mRNA_M-pyrifera_M_contig9550.22015.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9550.22015.1
Unique NamemRNA_M-pyrifera_M_contig9550.22015.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig9550.22015.1 vs. uniprot
Match: A0A6H5KPF3_9PHAE (GH16 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPF3_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 1.810e-74
Identity = 107/141 (75.89%), Postives = 128/141 (90.78%), Query Frame = 1 
Query:    1 RDGRTFHDGRDPRWTALNKNDYTNHALQFYSHDKVQTRNGSLILTTVNEDVEFQYYDTPKRTYKTMKKSYVSGMVQTWNKFCFTGGIVEIKARLPGTASVGGLWPAMWLMGNLARATYTSSSDFTWPWSYSKCNRSTDEEA 423
            R+GRTF+DGRDPRW A++KNDYTN ALQFYSHD  +TR+G+L++TT N DVEFQYYDTP + YK+M K+YVSGM+Q+W+KFCFTGGIVEI+A LPG   +GGLWPAMWLMGNLARATYT+SSDFTWPWSY+KCNR+TDE+A
Sbjct:   95 REGRTFNDGRDPRWMAMHKNDYTNAALQFYSHDMCETRDGALVITTNNTDVEFQYYDTPHKKYKSMAKTYVSGMLQSWDKFCFTGGIVEIRAILPGRPDIGGLWPAMWLMGNLARATYTASSDFTWPWSYNKCNRTTDEQA 235
[Close]
BLAST of mRNA_M-pyrifera_M_contig9550.22015.1 vs. uniprot
Match: A0A835ZJH7_9STRA (Beta-1,6-glucan active enzyme, family GH16 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJH7_9STRA)

HSP 1 Score: 203 bits (516), Expect = 4.180e-59
Identity = 92/141 (65.25%), Postives = 111/141 (78.72%), Query Frame = 1 
Query:    1 RDGRTFHDGRDPRWTALNKNDYTNHALQFYSHDKVQTRNGSLILTTVNEDVEFQYYDTPKRTYKTMKKSYVSGMVQTWNKFCFTGGIVEIKARLPGTASVGGLWPAMWLMGNLARATYTSSSDFTWPWSYSKCNRSTDEEA 423
            +DGR F DG DPRW AL+KNDYTN ALQFY+ D V T +G L +TT NEDV F+Y+D   R YK M K+Y SGMV  WNKFCF GG+VE+ A LPG A +GGLWPA+WL+GNLARATYT SSD+TWPWSY++CNR++ + A
Sbjct:   57 KDGRAFEDGMDPRWGALHKNDYTNAALQFYAKDAVTTTDGFLKVTTTNEDVTFKYWDDDARGYKHMTKNYKSGMVMGWNKFCFKGGVVEVSAALPGQAYIGGLWPAIWLLGNLARATYTGSSDYTWPWSYNECNRTSAQTA 197
[Close]
BLAST of mRNA_M-pyrifera_M_contig9550.22015.1 vs. uniprot
Match: A0A7S1YFE9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YFE9_9STRA)

HSP 1 Score: 188 bits (478), Expect = 1.170e-54
Identity = 83/133 (62.41%), Postives = 103/133 (77.44%), Query Frame = 1 
Query:    4 DGRTFHDGRDPRWTALNKNDYTNHALQFYSHDKVQTRNGSLILTTVNEDVEFQYYDTPKRTYKTMKKSYVSGMVQTWNKFCFTGGIVEIKARLPGTASVGGLWPAMWLMGNLARATYTSSSDFTWPWSYSKCN 402
            DGRTFHDGRDPRWTA+NKNDYTN AL FYSHD ++T NG+L +T+  +   ++ +D  K+T+   KK   SGM+Q WNKFC TGGI+E  ARLPG    GGLWPA+WL+GNLARATY  SSD+ WP+SYS+C+
