mRNA_M-pyrifera_M_contig95546.22027.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95546.22027.1
Unique NamemRNA_M-pyrifera_M_contig95546.22027.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig95546.22027.1 vs. uniprot
Match: W4HCS8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HCS8_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.840e-19
Identity = 44/88 (50.00%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:    1 SLQFQHFVELASYLAQLSGRDFVVDELDDPNTIVANLMAELRDAGFEADFPAMKLRQAHGEAVCRVLNFLSDLALHAREFRFAAPEFP 264
            S QF+ F+E+  YL ++  +DFVVD+ DDPNT V  L+  L+  GF  DFPA KL+Q  GEAVC  L F+ D AL A+ F +A P +P
Sbjct:   69 SAQFKSFLEIVVYLMKVCEQDFVVDKYDDPNTSVNKLILSLKIMGFPLDFPAAKLKQGFGEAVCSTLEFICDKALAAKGFAWAKPNYP 156
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BLAST of mRNA_M-pyrifera_M_contig95546.22027.1 vs. uniprot
Match: A0A397AAJ3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AAJ3_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.850e-19
Identity = 44/88 (50.00%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:    1 SLQFQHFVELASYLAQLSGRDFVVDELDDPNTIVANLMAELRDAGFEADFPAMKLRQAHGEAVCRVLNFLSDLALHAREFRFAAPEFP 264
            S QF+ F+E+  YL ++  +DFVVD+ DDPNT V  L+  L+  GF  DFPA KL+Q  GEAVC  L F+ D AL A+ F +A P +P
Sbjct:  366 SAQFKSFLEIVVYLMKVCEQDFVVDKYDDPNTSVNKLILSLKIMGFPLDFPAAKLKQGFGEAVCSTLEFICDKALAAKGFAWAKPNYP 453
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BLAST of mRNA_M-pyrifera_M_contig95546.22027.1 vs. uniprot
Match: A0A024UQ58_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQ58_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.480e-19
Identity = 43/88 (48.86%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:    1 SLQFQHFVELASYLAQLSGRDFVVDELDDPNTIVANLMAELRDAGFEADFPAMKLRQAHGEAVCRVLNFLSDLALHAREFRFAAPEFP 264
            S QF+ F+++  +L ++  +DFVVD+ DDPNT V  L+  L+  GF  DFPA KL+Q +GEAVC  L F+ D AL AR F +A P +P
Sbjct:   69 SAQFKSFLDVVVFLMKVCEQDFVVDKYDDPNTSVNKLILSLKILGFPLDFPAAKLKQGYGEAVCTTLEFICDKALAARGFAWAKPNYP 156
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BLAST of mRNA_M-pyrifera_M_contig95546.22027.1 vs. uniprot
Match: A0A7S1CNR1_9STRA (Hypothetical protein n=2 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CNR1_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.960e-19
Identity = 42/87 (48.28%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    4 LQFQHFVELASYLAQLSGRDFVVDELDDPNTIVANLMAELRDAGFEADFPAMKLRQAHGEAVCRVLNFLSDLALHAREFRFAAPEFP 264
            +QF  F++L  +L +    +F  D+ DDPNT    +M EL+  GF+ DFPA KL+QAHGEAV RVL+FL+D AL  + F +A P +P
Sbjct:   90 MQFSDFLDLVIWLMRRCEHEFTTDKYDDPNTTTNKMMLELKSMGFDMDFPASKLKQAHGEAVVRVLSFLADQALALQGFHWAKPTYP 176
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BLAST of mRNA_M-pyrifera_M_contig95546.22027.1 vs. uniprot
Match: A0A6G0XEZ7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XEZ7_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 4.660e-19
Identity = 43/88 (48.86%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:    1 SLQFQHFVELASYLAQLSGRDFVVDELDDPNTIVANLMAELRDAGFEADFPAMKLRQAHGEAVCRVLNFLSDLALHAREFRFAAPEFP 264
