mRNA_M-pyrifera_M_contig95470.22013.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95470.22013.1
Unique NamemRNA_M-pyrifera_M_contig95470.22013.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig95470.22013.1 vs. uniprot
Match: A0A662XBQ2_9STRA (TIP120 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XBQ2_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.180e-13
Identity = 48/124 (38.71%), Postives = 69/124 (55.65%), Query Frame = 1
Query:    1 RVVDLGPFKHRVDDALPLRKAAITCLDTVLDRAEDVVDGHAMLRRLVVNLKDLPSAAVLAHQLLGKLAARQAWHRRIAAAAHPIAKALQHNLNLLSKKG--GPTAEET-DAVRSAIRTLQVLIT 363
            RVVDLGPFKH+VDD LPLRKAA +C+DT+++     +D       L + L+D     +L+HQ+L K+   Q     +  A   + + L+  LN   K+   GP  E   D +RSA+R L  + T
Sbjct: 1024 RVVDLGPFKHKVDDGLPLRKAAYSCIDTLIETLPQQLDITLFFPHLQLGLRDQDDIQMLSHQILIKICLVQPGS--VVGALDLLVEPLEKTLNKKVKEDQVGPEVERVKDLIRSALRALDAIST 1145          
BLAST of mRNA_M-pyrifera_M_contig95470.22013.1 vs. uniprot
Match: A0A7S3V237_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V237_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.400e-13
Identity = 50/154 (32.47%), Postives = 77/154 (50.00%), Query Frame = 1
Query:    1 RVVDLGPFKHRVDDALPLRKAAITCLDTVLDRAEDVVDGHAMLRRLVVNLKDLPSAAVLAHQLLGKLAARQAWH-----RRIAAAAHPIAKALQHNLNLLSKKGGPTAEETDAVRSAIRTLQVLITSIPSLADDTNIATLLSAVKANPSAAAIL 447
            R VDLGPFKH +DD LPLRKA+  C+ T +D     V+    L  L   L D+    ++ HQ++ +L +   W        ++   +P+  A+  N  +  KK        D +RSA+R L   I +IP  + + +I  L   ++A P  AA+L
Sbjct:   53 RKVDLGPFKHTIDDGLPLRKASFACMSTFIDTIPHEVNVVDFLPYLSKGLSDVNDVQMMCHQIVSQLCS---WAPVIILANVSTLLNPLTTAI--NKTVKEKKNTDVDRTNDVIRSAVRAL-FTIAAIPEASQEPSIQDLCDRIQAKPHIAAML 200          
BLAST of mRNA_M-pyrifera_M_contig95470.22013.1 vs. uniprot
Match: A0A2R5G6T4_9STRA (Cullin-associated NEDD8-dissociated protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G6T4_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 3.000e-13
Identity = 51/143 (35.66%), Postives = 74/143 (51.75%), Query Frame = 1
Query:    1 RVVDLGPFKHRVDDALPLRKAAITCLDTVLDRAEDVVDGHAMLRRLVVNLKDLPSAAVLAHQLLGKLAARQ--AWHRRIAAAAHPIAKALQHNLNLLSKKGGPTAEETDAVRSAIRTLQVLITSIPSLADDTNIATLLSAVKA 423
            R VDLGPFKH VDD LPLRKA+ +C+ T+LD   + V    +L  L   L D+    +L HQ+L ++A R        +     P+A+ L  N  +   +G       + +RSA+R L   I ++P    D  I  L++AV A
Sbjct: 1111 RTVDLGPFKHVVDDGLPLRKASFSCILTMLDTIPETVSVVDLLPHLAKGLGDVDEVQMLCHQILVQIAQRSPHVLLSEVGTILEPLAQTL--NKTVKESQGSVVNHANNEIRSALRALDA-IAAVPESHQDRRITDLVAAVLA 1250          
BLAST of mRNA_M-pyrifera_M_contig95470.22013.1 vs. uniprot
Match: A0A836CDP2_9STRA (Armadillo-type protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDP2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 6.930e-13