Sbjct:  100 DGRTFHDGRDPRWTAINKNDYTNAALHFYSHDNIRTNNGTLNITSERKTNTYKAFDEKKKTFYADKKFIQSGMLQGWNKFCMTGGIIEFNARLPGDPFTGGLWPALWLLGNLARATYVGSSDYMWPYSYSQCS 232
[Close]
BLAST of mRNA_M-pyrifera_M_contig9550.22015.1 vs. uniprot
Match: A0A835YPV8_9STRA (Beta-1,6-glucan active enzyme, family GH16 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPV8_9STRA)

HSP 1 Score: 185 bits (470), Expect = 1.520e-53
Identity = 85/126 (67.46%), Postives = 98/126 (77.78%), Query Frame = 1 
Query:   46 ALNKNDYTNHALQFYSHDKVQTRNGSLILTTVNEDVEFQYYDTPKRTYKTMKKSYVSGMVQTWNKFCFTGGIVEIKARLPGTASVGGLWPAMWLMGNLARATYTSSSDFTWPWSYSKCNRSTDEEA 423
            A  KNDYTN AL +Y  DKV T NG L +TT NED+EF Y+D   + +KTM K Y SGMVQ WNKFCFTGGIVE+ A LPG A +GGLWPA+WL+GNLARATYTSSSD+TWPWSY +C+RS  E A
Sbjct:   56 ATTKNDYTNAALHYYHKDKVTTTNGYLNITTTNEDIEFDYWDERAKRFKTMTKVYKSGMVQGWNKFCFTGGIVEVSAALPGEAYIGGLWPAIWLLGNLARATYTSSSDYTWPWSYDRCDRSDAEHA 181
[Close]
BLAST of mRNA_M-pyrifera_M_contig9550.22015.1 vs. uniprot
Match: A0A7S3P470_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P470_9STRA)

HSP 1 Score: 186 bits (471), Expect = 6.260e-53
Identity = 83/133 (62.41%), Postives = 101/133 (75.94%), Query Frame = 1 
Query:    4 DGRTFHDGRDPRWTALNKNDYTNHALQFYSHDKVQTRNGSLILTTVNEDVEFQYYDTPKRTYKTMKKSYVSGMVQTWNKFCFTGGIVEIKARLPGTASVGGLWPAMWLMGNLARATYTSSSDFTWPWSYSKCN 402
            +GRTFHDG DPRWTA+NKNDYTN AL FYSHD V T NG L +TT N    ++ +D  K+ +   KK   +GMVQ+WNKFCF GGIVE  A+LPG   VGGLWPA+W++GNLARATY  SSDF WP+SY++C+
Sbjct:   62 EGRTFHDGNDPRWTAINKNDYTNSALHFYSHDNVNTTNGVLNITTENRVNAYKAFDEDKKQFYVDKKYAQTGMVQSWNKFCFVGGIVEFSAKLPGDPGVGGLWPALWMLGNLARATYVGSSDFMWPFSYNQCD 194
[Close]
BLAST of mRNA_M-pyrifera_M_contig9550.22015.1 vs. uniprot
Match: A0A7S2W6G7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6G7_9STRA)

HSP 1 Score: 179 bits (455), Expect = 2.620e-52
Identity = 85/134 (63.43%), Postives = 98/134 (73.13%), Query Frame = 1 
Query:    4 DGRTFHDGRDPRWTALNKNDYTNHALQFYSHDKVQTRNGSLILTTVNEDVEFQYYDTPKRTYKTMKKSYVSGMVQTWNKFCFTGGIVEIKARLPGTASVGGLWPAMWLMGNLARATYTSSSDFTWPWSYSKCNR 405
            D R+F DG DPRWTAL+KNDYTN ALQFY    V T +G L +TTV E  EF  +D     Y   KK + S MVQ WNKFCFTGGI+E+KA LPG A VGGLWPA+WLMGNLARATY  SS++ WPWS+ KC+R
Sbjct:   57 DHRSFGDGEDPRWTALHKNDYTNTALQFYDKHLVTTSHGMLNITTVPETTEFLAFDDDTMKYHRSKKHFKSAMVQGWNKFCFTGGILEVKALLPGEAYVGGLWPAIWLMGNLARATYVGSSNWMWPWSFDKCSR 190
[Close]
BLAST of mRNA_M-pyrifera_M_contig9550.22015.1 vs. uniprot