            S QF+  +E+  YL ++  +DFVVD+ DDPNT V  L+  L+  GF  DFPA KL+Q +GEAVC  L F+ D AL A+ F +A P +P
Sbjct:   68 SAQFKSLLEIVVYLMKICEQDFVVDKYDDPNTSVNKLILALKMMGFPLDFPAAKLKQGYGEAVCTTLEFICDKALAAKGFAWAKPNYP 155
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BLAST of mRNA_M-pyrifera_M_contig95546.22027.1 vs. uniprot
Match: A0A1V9ZM18_9STRA (Intraflagellar Transport Protein 57 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZM18_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 7.100e-19
Identity = 43/88 (48.86%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:    1 SLQFQHFVELASYLAQLSGRDFVVDELDDPNTIVANLMAELRDAGFEADFPAMKLRQAHGEAVCRVLNFLSDLALHAREFRFAAPEFP 264
            S Q++ FV+L  +L +L  ++FVVD+ DDPNT V  L+  L+  GF  DFPA KL+Q +GEAVC  L F+ D AL AR F +  P++P
Sbjct:   69 SAQWKSFVDLVVFLMKLCEQEFVVDKYDDPNTSVNKLILALKMMGFSLDFPATKLKQGYGEAVCAALEFICDKALAARGFNWTKPKYP 156
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BLAST of mRNA_M-pyrifera_M_contig95546.22027.1 vs. uniprot
Match: T0QS21_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QS21_SAPDV)

HSP 1 Score: 87.8 bits (216), Expect = 1.770e-18
Identity = 42/86 (48.84%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:    7 QFQHFVELASYLAQLSGRDFVVDELDDPNTIVANLMAELRDAGFEADFPAMKLRQAHGEAVCRVLNFLSDLALHAREFRFAAPEFP 264
            QF+ F+EL  +L ++  +DFVVD+ DDPNT V  L+  L+  GF  DFPA KL+Q +GEAVC  L F+ D AL A+ F +  P++P
Sbjct:   72 QFKGFLELVVFLMKVCEQDFVVDKYDDPNTSVNKLILALKIMGFPLDFPAAKLKQGYGEAVCSALEFICDKALAAKGFSWTKPKYP 157
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BLAST of mRNA_M-pyrifera_M_contig95546.22027.1 vs. uniprot
Match: A0A1W0A3K6_9STRA (Deoxyribose-phosphate aldolase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A3K6_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 8.970e-18
Identity = 41/87 (47.13%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    1 SLQFQHFVELASYLAQLSGRDFVVDELDDPNTIVANLMAELRDAGFEADFPAMKLRQAHGEAVCRVLNFLSDLALHAREFRFAAPEF 261
            S QF+ F+EL  YL +++ ++FVVD+ DDPNT V  L+  L+  GF  DFPA KL+Q +GEAVC  L F+ D AL  + F +  P++
Sbjct:  628 SAQFKSFLELVVYLMKIAEQEFVVDKYDDPNTSVNKLILALKIMGFTLDFPAAKLKQGYGEAVCSALEFICDKALAVKSFCWTKPKY 714
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BLAST of mRNA_M-pyrifera_M_contig95546.22027.1 vs. uniprot
Match: A0A2R5GPT4_9STRA (Protein kinase, putative n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GPT4_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.310e-17
Identity = 41/86 (47.67%), Postives = 55/86 (63.95%), Query Frame = 1 
Query:    7 QFQHFVELASYLAQLSGRDFVVDELDDPNTIVANLMAELRDAGFEADFPAMKLRQAHGEAVCRVLNFLSDLALHAREFRFAAPEFP 264
            Q+   + L S+L    G DF VD+ DDPNT    +M  L+  GFE DFP  +L+QA+GE+VC VL+FL+D  L  R FRF  P++P
Sbjct:  911 QWVSLLGLVSWLIAELGGDFTVDKYDDPNTSANKMMLTLKKLGFEPDFPVSRLKQAYGESVCSVLDFLADKLLKKRGFRFREPQYP 996
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BLAST of mRNA_M-pyrifera_M_contig95546.22027.1 vs. uniprot
Match: A0A7S2VU57_9EUKA (Hypothetical protein n=1 Tax=Norrisiella sphaerica TaxID=552664 RepID=A0A7S2VU57_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 8.890e-15
