mRNA_M-pyrifera_M_contig95425.22001.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95425.22001.1
Unique NamemRNA_M-pyrifera_M_contig95425.22001.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig95425.22001.1 vs. uniprot
Match: A0A7X6P1E1_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6P1E1_9ACTN)

HSP 1 Score: 169 bits (428), Expect = 1.270e-48
Identity = 92/152 (60.53%), Postives = 106/152 (69.74%), Query Frame = 1
Query:    4 DVFEVLLHEAAHGLNAVRGVKDVSRGGRYHNARFKATAIEVGLDVEMMPPYGWAKTSMTPEALKQYAVEIADLKDAIRIARRIDDRRSAGITAGD---------GEA-GTTSPERTKSPPMSCGCGRKMRMAPSVAAQGPVHCGMCGVEFTI 429
            DVFEVLLHEAAHGLN  RGVKD SRGGRYHNA+FKATAIEVGL V  MPPYGWAKT + P  ++ Y+ EI  + D +RIARR+   RS+    GD         GE  G  +P+R K  P  CGCGRKMRMAPSV A+GPV C +C  EFT+
Sbjct:   45 DVFEVLLHEAAHGLNTSRGVKDTSRGGRYHNAKFKATAIEVGLRVGSMPPYGWAKTELAPATVEHYSSEIDRIGDEMRIARRM--TRSSVERGGDAGGPDDPTVGEVEGGGAPQRPK--PAECGCGRKMRMAPSVLARGPVVCSLCRTEFTV 192          
BLAST of mRNA_M-pyrifera_M_contig95425.22001.1 vs. uniprot
Match: A0A7J9XW56_9PSEU (Uncharacterized protein n=1 Tax=Pseudonocardiaceae bacterium TaxID=1873463 RepID=A0A7J9XW56_9PSEU)

HSP 1 Score: 126 bits (316), Expect = 1.290e-33
Identity = 66/141 (46.81%), Postives = 85/141 (60.28%), Query Frame = 1
Query:    4 DVFEVLLHEAAHGLNAVRGVKDVSRGGRYHNARFKATAIEVGLDVEMMPPYGWAKTSMTPEALKQYAVEIADLKDAIRIARRIDDRRSAGITAGDGEAGTTSPERTKSPPMSCGCGRKMRMAPSVAAQGPVHCGMCGVEFT 426
            DV   LLHEAAH L  VRG+KD SR GR+HNARFK  A EVG++    P  GW+ TS+       YA  I  L  A+R+       R+A +T G G        +TK+PP  C CGR++R+AP+V A GP+ CG+CG +FT
Sbjct:   81 DVLATLLHEAAHALADVRGIKDTSRQGRWHNARFKQLATEVGIETTEDPRIGWSPTSLPEATRADYADTITALGAALRM------HRTAEVTGGQGS-------KTKTPPCVCDCGRRIRVAPTVLAAGPITCGVCGTDFT 208          
BLAST of mRNA_M-pyrifera_M_contig95425.22001.1 vs. uniprot
Match: A0A7V9BMY9_9PSEU (Uncharacterized protein n=1 Tax=Pseudonocardiales bacterium TaxID=2201155 RepID=A0A7V9BMY9_9PSEU)

HSP 1 Score: 120 bits (302), Expect = 1.110e-31
Identity = 65/140 (46.43%), Postives = 89/140 (63.57%), Query Frame = 1
Query:    4 DVFEVLLHEAAHGLNAVRGVKDVSRGGRYHNARFKATAIEVGLDVEMMPPYGWAKTSMTPEALKQYAVEIADLKDAIRIARRIDDRRSAGITAGDGEAGTTSPERTKSPPMSCGCGRKMRMAPSVAAQGPVHCGMCGVEF 423
            DV   LLHEAAH L  VRG+KD SR GR+HNA+FKA A E+G++V   P  GW+ T++     ++YA  I +L  A+R+ R ++      I AG G A   +P     PP  CGCGRK+R++P+V A GP+ CG+CG +F
Sbjct:   47 DVLATLLHEAAHALAHVRGIKDTSRQGRWHNAKFKALAEELGIEVTKDPRIGWSPTAIPTSTRERYAEVIDELGRALRLYRSVE------IGAG-GRAKKPTP-----PPCVCGCGRKIRLSPTVLAAGPITCGVCGSDF 174          
BLAST of mRNA_M-pyrifera_M_contig95425.22001.1 vs. uniprot
Match: A0A7J9XSH8_9PSEU (Uncharacterized protein n=1 Tax=Pseudonocardiaceae bacterium TaxID=1873463 RepID=A0A7J9XSH8_9PSEU)