Match: A0A7S2BXI5_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BXI5_9STRA)

HSP 1 Score: 183 bits (464), Expect = 5.020e-52
Identity = 83/134 (61.94%), Postives = 99/134 (73.88%), Query Frame = 1 
Query:    4 DGRTFHDGRDPRWTALNKNDYTNHALQFYSHDKVQTRNGSLILTTVNEDVEFQYYDTPKRTYKTMKKSYVSGMVQTWNKFCFTGGIVEIKARLPGTASVGGLWPAMWLMGNLARATYTSSSDFTWPWSYSKCNR 405
            D R+F DG DP WTAL K+DYTN AL +YS   VQTR G + +TT  E+ + +  +   +TYKT  K + SGMVQTWNKFCFTGGIVE++A LPG  + GGLWPA+WLMGNLARATY  SSD+ WPWSY  CNR
Sbjct:    2 DDRSFDDGHDPAWTALEKDDYTNGALHYYSATNVQTRGGVMNITTSAENTKIKVLNKDMKTYKTQTKHFKSGMVQTWNKFCFTGGIVEVRAALPGLPNTGGLWPAIWLMGNLARATYVGSSDWVWPWSYDTCNR 135
[Close]
BLAST of mRNA_M-pyrifera_M_contig9550.22015.1 vs. uniprot
Match: A0A7S2KNS3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KNS3_9STRA)

HSP 1 Score: 171 bits (434), Expect = 1.370e-51
Identity = 76/133 (57.14%), Postives = 95/133 (71.43%), Query Frame = 1 
Query:    4 DGRTFHDGRDPRWTALNKNDYTNHALQFYSHDKVQTRNGSLILTTVNEDVEFQYYDTPKRTYKTMKKSYVSGMVQTWNKFCFTGGIVEIKARLPGTASVGGLWPAMWLMGNLARATYTSSSDFTWPWSYSKCN 402
            DGR+F DG DPRWTA++KNDYTN AL FY  + VQT NG L +TT  +  +++ +D  K  Y    K   SGMVQ WNKFC TGGI+E  A+LPG    GGLWPA+W++GNLARATY  SS+F WP+SY +C+
Sbjct:   65 DGRSFEDGADPRWTAIDKNDYTNEALHFYKPENVQTTNGVLNITTTQKSNKYKAFDEDKHKYYADAKHIQSGMVQGWNKFCLTGGIIEFNAKLPGDPKTGGLWPALWMLGNLARATYVGSSNFIWPYSYDECD 197
[Close]
BLAST of mRNA_M-pyrifera_M_contig9550.22015.1 vs. uniprot
Match: A0A7S2UJ77_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UJ77_9STRA)

HSP 1 Score: 169 bits (429), Expect = 9.410e-51
Identity = 74/133 (55.64%), Postives = 98/133 (73.68%), Query Frame = 1 
Query:    4 DGRTFHDGRDPRWTALNKNDYTNHALQFYSHDKVQTRNGSLILTTVNEDVEFQYYDTPKRTYKTMKKSYVSGMVQTWNKFCFTGGIVEIKARLPGTASVGGLWPAMWLMGNLARATYTSSSDFTWPWSYSKCN 402
            +GR+F DG DP+WTA+NKNDYTN AL FYS D  +  NG + +TT  +  E++ ++   + +   KK   SGM+Q WNKFC TGGIVE +A+LPG +  GGLWPA+W++GNLARATY  SSDF WP+SY++CN
Sbjct:   79 EGRSFADGEDPKWTAINKNDYTNDALHFYSSDNARVTNGVMNITTEEKVNEYRAFNEKTKKFYADKKHIQSGMLQGWNKFCLTGGIVEFRAKLPGDSGTGGLWPALWMLGNLARATYVGSSDFMWPYSYNQCN 211
[Close]
BLAST of mRNA_M-pyrifera_M_contig9550.22015.1 vs. uniprot
Match: A0A7S2W5Y4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W5Y4_9STRA)

HSP 1 Score: 179 bits (455), Expect = 1.060e-50
Identity = 85/134 (63.43%), Postives = 98/134 (73.13%), Query Frame = 1 