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = 1
Query:    1 RVVDLGPFKHRVDDALPLRKAAITCLDTVLDRAEDVVDGHAMLRRLVVNLKDL-PSAAVLAHQLLGKL 201
            RVVDLGPFKHRVDDA PLRKAA+ C+DT+LD   + +D  A++  L   L D  P    L HQ+L KL
Sbjct:  464 RVVDLGPFKHRVDDAEPLRKAALACIDTILDVMPERLDEVALMPHLAKGLADSKPDVQTLCHQILAKL 531          
BLAST of mRNA_M-pyrifera_M_contig95470.22013.1 vs. uniprot
Match: A0A0N7L7J0_PLAHL (TATA-binding protein-interacting protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L7J0_PLAHL)

HSP 1 Score: 75.5 bits (184), Expect = 7.530e-13
Identity = 57/160 (35.62%), Postives = 85/160 (53.12%), Query Frame = 1
Query:    1 RVVDLGPFKHRVDDALPLRKAAITCLDTVLDRAEDVVDGHAMLRRLVVNLKDLPSAAVLAHQLLGKLAARQAWHRRIAAAAHPIAKALQHNLNLLSKKG--GPTAEET-DAVRSAIRTLQVLITSIPSLADDTN----IATLLSAVKANPSAAAILASIR 459
            RVVDLGPFKH+VDD LPLRKAA +C++T++      +D    + +L   L DL    +L+HQ+L K+   Q     I  A   + + L+  +N   K+   GP  E   D +RSA+R L  +     S+ +D N    + T++ + K N     +L SIR
Sbjct: 1063 RVVDLGPFKHKVDDGLPLRKAAYSCVETLIQVLPQQLDISLFIDQLKRGLGDLDDIQMLSHQILIKICNVQPGS--IVGALDSLVEPLEKTINKKVKEDQVGPEIERAKDLIRSALRALDAM-----SVVNDANSHPRLNTVIESAKKNKLLCPLLDSIR 1215          
BLAST of mRNA_M-pyrifera_M_contig95470.22013.1 vs. uniprot
Match: A0A484EC75_BRELC (TIP120 domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EC75_BRELC)

HSP 1 Score: 74.7 bits (182), Expect = 1.390e-12
Identity = 53/156 (33.97%), Postives = 83/156 (53.21%), Query Frame = 1
Query:    1 RVVDLGPFKHRVDDALPLRKAAITCLDTVLDRAEDVVDGHAMLRRLVVNLKDLPSAAVLAHQLLGKLAARQAWHRRIAAAAHPIAKALQHNLNLLSKKG--GPTAEET-DAVRSAIRTLQVLITSIPSLADDTNIATLLSAVKANPSAAAILASIR 459
            RVVDLGPFKH+VDD LPLRKAA +C++T+L      +D +    +L   L D     +L+HQ+L K+   Q     I  A   +   ++  +N   K+   GP  E T D +RSA+R L   ++++        + ++++  K NP    +L +IR
Sbjct: 1064 RVVDLGPFKHKVDDGLPLRKAAYSCVETLLQLLPQQLDINLFFDQLKRGLGDQDDIQMLSHQILIKICYVQPGS--IVGALDSLIDPIEKTINKTVKEDQVGPEVERTRDLIRSALRALNA-VSAVRDTDSHPKLNSVMAYAKNNPMLGPLLETIR 1216          
BLAST of mRNA_M-pyrifera_M_contig95470.22013.1 vs. uniprot
Match: A0A2P6TZ53_CHLSO (Cullin-associated NEDD8-dissociated 1 isoform A n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TZ53_CHLSO)

HSP 1 Score: 74.3 bits (181), Expect = 1.960e-12
Identity = 46/122 (37.70%), Postives = 63/122 (51.64%), Query Frame = 1
Query:    1 RVVDLGPFKHRVDDALPLRKAAITCLDTVLDRAEDVVDGHAMLRRLVVNLKDLPSAAVLAHQLLGKLAARQAWHRRIAAAAHPIAKALQHNLNLLSKKGGPTAE---ETDAVRSAIRTLQVL 357
            R VDLGPFKH++DD L LRKAA  C+D +LDR  D VD  A ++ L   L+D      L H +L KLAA      ++ ++   + + LQ  L    K      E     D +RS +R +  L
Sbjct: 1089 RTVDLGPFKHQIDDGLELRKAAYECMDELLDRCYDRVDAAAFIQHLESGLRDHYDVKTLCHPILSKLAAMAPG--QVTSSLDRLVEPLQATLQAKVKADAVKQEIDRNEDMLRSCLRAVDAL 1208          