HSP 1 Score: 119 bits (298), Expect = 9.800e-31
Identity = 64/141 (45.39%), Postives = 83/141 (58.87%), Query Frame = 1
Query:    4 DVFEVLLHEAAHGLNAVRGVKDVSRGGRYHNARFKATAIEVGLDVEMMPPYGWAKTSMTPEALKQYAVEIADLKDAIRIARRIDDRRSAGITAGDGEAGTTSPERTKSPPMSCGCGRKMRMAPSVAAQGPVHCGMCGVEFT 426
            +V   LLHEAAH L  VRG++D SR GR+HNARFKA A EVG+ V   P  GW+ T++T +    YA  I  L  A+R+ R  D             A    P +T +PP  C CGR++R+A SV A GP+ CG+CG +FT
Sbjct:   95 EVLATLLHEAAHALAHVRGIQDTSRQGRWHNARFKALATEVGITVTKDPRLGWSPTALTADTATAYADTITALGKALRLHRATD------------AAPVRGPRKT-TPPCVCDCGRRIRVAASVLAAGPITCGLCGTDFT 222          
BLAST of mRNA_M-pyrifera_M_contig95425.22001.1 vs. uniprot
Match: A0A7J9XKH5_9PSEU (Uncharacterized protein n=1 Tax=Pseudonocardiaceae bacterium TaxID=1873463 RepID=A0A7J9XKH5_9PSEU)

HSP 1 Score: 114 bits (286), Expect = 3.470e-29
Identity = 66/141 (46.81%), Postives = 84/141 (59.57%), Query Frame = 1
Query:    4 DVFEVLLHEAAHGLNAVRGVKDVSRGGRYHNARFKATAIEVGLDVEMMPPYGWAKTSMTPEALKQYAVEIADLKDAIRIARRIDDRRSAGITAGDGEAGTTSPERTKSPPMS-CGCGRKMRMAPSVAAQGPVHCGMCGVEF 423
            DV   LLHEAAH L  VRG+KD SR GR+HNARFK  A EVG++    P  GW+ T++       YA  IA L  A+R+       RSA +T  DG A      +TK+PP   C CGR++R AP+V A GP+ C +CG +F
Sbjct:   75 DVLATLLHEAAHALANVRGIKDTSRQGRWHNARFKQLAAEVGIETTKDPRLGWSPTTLPEATRTTYADTIAALGAALRM------HRSAELT--DGRA-----TKTKAPPTCVCDCGRRIRFAPTVLAAGPITCVVCGTDF 202          
BLAST of mRNA_M-pyrifera_M_contig95425.22001.1 vs. uniprot
Match: A0A1Q8LHJ9_9PSEU (Uncharacterized protein n=1 Tax=Pseudonocardia sp. Ae717_Ps2 TaxID=1885573 RepID=A0A1Q8LHJ9_9PSEU)