Query:    4 DGRTFHDGRDPRWTALNKNDYTNHALQFYSHDKVQTRNGSLILTTVNEDVEFQYYDTPKRTYKTMKKSYVSGMVQTWNKFCFTGGIVEIKARLPGTASVGGLWPAMWLMGNLARATYTSSSDFTWPWSYSKCNR 405
            D R+F DG DPRWTAL+KNDYTN ALQFY    V T +G L +TTV E  EF  +D     Y   KK + S MVQ WNKFCFTGGI+E+KA LPG A VGGLWPA+WLMGNLARATY  SS++ WPWS+ KC+R
Sbjct:   57 DHRSFGDGEDPRWTALHKNDYTNTALQFYDKHLVTTSHGMLNITTVPETTEFLAFDDDTMKYHRSKKHFKSAMVQGWNKFCFTGGILEVKALLPGEAYVGGLWPAIWLMGNLARATYVGSSNWMWPWSFDKCSR 190
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9550.22015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPF3_9PHAE1.810e-7475.89GH16 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835ZJH7_9STRA4.180e-5965.25Beta-1,6-glucan active enzyme, family GH16 n=1 Tax... [more]
A0A7S1YFE9_9STRA1.170e-5462.41Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A835YPV8_9STRA1.520e-5367.46Beta-1,6-glucan active enzyme, family GH16 n=1 Tax... [more]
A0A7S3P470_9STRA6.260e-5362.41Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S2W6G7_9STRA2.620e-5263.43Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2BXI5_9STRA5.020e-5261.94Hypothetical protein n=2 Tax=Florenciella parvula ... [more]
A0A7S2KNS3_9STRA1.370e-5157.14Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S2UJ77_9STRA9.410e-5155.64Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S2W5Y4_9STRA1.060e-5063.43Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9550contigM-pyrifera_M_contig9550:244..3684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score249.2
Seed ortholog evalue1.1e-63
Seed eggNOG ortholog2880.D7FT08
Preferred nameKRE6
KEGG koko:K21850
Hectar predicted targeting categoryother localisation
GOsGO:0000271,GO:0003674,GO:0003824,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0005933,GO:0005935,GO:0005975,GO:0005976,GO:0006073,GO:0006077,GO:0006078,GO:0006629,GO:0006643,GO:0006665,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0012505,GO:0015926,GO:0016020,GO:0016021,GO:0016043,GO:0016051,GO:0016787,GO:0016798,GO:0030133,GO:0030148,GO:0030176,GO:0030427,GO:0031224,GO:0031227,GO:0031410,GO:0031505,GO:0031982,GO:0031984,GO:0033692,GO:0034637,GO:0034645,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045229,GO:0046467,GO:0051273,GO:0051274,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071852,GO:0071944,GO:0097708,GO:0098827,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.(1->6)-beta-D-glucan biosynthetic process
