAAGGAAACCCCACACCTCGACGGCAAGCACGTC
GTGTTCGGAGAAGTCGTTGACGGGTTTGATGTCGTCCAGGCGCTAGAAGA
CGTCGGATCCTCCTCCGGACAACCCTCCAAAGAAGCCGTCATCACAGACT
GCGGCGTGCTCAATTTCCGAGCGCTGTGCACGGGCGAGAAAGGGGAGGGG
AAGGCGGGAAAGCCGCTGCACTTCAAGGGCTGTGCCTTCCACCGCATCAT
CCCGGGCTTCATGGCGCAGGGAGGAGATTTTACCAACGGCGACGGCACTG
GCGGAGAGTCGATTTTCGGCGAAAAGTTTGCAGACGAAAACTTTGCAGTC
AAGCACGACAAGCCTTTCCTCCTCTCCATGGCCAACGCGGGGCCAGGCAC
CAACGGATCCCAATTCTTCATCACCTTCAAGGAAACCCCACACCTCGACG
GCAAGCACGTCGTGTTCGGAGAAGTCGTTGACGGGTTTGATGTCGTCCAG
GCGCTAGAAGACGTCGGATCCTCCTCCGGACAACCCTCCAAAGAAGCCGT
CATCACAGACTGCGGCGTGCTC
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