HSP 1 Score: 114 bits (284), Expect = 1.690e-28
Identity = 60/140 (42.86%), Postives = 78/140 (55.71%), Query Frame = 1
Query:    4 DVFEVLLHEAAHGLNAVRGVKDVSRGGRYHNARFKATAIEVGLDVEMMPPYGWAKTSMTPEALKQYAVEIADLKDAIRIARRIDDRRSAGITAGDGEAGTTSPERTKSPPMSCGCGRKMRMAPSVAAQGPVHCGMCGVEF 423
            DV   LLHEAAH L   RG++D SR GR+HNARFKA A EVG+ VE  P  GW+ T++       Y   I  L+ A+R+ R  +              G   P++   PP  CGCGR++R+A SV   GP+ CG+C  EF
Sbjct:  108 DVLGTLLHEAAHALAHARGIQDTSRQGRWHNARFKAIAAEVGIAVEKDPKLGWSPTTVPDATQAAYGEVIEQLRGALRMRRASE------------SGGPAKPKKPGPPPCVCGCGRRIRVAASVRELGPIVCGVCDQEF 235          
BLAST of mRNA_M-pyrifera_M_contig95425.22001.1 vs. uniprot
Match: A0A4Q7V417_9PSEU (Uncharacterized protein n=2 Tax=Pseudonocardia sediminis TaxID=1397368 RepID=A0A4Q7V417_9PSEU)

HSP 1 Score: 114 bits (285), Expect = 1.720e-28
Identity = 64/140 (45.71%), Postives = 81/140 (57.86%), Query Frame = 1
Query:    4 DVFEVLLHEAAHGLNAVRGVKDVSRGGRYHNARFKATAIEVGLDVEMMPPYGWAKTSMTPEALKQYAVEIADLKDAIRIARRIDDRRSAGITAGDGEAGTTSPERTKSPPMSCGCGRKMRMAPSVAAQGPVHCGMCGVEF 423
            DVF  LLHEAAH L  VRGV+D SR GR+HNARFKA A E+G+ VE  P  GW+ T++       YA  I +L  A+R+ R       A  T G    G   P++   P   C CGR++R+A SV   GP+ CG+C  EF
Sbjct:  113 DVFGTLLHEAAHALAHVRGVQDTSRQGRWHNARFKAFAEEIGVAVEKDPKLGWSPTTVPDATRAVYAAAIGELGRALRMRR-------ASETTG----GAEKPKKPGPPACVCACGRRIRVAVSVREAGPILCGICEAEF 241          
BLAST of mRNA_M-pyrifera_M_contig95425.22001.1 vs. uniprot
Match: UPI001B7CFB69 (hypothetical protein n=1 Tax=Pseudonocardia bannensis TaxID=630973 RepID=UPI001B7CFB69)

HSP 1 Score: 112 bits (281), Expect = 2.160e-28
Identity = 61/142 (42.96%), Postives = 82/142 (57.75%), Query Frame = 1
Query:    4 DVFEVLLHEAAHGLNAVRGVKDVSRGGRYHNARFKATAIEVGLDVEMMPPYGWAKTSMTPEALKQYAVEIADLKDAIRIARRIDDRRSAGITAGDGEAGTTSPERTKSPPMSCGCGRKMRMAPSVAAQGPVHCGMCGVEFTI 429
            +V   LLHEAAH L  VRGVKD SR GR+HNARFKA A E+G++V      GW+ TS+     + YA  I +L  A+R+ R ++        +G+G     +P         CGC RK+R++ SV A GP+ CG CG +F I
Sbjct:   58 EVLATLLHEAAHALAHVRGVKDTSRQGRWHNARFKALAEELGIEVTKDAKIGWSPTSIPTATREAYASTIEELGAALRLIRAVE-------VSGEGRKSKPAPSAV------CGCDRKIRVSKSVLAAGPILCGACGTKFAI 186          
BLAST of mRNA_M-pyrifera_M_contig95425.22001.1 vs. uniprot
Match: UPI0018E9871D (hypothetical protein n=1 Tax=Kineosporia sp. A_224 TaxID=1962180 RepID=UPI0018E9871D)