EggNOG OGs2QR13@2759,COG2273@1
COG Functional cat.G
CAZyGH16
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons3
Model size426
Cds size426
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9550.22015.1prot_M-pyrifera_M_contig9550.22015.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9550 244..3684 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816868.7646835-CDS-M-pyrifera_M_contig9550:243..4411622816868.7646835-CDS-M-pyrifera_M_contig9550:243..441Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9550 244..441 -
1692278225.9361255-CDS-M-pyrifera_M_contig9550:243..4411692278225.9361255-CDS-M-pyrifera_M_contig9550:243..441Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9550 244..441 -
1622816868.7777905-CDS-M-pyrifera_M_contig9550:1487..16131622816868.7777905-CDS-M-pyrifera_M_contig9550:1487..1613Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9550 1488..1613 -
1692278225.948787-CDS-M-pyrifera_M_contig9550:1487..16131692278225.948787-CDS-M-pyrifera_M_contig9550:1487..1613Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9550 1488..1613 -
1622816868.7891572-CDS-M-pyrifera_M_contig9550:3582..36841622816868.7891572-CDS-M-pyrifera_M_contig9550:3582..3684Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9550 3583..3684 -
1692278225.9581382-CDS-M-pyrifera_M_contig9550:3582..36841692278225.9581382-CDS-M-pyrifera_M_contig9550:3582..3684Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9550 3583..3684 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9550.22015.1

>prot_M-pyrifera_M_contig9550.22015.1 ID=prot_M-pyrifera_M_contig9550.22015.1|Name=mRNA_M-pyrifera_M_contig9550.22015.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
RDGRTFHDGRDPRWTALNKNDYTNHALQFYSHDKVQTRNGSLILTTVNED
VEFQYYDTPKRTYKTMKKSYVSGMVQTWNKFCFTGGIVEIKARLPGTASV
GGLWPAMWLMGNLARATYTSSSDFTWPWSYSKCNRSTDEEA*
back to top

mRNA from alignment at M-pyrifera_M_contig9550:244..3684-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9550.22015.1 ID=mRNA_M-pyrifera_M_contig9550.22015.1|Name=mRNA_M-pyrifera_M_contig9550.22015.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3441bp|location=Sequence derived from alignment at M-pyrifera_M_contig9550:244..3684- (Macrocystis pyrifera P11B4 male)