BLAST of mRNA_M-pyrifera_M_contig95470.22013.1 vs. uniprot
Match: A0A7S1XKT3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKT3_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.260e-12
Identity = 47/120 (39.17%), Postives = 68/120 (56.67%), Query Frame = 1
Query:    1 RVVDLGPFKHRVDDALPLRKAAITCLDTVLDRAEDVVDGHAMLRRLVVNLKD-LPSAAVLAHQLLGKLAARQAWHRRIAAAAHPIAKALQHNLNLLSKK---GGPTAEETDAVRSAIRTL 348
            RVVDLGPFKH+VDD LPLRK A++C+ T LDR  + +D  A++ +L     D      +LAHQ++ ++ A Q     +  AA  +   L+  LN   K+   G       + +RSA+RTL
Sbjct:  118 RVVDLGPFKHKVDDGLPLRKVALSCVYTGLDRVPERLDLPALMPKLAQACADKAEDMCLLAHQVVARVCAVQP--AAVLGAADAVLGPLETVLNKKQKQAQAGHEVERRNELLRSALRTL 235          
BLAST of mRNA_M-pyrifera_M_contig95470.22013.1 vs. uniprot
Match: H3HDI3_PHYRM (TIP120 domain-containing protein n=15 Tax=Peronosporaceae TaxID=4777 RepID=H3HDI3_PHYRM)

HSP 1 Score: 73.9 bits (180), Expect = 2.580e-12
Identity = 47/122 (38.52%), Postives = 67/122 (54.92%), Query Frame = 1
Query:    1 RVVDLGPFKHRVDDALPLRKAAITCLDTVLDRAEDVVDGHAMLRRLVVNLKDLPSAAVLAHQLLGKLAARQAWHRRIAAAAHPIAKALQHNLNLLSKKG--GPTAEET-DAVRSAIRTLQVL 357
            RVVDLGPFKH+VDD LPLRKAA +C+DT++      +D      +L   L D     +L+HQ+L K+   Q     I  A   + + L+  +N   K+   GP  E   D +RSA+R L+ +
Sbjct: 1063 RVVDLGPFKHKVDDGLPLRKAAYSCVDTLIQVLPQQLDISLFFDQLKRGLGDQDDVQMLSHQILIKICYVQPGS--IVGALDSLVEPLEKTINKKVKEDQVGPEVERVKDLIRSALRALEAI 1182          
BLAST of mRNA_M-pyrifera_M_contig95470.22013.1 vs. uniprot
Match: A0A7S0RLL5_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RLL5_9CHLO)

HSP 1 Score: 73.6 bits (179), Expect = 3.040e-12
Identity = 46/128 (35.94%), Postives = 67/128 (52.34%), Query Frame = 1
Query:    1 RVVDLGPFKHRVDDALPLRKAAITCLDTVLDRAEDVVDGHAMLRRLVVNLKDLPSAAVLAHQLLGKLAARQAWHRRIAAAAHPIAKALQHNLNLLSKKGGPTAEETDAVRSAIRTLQVLITSIPSLAD 384
            R VDLGPFKH VDD L LRK+A  C+DT+LD+  D +D HA L+ L   L D     +  H +L +LAA       + AA   + + L+  L    K+     +E D     +R+  + I ++  +AD
Sbjct:  328 RTVDLGPFKHIVDDGLELRKSAFECMDTLLDQCLDAIDAHAFLQHLKSGLADHYDVKLPCHLVLARLAAGAV--PAVLAALDDLVEPLEKTLAQKLKQDA-VKQEVDRNEDMLRSALLAIHALSKMAD 452          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95470.22013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A662XBQ2_9STRA1.180e-1338.71TIP120 domain-containing protein n=2 Tax=Nothophyt... [more]
A0A7S3V237_9STRA2.400e-1332.47Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A2R5G6T4_9STRA3.000e-1335.66Cullin-associated NEDD8-dissociated protein 1 n=1 ... [more]
A0A836CDP2_9STRA6.930e-1355.88Armadillo-type protein (Fragment) n=1 Tax=Tribonem... [more]
A0A0N7L7J0_PLAHL7.530e-1335.63TATA-binding protein-interacting protein n=1 Tax=P... [more]