Identity = 43/87 (49.43%), Postives = 53/87 (60.92%), Query Frame = 1 
Query:    1 SLQFQHFVELASYLAQLSGRDFVV--DELDDPNTIVANLMAELRDAGFEADFPAMKLRQAHGEAVCRVLNFLSDLALHAREFRFAAP 255
            S QF +F  LA +L  +SG DFV   D  +DPN+I  ++++E    GF ADFP  KLR   G+AVC VLNFLSD AL    F   AP
Sbjct:   59 SEQFPYFAALAGWLLTVSGIDFVKWSDFDEDPNSISQSVLSECERLGFRADFPVSKLRHGSGDAVCAVLNFLSDCALKKMGFAVVAP 145
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95546.22027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
W4HCS8_9STRA1.840e-1950.00Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A397AAJ3_9STRA2.850e-1950.00Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A024UQ58_9STRA3.480e-1948.86Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A7S1CNR1_9STRA3.960e-1948.28Hypothetical protein n=2 Tax=Bicosoecida sp. CB-20... [more]
A0A6G0XEZ7_9STRA4.660e-1948.86Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9ZM18_9STRA7.100e-1948.86Intraflagellar Transport Protein 57 n=1 Tax=Achlya... [more]
T0QS21_SAPDV1.770e-1848.84Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1W0A3K6_9STRA8.970e-1847.13Deoxyribose-phosphate aldolase n=1 Tax=Thraustothe... [more]
A0A2R5GPT4_9STRA2.310e-1747.67Protein kinase, putative n=1 Tax=Hondaea fermental... [more]
A0A7S2VU57_9EUKA8.890e-1549.43Hypothetical protein n=1 Tax=Norrisiella sphaerica... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95546contigM-pyrifera_M_contig95546:462..725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.0
Seed ortholog evalue3.8e-17
Seed eggNOG ortholog653948.CCA14836
Preferred nameIFT57
KEGG koko:K04638
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0001654,GO:0001754,GO:0001838,GO:0001841,GO:0001843,GO:0001894,GO:0001895,GO:0001947,GO:0002009,GO:0003002,GO:0003007,GO:0003143,GO:0003341,GO:0003351,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0005930,GO:0006810,GO:0006915,GO:0006919,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0007610,GO:0007635,GO:0008104,GO:0008150,GO:0008219,GO:0008285,GO:0009653,GO:0009790,GO:0009792,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009893,GO:0009966,GO:0009987,GO:0010604,GO:0010646,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0010970,GO:0012501,GO:0012505,GO:0014020,GO:0015630,GO:0016043,GO:0016331,GO:0019222,GO:0021915,GO:0022008,GO:0022607,GO:0023051,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030162,GO:0030182,GO:0030425,GO:0030705,GO:0030990,GO:0030992,GO:0031323,GO:0031325,GO:0031503,GO:0032006,GO:0032268,GO:0032270,GO:0032391,GO:0032501,GO:0032502,GO:0032838,GO:0032991,GO:0033036,GO:0035050,GO:0035148,GO:0035239,GO:0035295,GO:0035720,GO:0035721,GO:0035735,GO:0035869,GO:0036064,GO:0036477,GO:0042073,GO:0042127,GO:0042221,GO:0042461,GO:0042462,GO:0042592,GO:0042981,GO:0042995,GO:0043005,GO:0043009,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043280,GO:0043281,GO:0044085,GO:0044093,GO:0044292,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0045494,GO:0045862,GO:0046530,GO:0046907,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048583,GO:0048592,GO:0048598,GO