mRNA_M-pyrifera_M_contig95353.21992.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95353.21992.1
Unique NamemRNA_M-pyrifera_M_contig95353.21992.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig95353.21992.1 vs. uniprot
Match: M4BNY8_HYAAE (NUC173 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BNY8_HYAAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.040e-5
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:  292 GMKRRKTGKEQQKYSGREYSAKKGGGDAMRQGRHEPFAYQRLDPKMLNKRHKGKAKQQFDTVVRSAKKGAK 504
            G  +RK G E    SGREY AKK GGD  ++G+ EP+AY  LDPK++ KR+K +A  ++   V + ++G K
Sbjct: 1171 GRMKRKRGGESDPNSGREYRAKKAGGDVKKKGKLEPYAYIPLDPKLMAKRNKREAVTRYGGSVGNKRRGKK 1241
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BLAST of mRNA_M-pyrifera_M_contig95353.21992.1 vs. uniprot
Match: W4VRP4_9DIPT (NUC173 domain-containing protein n=1 Tax=Corethrella appendiculata TaxID=1370023 RepID=W4VRP4_9DIPT)

HSP 1 Score: 53.1 bits (126), Expect = 4.810e-5
Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:  307 KTGKEQQKYSGREYSAKKGGGDAMRQGRHEPFAYQRLDPKMLNKRHKGKAKQQFDTVVRSAKKGA 501
            KT K  Q  +G EY +KKG GD +++G+HEP+AY  L    LN+R + K   QF  +V+ A+KGA
Sbjct: 1306 KTAKSMQS-TGSEYRSKKGQGDILKKGKHEPYAYVPLSRNSLNRRKRAKNAGQFKNIVKGARKGA 1369
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95353.21992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
M4BNY8_HYAAE1.040e-545.07NUC173 domain-containing protein n=1 Tax=Hyalopero... [more]
W4VRP4_9DIPT4.810e-546.15NUC173 domain-containing protein n=1 Tax=Corethrel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95353contigM-pyrifera_M_contig95353:75..578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size504
Cds size504
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816867.7393436-CDS-M-pyrifera_M_contig95353:74..5781622816867.7393436-CDS-M-pyrifera_M_contig95353:74..578Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95353 75..578 -
1692278225.394302-CDS-M-pyrifera_M_contig95353:74..5781692278225.394302-CDS-M-pyrifera_M_contig95353:74..578Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95353 75..578 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95353.21992.1prot_M-pyrifera_M_contig95353.21992.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95353 75..578 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95353.21992.1

>prot_M-pyrifera_M_contig95353.21992.1 ID=prot_M-pyrifera_M_contig95353.21992.1|Name=mRNA_M-pyrifera_M_contig95353.21992.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=168bp
DEELEDFAEDDDGRWIIEDEELLERQRQQSSREQEATPPRMSVYDLIEDQ
LEKGKITKKRAKRLMEQLEDKDSDEEEDDDEELGVGGKRTRGGASSAGMK
RRKTGKEQQKYSGREYSAKKGGGDAMRQGRHEPFAYQRLDPKMLNKRHKG
KAKQQFDTVVRSAKKGAK
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mRNA from alignment at M-pyrifera_M_contig95353:75..578-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95353.21992.1 ID=mRNA_M-pyrifera_M_contig95353.21992.1|Name=mRNA_M-pyrifera_M_contig95353.21992.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig95353:75..578- (Macrocystis pyrifera P11B4 male)
GACGAAGAGCTGGAGGACTTTGCAGAGGACGACGACGGCAGATGGATCAT
CGAGGACGAAGAACTGCTGGAGAGGCAGCGGCAGCAGTCGAGCAGAGAGC
AGGAGGCAACGCCGCCGAGGATGTCGGTCTACGACCTCATCGAAGACCAG
CTGGAGAAGGGAAAGATCACGAAGAAGCGAGCGAAGCGCCTCATGGAGCA
GCTGGAGGACAAGGACAGCGACGAGGAGGAGGACGACGACGAGGAGCTGG
GCGTTGGCGGCAAGCGCACGCGAGGAGGCGCCTCCTCCGCAGGCATGAAG
CGGAGGAAGACTGGGAAGGAGCAACAGAAGTACAGCGGAAGAGAGTACTC
TGCCAAGAAGGGTGGCGGCGACGCAATGCGCCAGGGGAGACACGAGCCCT
TCGCTTACCAGCGCCTCGACCCCAAGATGCTCAACAAGCGCCACAAGGGC
AAGGCCAAGCAGCAGTTCGACACCGTCGTCCGCTCCGCCAAGAAGGGCGC
CAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95353:75..578-

>mRNA_M-pyrifera_M_contig95353.21992.1 ID=mRNA_M-pyrifera_M_contig95353.21992.1|Name=mRNA_M-pyrifera_M_contig95353.21992.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1008bp|location=Sequence derived from alignment at M-pyrifera_M_contig95353:75..578- (Macrocystis pyrifera P11B4 male)
GACGAAGAGCTGGAGGACTTTGCAGAGGACGACGACGGCAGATGGATCAT
CGAGGACGAAGAACTGCTGGAGAGGCAGCGGCAGCAGTCGAGCAGAGAGC
AGGAGGCAACGCCGCCGAGGATGTCGGTCTACGACCTCATCGAAGACCAG
CTGGAGAAGGGAAAGATCACGAAGAAGCGAGCGAAGCGCCTCATGGAGCA
GCTGGAGGACAAGGACAGCGACGAGGAGGAGGACGACGACGAGGAGCTGG
GCGTTGGCGGCAAGCGCACGCGAGGAGGCGCCTCCTCCGCAGGCATGAAG
CGGAGGAAGACTGGGAAGGAGCAACAGAAGTACAGCGGAAGAGAGTACTC
TGCCAAGAAGGGTGGCGGCGACGCAATGCGCCAGGGGAGACACGAGCCCT
TCGCTTACCAGCGCCTCGACCCCAAGATGCTCAACAAGCGCCACAAGGGC
AAGGCCAAGCAGCAGTTCGACACCGTCGTCCGCTCCGCCAAGAAGGGCGC
CAAGGACGAAGAGCTGGAGGACTTTGCAGAGGACGACGACGGCAGATGGA
TCATCGAGGACGAAGAACTGCTGGAGAGGCAGCGGCAGCAGTCGAGCAGA
GAGCAGGAGGCAACGCCGCCGAGGATGTCGGTCTACGACCTCATCGAAGA
CCAGCTGGAGAAGGGAAAGATCACGAAGAAGCGAGCGAAGCGCCTCATGG
AGCAGCTGGAGGACAAGGACAGCGACGAGGAGGAGGACGACGACGAGGAG
CTGGGCGTTGGCGGCAAGCGCACGCGAGGAGGCGCCTCCTCCGCAGGCAT
GAAGCGGAGGAAGACTGGGAAGGAGCAACAGAAGTACAGCGGAAGAGAGT
ACTCTGCCAAGAAGGGTGGCGGCGACGCAATGCGCCAGGGGAGACACGAG
CCCTTCGCTTACCAGCGCCTCGACCCCAAGATGCTCAACAAGCGCCACAA
GGGCAAGGCCAAGCAGCAGTTCGACACCGTCGTCCGCTCCGCCAAGAAGG
GCGCCAAG
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