A0A484EC75_BRELC1.390e-1233.97TIP120 domain-containing protein n=1 Tax=Bremia la... [more]
A0A2P6TZ53_CHLSO1.960e-1237.70Cullin-associated NEDD8-dissociated 1 isoform A n=... [more]
A0A7S1XKT3_9STRA2.260e-1239.17Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
H3HDI3_PHYRM2.580e-1238.52TIP120 domain-containing protein n=15 Tax=Peronosp... [more]
A0A7S0RLL5_9CHLO3.040e-1235.94Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95470contigM-pyrifera_M_contig95470:227..712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue2.6e-11
Seed eggNOG ortholog42099.EPrPV00000017120
Preferred nameCAND1
KEGG koko:K09490,ko:K17263
KEGG TC1.A.33
KEGG Pathwayko03060,ko04141,ko04918,ko05020,map03060,map04141,map04918,map05020
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000151,GO:0000909,GO:0003002,GO:0003006,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006725,GO:0006807,GO:0007049,GO:0007275,GO:0007389,GO:0008150,GO:0008152,GO:0009404,GO:0009653,GO:0009712,GO:0009719,GO:0009725,GO:0009733,GO:0009791,GO:0009987,GO:0010033,GO:0010051,GO:0010228,GO:0010265,GO:0016020,GO:0016043,GO:0016567,GO:0016999,GO:0017144,GO:0018904,GO:0018940,GO:0018958,GO:0019538,GO:0019748,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0030154,GO:0030312,GO:0030435,GO:0030582,GO:0030584,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0034293,GO:0036211,GO:0042221,GO:0042537,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043385,GO:0043412,GO:0043933,GO:0043934,GO:0043935,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0048608,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050790,GO:0050896,GO:0051321,GO:0051704,GO:0061458,GO:0065003,GO:0065007,GO:0065009,GO:0070647,GO:0071704,GO:0071840,GO:0071944,GO:0072490,GO:0075259,GO:1900570,GO:1900588,GO:1900591,GO:1900797,GO:1901360,GO:1901564,GO:1901615,GO:1902494,GO:1903046,GO:1990234
EggNOG free text desc.Cullin-associated NEDD8-dissociated protein. Source PGD
EggNOG OGs1MC5W@121069,KOG1824@1,KOG1824@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110,ko04131,ko04147
Exons1
Model size486
Cds size486
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816868.6929104-CDS-M-pyrifera_M_contig95470:226..7121622816868.6929104-CDS-M-pyrifera_M_contig95470:226..712Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95470 227..712 -
1692278225.9041283-CDS-M-pyrifera_M_contig95470:226..7121692278225.9041283-CDS-M-pyrifera_M_contig95470:226..712Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95470 227..712 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95470.22013.1prot_M-pyrifera_M_contig95470.22013.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95470 227..712 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95470.22013.1