HSP 1 Score: 113 bits (282), Expect = 7.350e-28
Identity = 63/151 (41.72%), Postives = 85/151 (56.29%), Query Frame = 1
Query:    4 DVFEVLLHEAAHGLNAVRGVKDVSRGGRYHNARFKATAIEVGLDVEMMPPYGWAKTSMTPEALKQYAVEIADLKDAIRIARRI---------DDRRSAGITAGDGEAGTTSPERTKSPPMS-CGCGRKMRMAPSVAAQGPVHCGMCGVEFT 426
            DV   LLHEA H L  VRGVKD SR GRYHN +F+  A E+GLDV  +P  GW+ T +      +YA  +  L  A+ + RR          DD  +AG     G  G+T P  +++   + CGCGR++R+  SV A GP+ CG+CG  F+
Sbjct:  101 DVLGTLLHEATHALAHVRGVKDCSRQGRYHNRKFRDLAEEMGLDVREVPVIGWSDTHVPAATQDEYAATLTALTAALTLHRRAEGAMPVTAPDDEAAAGADTNTGN-GSTGPNASRNGAAARCGCGRRIRVTASVLALGPITCGLCGQPFS 250          
BLAST of mRNA_M-pyrifera_M_contig95425.22001.1 vs. uniprot
Match: UPI0018EA269D (hypothetical protein n=1 Tax=Kineosporia sp. R_H_3 TaxID=1961848 RepID=UPI0018EA269D)

HSP 1 Score: 112 bits (279), Expect = 1.920e-27
Identity = 62/151 (41.06%), Postives = 81/151 (53.64%), Query Frame = 1
Query:    4 DVFEVLLHEAAHGLNAVRGVKDVSRGGRYHNARFKATAIEVGLDVEMMPPYGWAKTSMTPEALKQYAVEIADLKDAIRIARRI----------DDRRSAGITAGDGEAGTTSPERTKSPPMSCGCGRKMRMAPSVAAQGPVHCGMCGVEFT 426
            DV   LLHEA H L  VRGVKD SR GRYHN +F+  A E+GLDV  +P  GW+ T +      +YA  +  L  A+ + RR           D+   A  + G G AG  S     +    CGCGR++R+  SV A GP+ CG+CG  F+
Sbjct:  108 DVLGTLLHEATHALAHVRGVKDCSRQGRYHNRKFRDLAEELGLDVREVPVIGWSDTHVPAATRDEYAATLTSLTAALTLHRRAEGGMPVTAPDDEAAGADPSTGSGSAGPNSSRNGAA--ARCGCGRRIRVTASVLALGPITCGLCGQPFS 256          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95425.22001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X6P1E1_9ACTN1.270e-4860.53Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A7J9XW56_9PSEU1.290e-3346.81Uncharacterized protein n=1 Tax=Pseudonocardiaceae... [more]
A0A7V9BMY9_9PSEU1.110e-3146.43Uncharacterized protein n=1 Tax=Pseudonocardiales ... [more]
A0A7J9XSH8_9PSEU9.800e-3145.39Uncharacterized protein n=1 Tax=Pseudonocardiaceae... [more]
A0A7J9XKH5_9PSEU3.470e-2946.81Uncharacterized protein n=1 Tax=Pseudonocardiaceae... [more]
A0A1Q8LHJ9_9PSEU1.690e-2842.86Uncharacterized protein n=1 Tax=Pseudonocardia sp.... [more]
A0A4Q7V417_9PSEU1.720e-2845.71Uncharacterized protein n=2 Tax=Pseudonocardia sed... [more]
UPI001B7CFB692.160e-2842.96hypothetical protein n=1 Tax=Pseudonocardia bannen... [more]
UPI0018E9871D7.350e-2841.72hypothetical protein n=1 Tax=Kineosporia sp. A_224... [more]
UPI0018EA269D1.920e-2741.06hypothetical protein n=1 Tax=Kineosporia sp. R_H_3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95425contigM-pyrifera_M_contig95425:15..443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score107.1
Seed ortholog evalue7.1e-21
Seed eggNOG ortholog1440053.JOEI01000009_gene5841
Hectar predicted targeting categoryother localisation
EggNOG OGs2DRCF@1,2GM2S@201174,33B7F@2
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size429
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816868.08148-CDS-M-pyrifera_M_contig95425:14..4431622816868.08148-CDS-M-pyrifera_M_contig95425:14..443Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95425 15..443 +
1692278225.5463314-CDS-M-pyrifera_M_contig95425:14..4431692278225.5463314-CDS-M-pyrifera_M_contig95425:14..443Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95425 15..443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95425.22001.1prot_M-pyrifera_M_contig95425.22001.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95425 15..443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95425.22001.1