:0048646,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0048871,GO:0050678,GO:0050680,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051716,GO:0052547,GO:0052548,GO:0060249,GO:0060255,GO:0060271,GO:0060429,GO:0060562,GO:0060606,GO:0060972,GO:0061371,GO:0065007,GO:0065008,GO:0065009,GO:0070925,GO:0071840,GO:0072175,GO:0072359,GO:0080090,GO:0090596,GO:0097014,GO:0097447,GO:0097458,GO:0097542,GO:0097730,GO:0097731,GO:0097733,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902531,GO:1905515,GO:2000116,GO:2001056
EggNOG free text desc.intraciliary transport
EggNOG OGsKOG0972@1,KOG0972@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons1
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816869.2797217-CDS-M-pyrifera_M_contig95546:461..7251622816869.2797217-CDS-M-pyrifera_M_contig95546:461..725Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95546 462..725 +
1692278226.2236848-CDS-M-pyrifera_M_contig95546:461..7251692278226.2236848-CDS-M-pyrifera_M_contig95546:461..725Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95546 462..725 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95546.22027.1prot_M-pyrifera_M_contig95546.22027.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95546 462..725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95546.22027.1

>prot_M-pyrifera_M_contig95546.22027.1 ID=prot_M-pyrifera_M_contig95546.22027.1|Name=mRNA_M-pyrifera_M_contig95546.22027.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
SLQFQHFVELASYLAQLSGRDFVVDELDDPNTIVANLMAELRDAGFEADF
PAMKLRQAHGEAVCRVLNFLSDLALHAREFRFAAPEFP
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mRNA from alignment at M-pyrifera_M_contig95546:462..725+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95546.22027.1 ID=mRNA_M-pyrifera_M_contig95546.22027.1|Name=mRNA_M-pyrifera_M_contig95546.22027.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig95546:462..725+ (Macrocystis pyrifera P11B4 male)
AGTTTGCAGTTCCAGCATTTCGTGGAGTTGGCATCTTACTTGGCTCAGTT
GAGCGGTCGCGATTTCGTGGTGGATGAGTTGGACGATCCGAACACGATCG
TTGCGAATTTGATGGCAGAGTTGCGAGATGCGGGGTTTGAGGCTGATTTC
CCTGCGATGAAGCTGCGTCAGGCGCATGGGGAGGCGGTGTGTCGTGTGTT
GAACTTTCTCTCGGATTTGGCGCTGCACGCCCGCGAATTTCGCTTCGCTG
CCCCCGAGTTTCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95546:462..725+

>mRNA_M-pyrifera_M_contig95546.22027.1 ID=mRNA_M-pyrifera_M_contig95546.22027.1|Name=mRNA_M-pyrifera_M_contig95546.22027.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig95546:462..725+ (Macrocystis pyrifera P11B4 male)
AGTTTGCAGTTCCAGCATTTCGTGGAGTTGGCATCTTACTTGGCTCAGTT
GAGCGGTCGCGATTTCGTGGTGGATGAGTTGGACGATCCGAACACGATCG
TTGCGAATTTGATGGCAGAGTTGCGAGATGCGGGGTTTGAGGCTGATTTC
CCTGCGATGAAGCTGCGTCAGGCGCATGGGGAGGCGGTGTGTCGTGTGTT
GAACTTTCTCTCGGATTTGGCGCTGCACGCCCGCGAATTTCGCTTCGCTG
CCCCCGAGTTTCCGAGTTTGCAGTTCCAGCATTTCGTGGAGTTGGCATCT
TACTTGGCTCAGTTGAGCGGTCGCGATTTCGTGGTGGATGAGTTGGACGA
TCCGAACACGATCGTTGCGAATTTGATGGCAGAGTTGCGAGATGCGGGGT
TTGAGGCTGATTTCCCTGCGATGAAGCTGCGTCAGGCGCATGGGGAGGCG
GTGTGTCGTGTGTTGAACTTTCTCTCGGATTTGGCGCTGCACGCCCGCGA
ATTTCGCTTCGCTGCCCCCGAGTTTCCG
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