AGAGACGGAAGAACGTTTCACGACGGGCGAGATCCTCGTTGGACAGCACT
CAACAAAAATGATTACACCAACCACGCGCTGCAGTTCTACAGCCACGACA
AGGTGAGGTTTTCATTTTTTGTTTTTTTAGAGGCGTCAGCTGTGAGTTTG
ACCGATTTGAGTGGCCAATGCTGAGATGAATCGTTCGTACTGAGCTTTGT
CGTGCTTATCGAATGAGAATCGAGTGCGATGCTGCTGCTGTATTGTGTTT
TTATGAAACTGGTGTATCGGTATAGAGAAGGGAAAATTGACGCGAGATCG
ATAGAGGATATCGAGTTCGATCCTGCTGCTGTATTTTAATAAACTGTATC
GCTACGTATGTAGATGGAAAAGAAAGCGATACGAGATCGGTATTGAACTG
AGACAGATCAGATAGATCGTCTATTTACGGGGGACCATAGTAAATAGGAC
CTACGATACACACAAAAACCTATATATTTACCCGTTTATACTAACATTAT
TTGGTCCTATATACTGTGGTCCCCCGTAATAGACCCTTGCCTGCTGCTAT
AAGATGCGGTGCAGGATCTACTCTAGACGGCGGTTTGATCGCTTGACTGA
CCGTCCCCTACTATTAAAGTAGTATATCAAGGCCAAAAGAAGGCCTTCAC
GCGTCAAGACCGATCTAGACCGCAGTTTGATCCCTTGACTGACCGCCGTT
ACACTGAACATAGTATAGTAATGTATGGCTGAAAAGAGTCTTGGAGCGCC
CGAAATGACCCGTCTAGACCGCGATTTGACCCTTTGACCGGCCGCCCCAA
CACTGAAACTACTATAATAAGACCAAAAGAAGCGTTGACGGGTCAAAAAT
GACCGGTCTAGACCGCGGTTTGACCCTGTGATTGACCGCCCCCTACACTA
ACGCTAGTATTATAAGGCCAAAAGAGGCCTCGACGCGCCCGAAAACACTG
TCCCGGATTTAATATTTGGCATGTTTGCTGCTGCATGATGCACTGTCCTT
TTATGTTGGTGTTGATGTGGGGAGGGGACTATTGTTTGACAGTACAGTAT
AGGGCGACGTATAAGAAAGAGCCTAGACCAAGAGCATTAGGCTCATCTTT
TGAGGAACGCTAAGGAAATTGGATGAAGAAAGTGTGCTCAGCGGCGAGTT
CTACACCAAAAAACACTTCCATGTATATAAGAGCCTTTGCTCATGGTTGT
TCAAGGATAGAGTCACACTAACGCTCTCAGGGCTTGCTCATATCAGGTGT
TTGTTGTTAGCAAGCCCACGCTGTACCAGGTATTATAGTTACTATAGGCG
TGGGTCGAAACGGCTCGAGAGTGTGCTACCACTCTGGCCGGCAATAATGT
TCCTTGTCGGGGTCTCGTATCGGCCAGTCGGCAATATCATGGCGGGTTTT
GAAACGGCTCGAGCGTGTGCTACCTACCACTCTGGCCAGCAATATGGTTC
CTGGCCGGGGTCTTGTATCGACCAGTAGGCGTTATCATGGCGTGCTTTGA
AACGGTTCGAATATGTGCTATCACTCTGGCCCGCAATATTGTTCCTGGCC
GGGGTCTCGTATCGGCCAGCAGGCGTTATCATGGCGCGCTTTGAAACGGT
TCGAATGTGTGCCACCACTCCGGCGGGCAATATTGTCCCCGCTAGATATT
GTTATAGGGCTTAGATCGGGTAGGTAATTGGGTAACCTTTTCCCAGCAGC
CCAACGGACTATGGGAACGCCGCACCCGGTGTTGGTTTCGGGCATGGGGT
GCCGACAAGAAACGCCTAATCTGAGAAGTTAGTACGCCCTCACTCCTGTG
ACACCATCTTTGAACGACCTCGACCTTAAGCTAGCAGTGCAGGATTCGGT
GAAGCCCTCGCCGCTACGAGCACCGTTTTATGAATCCCGTTTTTTTTTGT
TATCGTCGTCCTCAGAATAGTGAGCTTTTGTTGTGCTGTTGTGATATTTT
TCCTTATCCGTGGGCCTTTGTAGTACCTACCCCTGTCGTCGGACGCCTTC
CAAGCGTGTGAACGCCGCGCCCGTCGTTGCTTTTTTGTTCGTGCTGACGT
GGGGCCGTCGGTAACCGGCAGGTTCAAACACGAAACGGGTCCCTGATCCT
GACCACCGTGAATGAGGATGTGGAGTTCCAGTACTACGACACCCCCAAAA
GGACGTACAAGACGATGAAAAAGTCTTACGTCAGCGGCATGGTGCAGGTG
GGAGGAGGGGGGTGGTGAGCGGTGGTGCGTGATGTTGTGGTTGGAACAAG
GGGAGGGTGTGTAGTGGTGTGGTAGAGTGGGGTCGTGGGATGGCGTGTTT