>prot_M-pyrifera_M_contig95425.22001.1 ID=prot_M-pyrifera_M_contig95425.22001.1|Name=mRNA_M-pyrifera_M_contig95425.22001.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
EDVFEVLLHEAAHGLNAVRGVKDVSRGGRYHNARFKATAIEVGLDVEMMP
PYGWAKTSMTPEALKQYAVEIADLKDAIRIARRIDDRRSAGITAGDGEAG
TTSPERTKSPPMSCGCGRKMRMAPSVAAQGPVHCGMCGVEFTI
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mRNA from alignment at M-pyrifera_M_contig95425:15..443+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95425.22001.1 ID=mRNA_M-pyrifera_M_contig95425.22001.1|Name=mRNA_M-pyrifera_M_contig95425.22001.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig95425:15..443+ (Macrocystis pyrifera P11B4 male)
GAGGATGTCTTCGAGGTGTTGCTCCACGAGGCGGCACACGGGTTGAACGC CGTTCGTGGCGTCAAAGATGTGTCCCGAGGCGGTCGCTACCACAACGCCC GATTCAAGGCGACAGCCATCGAGGTCGGGCTCGATGTCGAGATGATGCCA CCCTACGGGTGGGCGAAGACGTCGATGACGCCCGAGGCGCTCAAGCAGTA CGCCGTCGAGATCGCCGATCTGAAGGATGCAATCCGTATCGCTCGACGGA TCGACGATAGGCGATCAGCTGGGATCACAGCGGGCGACGGCGAGGCCGGT ACAACCAGTCCCGAGCGAACAAAGTCACCGCCCATGTCGTGTGGGTGTGG CCGCAAGATGCGCATGGCGCCCTCGGTCGCCGCCCAAGGTCCAGTCCATT GTGGGATGTGTGGAGTCGAGTTCACCATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95425:15..443+

>mRNA_M-pyrifera_M_contig95425.22001.1 ID=mRNA_M-pyrifera_M_contig95425.22001.1|Name=mRNA_M-pyrifera_M_contig95425.22001.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig95425:15..443+ (Macrocystis pyrifera P11B4 male)
GAGGATGTCTTCGAGGTGTTGCTCCACGAGGCGGCACACGGGTTGAACGC
CGTTCGTGGCGTCAAAGATGTGTCCCGAGGCGGTCGCTACCACAACGCCC
GATTCAAGGCGACAGCCATCGAGGTCGGGCTCGATGTCGAGATGATGCCA
CCCTACGGGTGGGCGAAGACGTCGATGACGCCCGAGGCGCTCAAGCAGTA
CGCCGTCGAGATCGCCGATCTGAAGGATGCAATCCGTATCGCTCGACGGA
TCGACGATAGGCGATCAGCTGGGATCACAGCGGGCGACGGCGAGGCCGGT
ACAACCAGTCCCGAGCGAACAAAGTCACCGCCCATGTCGTGTGGGTGTGG
CCGCAAGATGCGCATGGCGCCCTCGGTCGCCGCCCAAGGTCCAGTCCATT
GTGGGATGTGTGGAGTCGAGTTCACCATCGAGGATGTCTTCGAGGTGTTG
CTCCACGAGGCGGCACACGGGTTGAACGCCGTTCGTGGCGTCAAAGATGT
GTCCCGAGGCGGTCGCTACCACAACGCCCGATTCAAGGCGACAGCCATCG
AGGTCGGGCTCGATGTCGAGATGATGCCACCCTACGGGTGGGCGAAGACG
TCGATGACGCCCGAGGCGCTCAAGCAGTACGCCGTCGAGATCGCCGATCT
GAAGGATGCAATCCGTATCGCTCGACGGATCGACGATAGGCGATCAGCTG
GGATCACAGCGGGCGACGGCGAGGCCGGTACAACCAGTCCCGAGCGAACA
AAGTCACCGCCCATGTCGTGTGGGTGTGGCCGCAAGATGCGCATGGCGCC
CTCGGTCGCCGCCCAAGGTCCAGTCCATTGTGGGATGTGTGGAGTCGAGT
TCACCATC
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