>prot_M-pyrifera_M_contig95470.22013.1 ID=prot_M-pyrifera_M_contig95470.22013.1|Name=mRNA_M-pyrifera_M_contig95470.22013.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=162bp
RVVDLGPFKHRVDDALPLRKAAITCLDTVLDRAEDVVDGHAMLRRLVVNL
KDLPSAAVLAHQLLGKLAARQAWHRRIAAAAHPIAKALQHNLNLLSKKGG
PTAEETDAVRSAIRTLQVLITSIPSLADDTNIATLLSAVKANPSAAAILA
SIRESTAAMLT*
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mRNA from alignment at M-pyrifera_M_contig95470:227..712-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95470.22013.1 ID=mRNA_M-pyrifera_M_contig95470.22013.1|Name=mRNA_M-pyrifera_M_contig95470.22013.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig95470:227..712- (Macrocystis pyrifera P11B4 male)
CGAGTTGTAGACTTGGGCCCATTCAAGCATCGTGTGGATGACGCTCTTCC TCTCCGAAAAGCAGCCATTACCTGCCTTGATACAGTTCTAGATCGTGCAG AAGATGTTGTGGATGGACACGCAATGTTGCGTCGATTGGTAGTGAACCTC AAAGATCTTCCATCCGCAGCTGTACTTGCACACCAACTCTTAGGCAAACT TGCTGCTCGTCAAGCATGGCATCGTCGCATCGCAGCAGCTGCCCACCCTA TTGCCAAGGCACTACAACACAACCTCAATTTGCTCTCCAAAAAAGGTGGC CCAACTGCAGAAGAAACAGATGCTGTCCGTTCTGCCATACGAACTCTGCA AGTTCTCATCACATCCATCCCATCTCTCGCTGACGACACGAACATCGCAA CACTTCTTTCTGCAGTCAAGGCCAATCCAAGCGCAGCTGCAATCCTTGCA TCCATCCGCGAATCCACAGCTGCAATGTTGACGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95470:227..712-

>mRNA_M-pyrifera_M_contig95470.22013.1 ID=mRNA_M-pyrifera_M_contig95470.22013.1|Name=mRNA_M-pyrifera_M_contig95470.22013.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=972bp|location=Sequence derived from alignment at M-pyrifera_M_contig95470:227..712- (Macrocystis pyrifera P11B4 male)
CGAGTTGTAGACTTGGGCCCATTCAAGCATCGTGTGGATGACGCTCTTCC
TCTCCGAAAAGCAGCCATTACCTGCCTTGATACAGTTCTAGATCGTGCAG
AAGATGTTGTGGATGGACACGCAATGTTGCGTCGATTGGTAGTGAACCTC
AAAGATCTTCCATCCGCAGCTGTACTTGCACACCAACTCTTAGGCAAACT
TGCTGCTCGTCAAGCATGGCATCGTCGCATCGCAGCAGCTGCCCACCCTA
TTGCCAAGGCACTACAACACAACCTCAATTTGCTCTCCAAAAAAGGTGGC
CCAACTGCAGAAGAAACAGATGCTGTCCGTTCTGCCATACGAACTCTGCA
AGTTCTCATCACATCCATCCCATCTCTCGCTGACGACACGAACATCGCAA
CACTTCTTTCTGCAGTCAAGGCCAATCCAAGCGCAGCTGCAATCCTTGCA
TCCATCCGCGAATCCACAGCTGCAATGTTGACGTAACGAGTTGTAGACTT
GGGCCCATTCAAGCATCGTGTGGATGACGCTCTTCCTCTCCGAAAAGCAG
CCATTACCTGCCTTGATACAGTTCTAGATCGTGCAGAAGATGTTGTGGAT
GGACACGCAATGTTGCGTCGATTGGTAGTGAACCTCAAAGATCTTCCATC
CGCAGCTGTACTTGCACACCAACTCTTAGGCAAACTTGCTGCTCGTCAAG
CATGGCATCGTCGCATCGCAGCAGCTGCCCACCCTATTGCCAAGGCACTA
CAACACAACCTCAATTTGCTCTCCAAAAAAGGTGGCCCAACTGCAGAAGA
AACAGATGCTGTCCGTTCTGCCATACGAACTCTGCAAGTTCTCATCACAT
CCATCCCATCTCTCGCTGACGACACGAACATCGCAACACTTCTTTCTGCA
GTCAAGGCCAATCCAAGCGCAGCTGCAATCCTTGCATCCATCCGCGAATC
CACAGCTGCAATGTTGACGTAA
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