CAGGTGGGATAAGGGGATGTGATGGTGCGTCGGGGATCGCGAGGAAGTAA
AAGTGGCATGATTATGATTGGTATCCCGTGGCGTTTTTTCTTGTTTCGGG
GAATGTTTCATGTTTATTATCGATAGTGGTCAAGGCTTGAGCGAGCTCAT
GCGGCACTTTTTCGGGTGGTGAACTCGTCAGCAATATTTACGAATGGGGG
GGTTAACACATGCCGTTATACACGGCACCGACTCTCAGAGTAAGATACCG
GGACACAGGCCCAGGATAGACTTATCAGTTAAGGGAAATTCTCGCTTGCC
AAAGGGTGTCTTCCCCCACTGACTCCGGTGTAGCCACTTACACCCGTTCC
AGAATGTCTTGTTTTCCCGGAATTGTTATTGCATGCGGTATTAAGGCTGA
CTTTGTTGCGGGGCCCTTTAGTACGCAAGGGCAGTATCGTACTACTACTA
CTACGTATTTGAGTTGAGGATTATTACGACATGACCCAGCTTGGACGAAA
GGGCTTAATAGTCCACAGCAACTTCTGGTCACATGAACCATCTTAGTTCA
AGGAAATTCCCGAGCGGTCGGGGTTCGAGTGTTCTACCGTATGTACCTGG
TAGGCTTTCATAAGGTCGCGTGAATATTTCAACCGTGAGACGGTTAGATA
ATGACATCGTGCGAGACGCCGACCACATGCCGTCCAACAGAAGATGCTTT
CCCCCTCGCCCCCCCACCCCCGACCTGATCCGTCCCGGCATTGCAGGGTT
AAGAGGCATACGACTACGGCCATGCGTGGCATGAGTGCACCCTGCACCCC
TCCCCACACCTCACCCACTCTCACCCCCCCACCTCCCACCCGCCCCCCCG
ACTTCCCCCCCTTGTTACCTGCCACCCTCCTCCCCCGCCTCCCATTTCCA
CCCTCCCCTCCCCTCCCGCTGCTTCCATTCCGCGATCGTTCAGACCTGGA
ACAAATTCTGCTTTACAGGGGGCATTGTGGAAATCAAGGCGCGTTTGCCG
GGCACAGCCAGCGTTGGAGGGCTGTGGCCGGCGATGTGGCTCATGGGCAA
CCTGGCCAGAGCGACCTACACGTCGTCTTCGGACTTTACTTGGCCGTGGA
GCTACAGCAAATGCAACCGGAGCACGGACGAGGAGGCGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig9550:244..3684-

>mRNA_M-pyrifera_M_contig9550.22015.1 ID=mRNA_M-pyrifera_M_contig9550.22015.1|Name=mRNA_M-pyrifera_M_contig9550.22015.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig9550:244..3684- (Macrocystis pyrifera P11B4 male)
AGAGACGGAAGAACGTTTCACGACGGGCGAGATCCTCGTTGGACAGCACT
CAACAAAAATGATTACACCAACCACGCGCTGCAGTTCTACAGCCACGACA
AGAGAGACGGAAGAACGTTTCACGACGGGCGAGATCCTCGTTGGACAGCA
CTCAACAAAAATGATTACACCAACCACGCGCTGCAGTTCTACAGCCACGA
CAAGGTTCAAACACGAAACGGGTCCCTGATCCTGACCACCGTGAATGAGG
ATGTGGAGTTCCAGTACTACGACACCCCCAAAAGGACGTACAAGACGATG
AAAAAGTCTTACGTCAGCGGCATGGTGCAGGTTCAAACACGAAACGGGTC
CCTGATCCTGACCACCGTGAATGAGGATGTGGAGTTCCAGTACTACGACA
CCCCCAAAAGGACGTACAAGACGATGAAAAAGTCTTACGTCAGCGGCATG
GTGCAGACCTGGAACAAATTCTGCTTTACAGGGGGCATTGTGGAAATCAA
GGCGCGTTTGCCGGGCACAGCCAGCGTTGGAGGGCTGTGGCCGGCGATGT
GGCTCATGGGCAACCTGGCCAGAGCGACCTACACGTCGTCTTCGGACTTT
ACTTGGCCGTGGAGCTACAGCAAATGCAACCGGAGCACGGACGAGGAGGC
GTGAACCTGGAACAAATTCTGCTTTACAGGGGGCATTGTGGAAATCAAGG
CGCGTTTGCCGGGCACAGCCAGCGTTGGAGGGCTGTGGCCGGCGATGTGG
CTCATGGGCAACCTGGCCAGAGCGACCTACACGTCGTCTTCGGACTTTAC
TTGGCCGTGGAGCTACAGCAAATGCAACCGGAGCACGGACGAGGAGGCGT
GA
back to top